mRNA_M-pyrifera_M_contig90509.20984.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90509.20984.1
Unique NamemRNA_M-pyrifera_M_contig90509.20984.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90509.20984.1 vs. uniprot
Match: A0A2E7KE86_9PLAN (Response regulatory domain-containing protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KE86_9PLAN)

HSP 1 Score: 504 bits (1298), Expect = 5.420e-178
Identity = 255/261 (97.70%), Postives = 259/261 (99.23%), Query Frame = 1
Query:    4 AILQNTSLLLVEDNILDARLITSRLQKIGYEALTHVGSLEEAVNWLKTAARVDVIVLDLTLPDSMGLHTFQFLHQRFAHIPIVILSGRNDQELAIKAVSLGAQDYVFKSEASSCVLQRSIRYAIERRHRLEMEMNMIAMDRDLEYAREIQRHLLPQTLPEIAGVDMASAYIPANWTGGDFFDVIPISRQAKNNHDLWQPAHLMSEEDKLNSIWGLTIADVSSHGFAPSLIMVDTRRVLRTCSHILQDPGEILTFANRAVSE 786
            AI+QNTSLLLVEDNILDARLITSRLQKIGY+ALTHVGSLEEAVNWLK+A RVDVIVLDLTLPDSMGLHTFQFLHQRFAHIPIVILSGRNDQELAIKAVSLGAQDYVFKSEASSCVLQRSIRYAIERRHRLEMEMNMIAMDRDLEYAREIQRHLLPQTLPEIAGVDMASAYIPANWTGGDFFDVIPISRQ K+NHDLWQPAHLMSEEDKLNSIWGLTIADVSSHGFAPSLIMVDTRRVLRTCSHILQDPGEILTFANRAVSE
Sbjct:    2 AIMQNTSLLLVEDNILDARLITSRLQKIGYDALTHVGSLEEAVNWLKSAPRVDVIVLDLTLPDSMGLHTFQFLHQRFAHIPIVILSGRNDQELAIKAVSLGAQDYVFKSEASSCVLQRSIRYAIERRHRLEMEMNMIAMDRDLEYAREIQRHLLPQTLPEIAGVDMASAYIPANWTGGDFFDVIPISRQVKHNHDLWQPAHLMSEEDKLNSIWGLTIADVSSHGFAPSLIMVDTRRVLRTCSHILQDPGEILTFANRAVSE 262          
BLAST of mRNA_M-pyrifera_M_contig90509.20984.1 vs. uniprot
Match: A0A517Q1L9_9PLAN (Phosphoserine phosphatase RsbU n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q1L9_9PLAN)

HSP 1 Score: 449 bits (1155), Expect = 2.770e-156
Identity = 227/259 (87.64%), Postives = 240/259 (92.66%), Query Frame = 1
Query:   10 LQNTSLLLVEDNILDARLITSRLQKIGYEALTHVGSLEEAVNWLKTAARVDVIVLDLTLPDSMGLHTFQFLHQRFAHIPIVILSGRNDQELAIKAVSLGAQDYVFKSEASSCVLQRSIRYAIERRHRLEMEMNMIAMDRDLEYAREIQRHLLPQTLPEIAGVDMASAYIPANWTGGDFFDVIPISRQAKNNHDLWQPAHLMSEEDKLNSIWGLTIADVSSHGFAPSLIMVDTRRVLRTCSHILQDPGEILTFANRAVSE 786
            + NTSLLLVEDNILDARLITSRLQKIG   LTHVGSL++AV+WL TA  VDVIVLDLTLPDS+GLHTFQ+LHQRFAHIPIVILSGRNDQ+LA+KAVSLGAQDYVFKSEASSCVL RSIRYAIER   L++E +MI MDRDLE+AREIQRHLLPQTLPEIAGVDMAS YIPANWTGGDFFDVIPISRQAK NHDLWQPA  M EEDK NSIWGLTIADVSSHGFAPSLIMVDTRRVLRTCSHILQDPGEILTFANRAV+E
Sbjct:    1 MHNTSLLLVEDNILDARLITSRLQKIGCHTLTHVGSLQQAVDWLNTARHVDVIVLDLTLPDSLGLHTFQYLHQRFAHIPIVILSGRNDQDLAVKAVSLGAQDYVFKSEASSCVLLRSIRYAIERMRLLKIETDMIKMDRDLEFAREIQRHLLPQTLPEIAGVDMASTYIPANWTGGDFFDVIPISRQAKCNHDLWQPAQQMCEEDKNNSIWGLTIADVSSHGFAPSLIMVDTRRVLRTCSHILQDPGEILTFANRAVNE 259          
BLAST of mRNA_M-pyrifera_M_contig90509.20984.1 vs. uniprot
Match: A0A5B9QSI9_9BACT (Phosphoserine phosphatase RsbU n=2 Tax=Roseimaritima ulvae TaxID=980254 RepID=A0A5B9QSI9_9BACT)

