mRNA_M-pyrifera_M_contig90425.20963.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90425.20963.1
Unique NamemRNA_M-pyrifera_M_contig90425.20963.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90425.20963.1 vs. uniprot
Match: A0A7R9Q446_9ACAR (Hypothetical protein n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9Q446_9ACAR)

HSP 1 Score: 112 bits (279), Expect = 1.980e-29
Identity = 47/87 (54.02%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   19 REKVPMQPGYTLMDWNRLCLSGKDLAGTRGAVLQVTMEELKRHRSEDDAWMALDGKVFNVTDYARFHPGGVRKLMLGAGRDATRLFS 279
            R +V ++PG++LMDW +LC    DL+GT G V+ VT+EEL++H + DD W+++ GKV+NVT Y  FHPGGV ++M GAG DAT LF+
Sbjct:   58 RTRVALKPGHSLMDWLKLCAKSPDLSGTGGQVMAVTVEELQKHNTLDDCWLSIRGKVYNVTQYLHFHPGGVDEMMRGAGSDATDLFN 144          
BLAST of mRNA_M-pyrifera_M_contig90425.20963.1 vs. uniprot
Match: A0A6J2U061_DROLE (cytochrome b5 reductase 4 n=1 Tax=Drosophila lebanonensis TaxID=7225 RepID=A0A6J2U061_DROLE)

HSP 1 Score: 118 bits (296), Expect = 2.390e-29
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 1
Query:   19 REKVPMQPGYTLMDWNRLCLSGKDLAGTRGAVLQVTMEELKRHRSEDDAWMALDGKVFNVTDYARFHPGGVRKLMLGAGRDATRLF 276
            R K  ++PGY+LM W RLC SG DL+GT G +L VT EEL RH + +DAW+A+ GKVFNVT Y  FHPGGV +L+ G G+DAT+LF
Sbjct:   44 RNKCALKPGYSLMSWIRLCKSGTDLSGTAGKILPVTNEELARHNNVNDAWLAIRGKVFNVTRYMEFHPGGVNELLRGTGKDATKLF 129          
BLAST of mRNA_M-pyrifera_M_contig90425.20963.1 vs. uniprot
Match: A0A137P9H5_CONC2 (Cytochrome b5 n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P9H5_CONC2)

HSP 1 Score: 110 bits (275), Expect = 4.470e-29
Identity = 48/88 (54.55%), Postives = 65/88 (73.86%), Query Frame = 1
Query:   13 RQREKVPMQPGYTLMDWNRLCLSGKDLAGTRGAVLQVTMEELKRHRSEDDAWMALDGKVFNVTDYARFHPGGVRKLMLGAGRDATRLF 276
            + R KV ++PGY+ MDW RL  SGKDL G     L +T+EEL +H+++DDAW A+D KV+N+T Y +FHPGGV++ M GAG+D T LF
Sbjct:   37 KSRNKVALEPGYSQMDWVRLTTSGKDLRGVTEFRL-ITLEELSQHKAQDDAWCAIDNKVYNITHYLKFHPGGVKQAMRGAGKDCTELF 123          
BLAST of mRNA_M-pyrifera_M_contig90425.20963.1 vs. uniprot
Match: UPI000BA81617 (cytochrome b5 reductase 4-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA81617)

HSP 1 Score: 116 bits (291), Expect = 1.300e-28
Identity = 53/88 (60.23%), Postives = 64/88 (72.73%), Query Frame = 1
Query:   16 QREKVPMQPGYTLMDWNRLCLSGKDLAGTRGAVLQVTMEELKRHRSEDDAWMALDGKVFNVTDYARFHPGGVRKLMLGAGRDATRLFS 279
            QR KV ++PG +LMDW RL  S +DLAGT+G +  VT EEL++H   DDAWM L GKVFNVT Y  FHPGG  +LM G G+DAT LF+
Sbjct:   27 QRNKVALKPGRSLMDWIRLTHSSQDLAGTKGQIQDVTEEELRKHNKADDAWMVLKGKVFNVTPYMEFHPGGEEELMRGVGKDATDLFN 114          
BLAST of mRNA_M-pyrifera_M_contig90425.20963.1 vs. uniprot
Match: UPI0003F0A6F1 (cytochrome b5 reductase 4-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0A6F1)

HSP 1 Score: 116 bits (291), Expect = 1.600e-28
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 SMAERQREKVPMQPGYTLMDWNRLCLSGKDLAGTRGAVLQVTMEELKRHRSEDDAWMALDGKVFNVTDYARFHPGGVRKLMLGAGRDATRLFS 279
            S+    R KV ++PG +LMDW RL  SG+DL G  G +  VT EEL +H  EDD WM + GKVFNVT Y  +HPGGV++LM GAG DAT+LF+
Sbjct:   41 SLQSTSRSKVELKPGRSLMDWIRLGKSGQDLTGVGGTLTNVTKEELSKHNKEDDVWMCIKGKVFNVTSYLEYHPGGVQELMRGAGNDATQLFN 133          
BLAST of mRNA_M-pyrifera_M_contig90425.20963.1 vs. uniprot
Match: A0A1B6IFP3_9HEMI (Cytochrome b5 heme-binding domain-containing protein (Fragment) n=3 Tax=Homalodisca TaxID=139475 RepID=A0A1B6IFP3_9HEMI)