HSP 1 Score: 201 bits (510), Expect = 7.190e-59
Identity = 118/253 (46.64%), Postives = 154/253 (60.87%), Query Frame = 1
Query:   28 LLVEDNILDARLITSRLQKIGYEALTHVGSLEEAVNWLKTAARVDVIVLDLTLPDSMGLHTFQFLHQRFAHIPIVILSGRNDQELAIKAVSLGAQDYVFKSEASSCVLQRSIRYAIERRHRLEMEMNMIAMDRDLEYAREIQRHLLPQTLPEIAGVDMASAYIPANWTGGDFFDVIPISRQAKNNHDLWQPAHLMSEEDKLNSIWGLTIADVSSHGFAPSLIMVDTRRVLRTCSHILQDPGEILTFANRAVSE 786
            LLVED+  DA +IT+ L+  G   ++HV SL  A   L+     DV++LDL LPDS GL T++ LH RF   P+VILSG+ DQ+LA+ AV+ GAQDYV K  A   +L RS+RYAIER+ RL  E   + ++ DLE AR IQ+ +LP   P+I G D+A+   P    GGDFFD I                       + +  W + +ADVSSHGF P+LIMV TRR+LRTCS    D G+ILT A+ AV+E
Sbjct:   23 LLVEDSETDAIVITAHLRSSGLFKISHVPSLYAACESLQHN-HTDVVILDLNLPDSAGLATYESLHLRFPAAPVVILSGQEDQQLAVAAVAKGAQDYVPKESADKPLLVRSLRYAIERQARLLAERRNLLIESDLEVARRIQQRMLPVEPPQIPGYDIAAVCRPTAACGGDFFDFI----------------------QRADGTWDVLVADVSSHGFGPALIMVGTRRILRTCSAFHDDLGKILTIASEAVAE 252          
BLAST of mRNA_M-pyrifera_M_contig90509.20984.1 vs. uniprot
Match: A0A517ME40_9BACT (Phosphoserine phosphatase RsbU n=1 Tax=Roseimaritima multifibrata TaxID=1930274 RepID=A0A517ME40_9BACT)

HSP 1 Score: 195 bits (496), Expect = 7.190e-57
Identity = 111/253 (43.87%), Postives = 154/253 (60.87%), Query Frame = 1
Query:   28 LLVEDNILDARLITSRLQKIGYEALTHVGSLEEAVNWLKTAARVDVIVLDLTLPDSMGLHTFQFLHQRFAHIPIVILSGRNDQELAIKAVSLGAQDYVFKSEASSCVLQRSIRYAIERRHRLEMEMNMIAMDRDLEYAREIQRHLLPQTLPEIAGVDMASAYIPANWTGGDFFDVIPISRQAKNNHDLWQPAHLMSEEDKLNSIWGLTIADVSSHGFAPSLIMVDTRRVLRTCSHILQDPGEILTFANRAVSE 786
            LLVED+  DA +I + L+      +THV  L+ A+  L      DV++LDL LPDS+GL TF  + ++   IP+VILSG  D++LA+ AV+ GAQDYV K+     +L R++RYAIER+ RL  E   + M+ D+  AR IQ+ +LP   P I G D+ +   P +  GGDFFD IPI R+                       W + +ADVSSHGFAP+LIMV  RR+LR+C+ + ++ G+ILT ANRAV+E
Sbjct:    7 LLVEDSQTDALVIRAHLRSSHLFHVTHVCDLDSALRALDHRG-TDVVILDLNLPDSLGLDTFTSIRKKNKDIPVVILSGHEDEQLAVSAVAAGAQDYVPKAMVGQPLLVRALRYAIERQARLLAERRNMQMESDMNIARRIQQRMLPSMPPTIRGFDIGATCEPTSECGGDFFDFIPIDRRR----------------------WDVVVADVSSHGFAPALIMVGARRILRSCAQMNKEVGQILTIANRAVAE 236          
BLAST of mRNA_M-pyrifera_M_contig90509.20984.1 vs. uniprot
Match: A0A2A2W693_9BACT (Response regulatory domain-containing protein n=4 Tax=Planctomycetes TaxID=203682 RepID=A0A2A2W693_9BACT)

HSP 1 Score: 189 bits (479), Expect = 2.780e-54
Identity = 103/254 (40.55%), Postives = 150/254 (59.06%), Query Frame = 1
Query:   25 LLLVEDNILDARLITSRLQKIGYEALTHVGSLEEAVNWLKTAARVDVIVLDLTLPDSMGLHTFQFLHQRFAHIPIVILSGRNDQELAIKAVSLGAQDYVFKSEASSCVLQRSIRYAIERRHRLEMEMNMIAMDRDLEYAREIQRHLLPQTLPEIAGVDMASAYIPANWTGGDFFDVIPISRQAKNNHDLWQPAHLMSEEDKLNSIWGLTIADVSSHGFAPSLIMVDTRRVLRTCSHILQDPGEILTFANRAVSE 786
            +L+VED+++DA ++  RL++ G   +THV +L E +  L      D ++LDL L DS GL TF  +H  F + PI+IL+G +D+ L IKA+ LGAQDYV KS     VL RS+ YAIER  R  +E    A+DR+L++A++IQ +LLP   PEI G D+A   +  + T GDFFD I                      D  +  W + +ADV  HG  P++I V TRR+LR+ + + +D G+++T ANR + E
Sbjct:   19 ILVVEDSLVDAMVVRERLERDGRFHVTHVATLAETLQRLSQDVLPDAVILDLNLTDSAGLETFCRIHDPFPNQPIIILTGEHDESLGIKAMRLGAQDYVGKSHLDGQVLVRSLLYAIERNRRRMVEHRQRAVDRELQFAKQIQEYLLPNESPEIPGFDVAGRCVAIDSTSGDFFDFI----------------------DHGDGKWDIVLADVCGHGIGPAMITVGTRRLLRSTAELYEDVGQLVTIANRGICE 250          
BLAST of mRNA_M-pyrifera_M_contig90509.20984.1 vs. uniprot
Match: A0A5B9MC68_9BACT (Phosphoserine phosphatase RsbU n=2 Tax=Stieleria maiorica TaxID=2795974 RepID=A0A5B9MC68_9BACT)

HSP 1 Score: 175 bits (444), Expect = 4.370e-49
Identity = 98/254 (38.58%), Postives = 145/254 (57.09%), Query Frame = 1
Query:   25 LLLVEDNILDARLITSRLQKIGYEALTHVGSLEEAVNWLKTAARVDVIVLDLTLPDSMGLHTFQFLHQRFAHIPIVILSGRNDQELAIKAVSLGAQDYVFKSEASSCVLQRSIRYAIERRHRLEMEMNMIAMDRDLEYAREIQRHLLPQTLPEIAGVDMASAYIPANWTGGDFFDVIPISRQAKNNHDLWQPAHLMSEEDKLNSIWGLTIADVSSHGFAPSLIMVDTRRVLRTCSHILQDPGEILTFANRAVSE 786
            +L+VED+ +DA ++  RL+  G   +T   +L E +  L +    D ++LDL L DS GL TF+ +H  F   PIVIL+G +D+ L I A+ LGAQDYV KS+    VL RS+ YAIER  R  +E     +DR+L++A++IQ +LLP   PEI G D+A   +  + T GDF+D I                      D  +  W + +ADV  HG  P++I V TRR+LR+ + + +D G+++T AN  + E
Sbjct:   19 ILVVEDSRVDAMVVHERLESDGRFTVTEAATLAETLERLSSGLTPDALILDLNLSDSAGLDTFRRIHDPFPDQPIVILTGEHDESLGITAMRLGAQDYVGKSQLDGEVLVRSLLYAIERHKRRLVEHRQRTVDRELQFAKQIQEYLLPNDPPEIPGFDVAGRCVAIDSTSGDFYDFI----------------------DHGDGKWDIVLADVCGHGIGPAMITVGTRRLLRSTAALYEDVGQLVTIANHGICE 250          
BLAST of mRNA_M-pyrifera_M_contig90509.20984.1 vs. uniprot
Match: A0A7Y5SLE8_9BACT (Fused response regulator/phosphatase n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5SLE8_9BACT)

HSP 1 Score: 172 bits (435), Expect = 8.780e-48
Identity = 102/259 (39.38%), Postives = 143/259 (55.21%), Query Frame = 1
Query:   13 QNTSLLLVEDNILDARLITSRLQKI---GYEALTHVGSLEEAVNWLKTAARVDVIVLDLTLPDSMGLHTFQFLHQRFAHIPIVILSGRNDQELAIKAVSLGAQDYVFKSEASSCVLQRSIRYAIERRHRLEMEMNMIAMDRDLEYAREIQRHLLPQTLPEIAGVDMASAYIPANWTGGDFFDVIPISRQAKNNHDLWQPAHLMSEEDKLNSIWGLTIADVSSHGFAPSLIMVDTRRVLRTCSHILQDPGEILTFANRAV 780
            Q T +LLVED++ D  ++ S L      G+E L H   L   +        VD ++LDL+LPD +GL TFQ ++ R  H+PI++L+G +D+E A+KAV  GAQDY+ K + S  +L RS+RY IER  R   E  + A   +   AR+IQ+ L P   P   G +M    +PA  T GD+FD IP+            P   +          G+ + DVSSHG  P+L+M +TR  LRT + +L DP EILT ANR +
Sbjct:    4 QRTRILLVEDDLDDVWILRSLLADRWDGGFELL-HCDRLAAGIERC-AEGNVDAVLLDLSLPDGLGLETFQAMYDRNEHVPIIVLTGLDDREAAVKAVQAGAQDYLVKGQVSDELLVRSLRYGIERMRRHVAEETLRAAQEEFRIARQIQQRLFPDAPPRCPGFEMYGKAVPAAETAGDYFDYIPL------------PGGRL----------GVVVGDVSSHGMGPALVMAETRACLRTLAQVLDDPSEILTRANRVL 238          
BLAST of mRNA_M-pyrifera_M_contig90509.20984.1 vs. uniprot
Match: A0A2E7ES17_9PLAN (Response regulatory domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7ES17_9PLAN)

HSP 1 Score: 167 bits (422), Expect = 6.410e-46
Identity = 103/256 (40.23%), Postives = 142/256 (55.47%), Query Frame = 1
Query:   19 TSLLLVEDNILDARLITSRLQKIGYEA-LTHVGSLEEAVNWLKTAARVDVIVLDLTLPDSMGLHTFQFLHQRFAHIPIVILSGRNDQELAIKAVSLGAQDYVFKSEASSCVLQRSIRYAIERRHRLEMEMNMIAMDRDLEYAREIQRHLLPQTLPEIAGVDMASAYIPANWTGGDFFDVIPISRQAKNNHDLWQPAHLMSEEDKLNSIWGLTIADVSSHGFAPSLIMVDTRRVLRTCSHILQDPGEILTFANRAVS 783
            T +LL+ED+  DA LI + L+K G    +   G L E +  +   A VDV++LDL LPDS GL TF+ +H R   +P+++LSG++D E A+ AVS GAQDY+ K+E +   L RS+RYA+ER  R + E        +L  A +IQR L PQ  P + G D+     PA   GGD+FD  P++                      +    + IADVS HG  PSLIM +TR +LRT +    D G ILT AN+ +S
Sbjct:   10 TRVLLIEDSDTDALLIQAHLKKSGLPVVIRREGRLGEGLRHIDQGA-VDVVLLDLNLPDSTGLDTFRAIHDRVKRLPVIVLSGQDDLETAVTAVSQGAQDYLPKTELNRITLARSVRYAVERSRRQQAEQ-------ELSTAGDIQRSLFPQEAPSVPGFDIYGRCEPAVSAGGDYFDYFPLA----------------------DGNIAIVIADVSGHGIGPSLIMSETRAILRTLAISQTDAGRILTQANQVLS 235          
BLAST of mRNA_M-pyrifera_M_contig90509.20984.1 vs. uniprot
Match: A0A7X7IQN8_9BACT (SpoIIE family protein phosphatase n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7IQN8_9BACT)

HSP 1 Score: 156 bits (394), Expect = 8.470e-42
Identity = 88/228 (38.60%), Postives = 130/228 (57.02%), Query Frame = 1
Query:  100 LTHVGSLEEAVNWLKTAARVDVIVLDLTLPDSMGLHTFQFLHQRFAHIPIVILSGRNDQELAIKAVSLGAQDYVFKSEASSCVLQRSIRYAIERRHRLEMEMNMIAMDRDLEYAREIQRHLLPQTLPEIAGVDMASAYIPANWTGGDFFDVIPISRQAKNNHDLWQPAHLMSEEDKLNSIWGLTIADVSSHGFAPSLIMVDTRRVLRTCSHILQDPGEILTFANRAVS 783
            L H  +L  A+       R+D+I+LDL+LPDS GL TF  ++     +PIV+L+G  ++ L ++AV  GA+DY+ K++    +L RSIRYA+ER+ R  +E  +     +   A++IQ+ L P T P I G+D+AS   PA  T GD+FD IP+S                  + +L     + I DV+ HG  P+L+M +TR  LRT   + QDP EILT ANR ++
Sbjct:   35 LVHAETLAVAMRHC-AMGRIDLILLDLSLPDSRGLETFLVMYSAAEGVPIVVLTGDTNETLGVRAVQAGAEDYLVKNQVDDQLLIRSIRYALERKRRHRIEDQLRDTSEEFRGAQQIQKRLFPATPPRIDGLDIASGLYPAKATAGDYFDYIPMS------------------DGRL----AVVIGDVTGHGMGPALLMAETRACLRTLVEVSQDPSEILTRANRVLA 239          
BLAST of mRNA_M-pyrifera_M_contig90509.20984.1 vs. uniprot
Match: A0A3A0DNN7_9BACT (Response regulatory domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0DNN7_9BACT)

HSP 1 Score: 156 bits (394), Expect = 2.040e-41
Identity = 97/256 (37.89%), Postives = 139/256 (54.30%), Query Frame = 1
Query:   22 SLLLVEDNILDARLITSRLQKI--GYEALTHVGSLEEAVNWLKTAARVDVIVLDLTLPDSMGLHTFQFLHQRFAHIPIVILSGRNDQELAIKAVSLGAQDYVFKSEASSCVLQRSIRYAIERRHRLEMEMNMIAMDRDLEYAREIQRHLLPQTLPEIAGVDMASAYIPANWTGGDFFDVIPISRQAKNNHDLWQPAHLMSEEDKLNSIWGLTIADVSSHGFAPSLIMVDTRRVLRTCSHILQDPGEILTFANRAVS 783
            ++LLV+D+  D  LI   L +   G   +THV  +  A+++L    R+D I+LDLTL D+ GL  F  L+ +  H+P+++LSG +D  LA+KAV  GAQDY+ KS+ +  +L RS+RY IER  R   E  +         AR+IQR L P   P + G D+A    PA+ TGGDF+D IP++                      +   GL +ADVS+HG   +L+M +TR  LR       D GEIL   NR ++
Sbjct:   48 NILLVDDSAEDVSLIRGLLDRRWDGDFRMTHVEDVATALDFL-AHQRIDAILLDLTLKDTPGLSGFLQLYAKAPHLPVIVLSGHHDDSLAMKAVQAGAQDYLVKSQLTDELLVRSVRYGIERAGREHAEEALRMTTAKFRVARDIQRRLFPARAPTVPGYDLAGLTSPADETGGDFYDYIPLA----------------------DGRIGLVVADVSNHGLGSALLMAETRAYLRALVLSQNDAGEILGHVNRILA 280          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90509.20984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KE86_9PLAN5.420e-17897.70Response regulatory domain-containing protein n=6 ... [more]
A0A517Q1L9_9PLAN2.770e-15687.64Phosphoserine phosphatase RsbU n=2 Tax=Gimesia pan... [more]
A0A5B9QSI9_9BACT7.190e-5946.64Phosphoserine phosphatase RsbU n=2 Tax=Roseimariti... [more]
A0A517ME40_9BACT7.190e-5743.87Phosphoserine phosphatase RsbU n=1 Tax=Roseimariti... [more]
A0A2A2W693_9BACT2.780e-5440.55Response regulatory domain-containing protein n=4 ... [more]
A0A5B9MC68_9BACT4.370e-4938.58Phosphoserine phosphatase RsbU n=2 Tax=Stieleria m... [more]
A0A7Y5SLE8_9BACT8.780e-4839.38Fused response regulator/phosphatase n=1 Tax=Pirel... [more]
A0A2E7ES17_9PLAN6.410e-4640.23Response regulatory domain-containing protein n=1 ... [more]
A0A7X7IQN8_9BACT8.470e-4238.60SpoIIE family protein phosphatase n=1 Tax=Pirellul... [more]
A0A3A0DNN7_9BACT2.040e-4137.89Response regulatory domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90509contigM-pyrifera_M_contig90509:2..787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score119.8
Seed ortholog evalue1.9e-24
Seed eggNOG ortholog595460.RRSWK_00394
Preferred namersbP
KEGG koko:K07315
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG2208 Serine phosphatase RsbU regulator of sigma subunit
EggNOG OGs2J02Z@203682,COG0745@1,COG0745@2,COG2208@1,COG2208@2
EC3.1.3.3
COG Functional cat.T
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Exons1
Model size786
Cds size786
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.0197682-CDS-M-pyrifera_M_contig90509:1..7871622816817.0197682-CDS-M-pyrifera_M_contig90509:1..787Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90509 2..787 -
1692278195.6419635-CDS-M-pyrifera_M_contig90509:1..7871692278195.6419635-CDS-M-pyrifera_M_contig90509:1..787Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90509 2..787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90509.20984.1prot_M-pyrifera_M_contig90509.20984.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90509 2..787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90509.20984.1

>prot_M-pyrifera_M_contig90509.20984.1 ID=prot_M-pyrifera_M_contig90509.20984.1|Name=mRNA_M-pyrifera_M_contig90509.20984.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=262bp
VAILQNTSLLLVEDNILDARLITSRLQKIGYEALTHVGSLEEAVNWLKTA
ARVDVIVLDLTLPDSMGLHTFQFLHQRFAHIPIVILSGRNDQELAIKAVS
LGAQDYVFKSEASSCVLQRSIRYAIERRHRLEMEMNMIAMDRDLEYAREI
QRHLLPQTLPEIAGVDMASAYIPANWTGGDFFDVIPISRQAKNNHDLWQP
AHLMSEEDKLNSIWGLTIADVSSHGFAPSLIMVDTRRVLRTCSHILQDPG
EILTFANRAVSE
back to top

mRNA from alignment at M-pyrifera_M_contig90509:2..787-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90509.20984.1 ID=mRNA_M-pyrifera_M_contig90509.20984.1|Name=mRNA_M-pyrifera_M_contig90509.20984.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig90509:2..787- (Macrocystis pyrifera P11B4 male)
GTGGCCATTCTGCAAAATACCTCATTACTGCTTGTCGAAGATAACATCCT GGATGCCAGGCTGATCACATCTCGCTTACAGAAGATCGGCTATGAAGCTC TCACACATGTTGGTTCTCTGGAAGAAGCGGTAAACTGGCTCAAGACTGCC GCGCGCGTGGATGTGATCGTACTCGATCTCACGCTGCCCGACTCCATGGG GTTGCATACGTTTCAATTTTTGCATCAGCGTTTCGCACACATTCCGATTG TGATCTTGAGCGGACGCAACGATCAGGAACTGGCCATCAAAGCGGTCTCG CTGGGCGCACAGGATTACGTTTTCAAATCCGAAGCAAGCAGCTGTGTGCT GCAGCGATCTATCCGCTATGCCATCGAACGCAGGCACCGCCTGGAAATGG AAATGAACATGATCGCGATGGACCGCGATCTGGAATATGCCCGGGAAATT CAAAGGCATCTGCTGCCTCAGACATTGCCGGAAATCGCCGGCGTCGACAT GGCAAGTGCTTACATCCCCGCTAACTGGACTGGCGGGGATTTTTTTGACG TGATTCCGATCAGCCGCCAGGCGAAAAACAATCATGATCTCTGGCAACCC GCGCACCTGATGAGCGAAGAAGACAAACTCAATTCCATCTGGGGTCTGAC CATTGCGGATGTCAGCAGCCACGGCTTCGCGCCTTCGCTGATCATGGTCG ATACCCGCCGTGTACTCCGAACTTGCTCCCACATTCTGCAGGATCCGGGT GAGATTCTGACCTTTGCCAATCGTGCGGTAAGTGAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90509:2..787-

>mRNA_M-pyrifera_M_contig90509.20984.1 ID=mRNA_M-pyrifera_M_contig90509.20984.1|Name=mRNA_M-pyrifera_M_contig90509.20984.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1572bp|location=Sequence derived from alignment at M-pyrifera_M_contig90509:2..787- (Macrocystis pyrifera P11B4 male)
GTGGCCATTCTGCAAAATACCTCATTACTGCTTGTCGAAGATAACATCCT
GGATGCCAGGCTGATCACATCTCGCTTACAGAAGATCGGCTATGAAGCTC
TCACACATGTTGGTTCTCTGGAAGAAGCGGTAAACTGGCTCAAGACTGCC
GCGCGCGTGGATGTGATCGTACTCGATCTCACGCTGCCCGACTCCATGGG
GTTGCATACGTTTCAATTTTTGCATCAGCGTTTCGCACACATTCCGATTG
TGATCTTGAGCGGACGCAACGATCAGGAACTGGCCATCAAAGCGGTCTCG
CTGGGCGCACAGGATTACGTTTTCAAATCCGAAGCAAGCAGCTGTGTGCT
GCAGCGATCTATCCGCTATGCCATCGAACGCAGGCACCGCCTGGAAATGG
AAATGAACATGATCGCGATGGACCGCGATCTGGAATATGCCCGGGAAATT
CAAAGGCATCTGCTGCCTCAGACATTGCCGGAAATCGCCGGCGTCGACAT
GGCAAGTGCTTACATCCCCGCTAACTGGACTGGCGGGGATTTTTTTGACG
TGATTCCGATCAGCCGCCAGGCGAAAAACAATCATGATCTCTGGCAACCC
GCGCACCTGATGAGCGAAGAAGACAAACTCAATTCCATCTGGGGTCTGAC
CATTGCGGATGTCAGCAGCCACGGCTTCGCGCCTTCGCTGATCATGGTCG
ATACCCGCCGTGTACTCCGAACTTGCTCCCACATTCTGCAGGATCCGGGT
GAGATTCTGACCTTTGCCAATCGTGCGGTAAGTGAGGTGGCCATTCTGCA
AAATACCTCATTACTGCTTGTCGAAGATAACATCCTGGATGCCAGGCTGA
TCACATCTCGCTTACAGAAGATCGGCTATGAAGCTCTCACACATGTTGGT
TCTCTGGAAGAAGCGGTAAACTGGCTCAAGACTGCCGCGCGCGTGGATGT
GATCGTACTCGATCTCACGCTGCCCGACTCCATGGGGTTGCATACGTTTC
AATTTTTGCATCAGCGTTTCGCACACATTCCGATTGTGATCTTGAGCGGA
CGCAACGATCAGGAACTGGCCATCAAAGCGGTCTCGCTGGGCGCACAGGA
TTACGTTTTCAAATCCGAAGCAAGCAGCTGTGTGCTGCAGCGATCTATCC
GCTATGCCATCGAACGCAGGCACCGCCTGGAAATGGAAATGAACATGATC
GCGATGGACCGCGATCTGGAATATGCCCGGGAAATTCAAAGGCATCTGCT
GCCTCAGACATTGCCGGAAATCGCCGGCGTCGACATGGCAAGTGCTTACA
TCCCCGCTAACTGGACTGGCGGGGATTTTTTTGACGTGATTCCGATCAGC
CGCCAGGCGAAAAACAATCATGATCTCTGGCAACCCGCGCACCTGATGAG
CGAAGAAGACAAACTCAATTCCATCTGGGGTCTGACCATTGCGGATGTCA
GCAGCCACGGCTTCGCGCCTTCGCTGATCATGGTCGATACCCGCCGTGTA
CTCCGAACTTGCTCCCACATTCTGCAGGATCCGGGTGAGATTCTGACCTT
TGCCAATCGTGCGGTAAGTGAG
back to top