HSP 1 Score: 110 bits (274), Expect = 2.490e-28
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   19 REKVPMQPGYTLMDWNRLCLSGKDLAGTRGAVLQVTMEELKRHRSEDDAWMALDGKVFNVTDYARFHPGGVRKLMLGAGRDATRLFS 279
            R KV ++PG++LMDW RL  SG DLAGT GA L VT  +L  H  +DDAW+++ GKV+NVT Y  FHPGG  +LM G G DAT++F+
Sbjct:    9 RNKVALKPGHSLMDWIRLGNSGNDLAGTGGAYLSVTKAQLAEHNKQDDAWLSIRGKVYNVTRYMDFHPGGPEELMKGVGTDATKIFN 95          
BLAST of mRNA_M-pyrifera_M_contig90425.20963.1 vs. uniprot
Match: A0A6P5VWL7_DROOB (cytochrome b5 reductase 4 n=2 Tax=Drosophila obscura TaxID=7282 RepID=A0A6P5VWL7_DROOB)

HSP 1 Score: 115 bits (289), Expect = 2.670e-28
Identity = 53/86 (61.63%), Postives = 62/86 (72.09%), Query Frame = 1
Query:   19 REKVPMQPGYTLMDWNRLCLSGKDLAGTRGAVLQVTMEELKRHRSEDDAWMALDGKVFNVTDYARFHPGGVRKLMLGAGRDATRLF 276
            R K  ++PGY+LM W RLC SG DL+GTRG V+ VT  EL  H    DAWMA+ G+VFNVT Y  FHPGGV +LM G GRDAT+LF
Sbjct:   55 RNKCALKPGYSLMSWIRLCNSGADLSGTRGRVVPVTRSELALHNKASDAWMAIRGRVFNVTRYMDFHPGGVDELMRGVGRDATKLF 140          
BLAST of mRNA_M-pyrifera_M_contig90425.20963.1 vs. uniprot
Match: UPI00148C73C4 (cytochrome b5 reductase 4 n=1 Tax=Drosophila innubila TaxID=198719 RepID=UPI00148C73C4)

HSP 1 Score: 115 bits (288), Expect = 3.880e-28
Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 1
Query:   19 REKVPMQPGYTLMDWNRLCLSGKDLAGTRGAVLQVTMEELKRHRSEDDAWMALDGKVFNVTDYARFHPGGVRKLMLGAGRDATRLF 276
            R K  ++PGY+LM W RLC SG DLAGT G V+ V+  EL RH   +DAWMA+ G+VFNVT Y  FHPGGV +LM G GRDAT+LF
Sbjct:   60 RNKCALKPGYSLMSWVRLCNSGADLAGTGGRVVPVSRSELARHNQVNDAWMAIRGRVFNVTRYMDFHPGGVDELMRGVGRDATKLF 145          
BLAST of mRNA_M-pyrifera_M_contig90425.20963.1 vs. uniprot
Match: UPI001E1D3E47 (cytochrome b5 reductase 4-like isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3E47)

HSP 1 Score: 115 bits (288), Expect = 4.030e-28
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 1
Query:   19 REKVPMQPGYTLMDWNRLCLSGKDLAGTRGAVLQVTMEELKRHRSEDDAWMALDGKVFNVTDYARFHPGGVRKLMLGAGRDATRLF 276
            R KV ++PG++LMDW RL  SGKDL G  G  ++VT EELK+H +E D W+AL GKV+NVT Y  FHPGG+ +LM GAG+DAT LF
Sbjct:   50 RNKVQLKPGHSLMDWIRLGRSGKDLTGVGGRKIEVTPEELKKHNTEKDCWIALRGKVYNVTSYLDFHPGGIDELMRGAGKDATALF 135          
BLAST of mRNA_M-pyrifera_M_contig90425.20963.1 vs. uniprot
Match: A0A1X0SAK8_RHIZD (Cytochrome b5 n=3 Tax=Rhizopus TaxID=4842 RepID=A0A1X0SAK8_RHIZD)

HSP 1 Score: 108 bits (269), Expect = 4.290e-28
Identity = 49/88 (55.68%), Postives = 66/88 (75.00%), Query Frame = 1
Query:   13 RQREKVPMQPGYTLMDWNRLCLSGKDLAGTRGAVLQVTMEELKRHRSEDDAWMALDGKVFNVTDYARFHPGGVRKLMLGAGRDATRLF 276
            R REKV ++PG++ +DW  L  SGKDL G    + +VT++ELK+H+S +DAW A+ GKV+N+T Y +FHPGGV+ LM  AGRD TRLF
Sbjct:   42 RGREKVMLEPGHSPLDWANLKASGKDLRGVP-ELCRVTLDELKKHKSPEDAWTAIQGKVYNITPYLKFHPGGVKDLMRVAGRDGTRLF 128          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90425.20963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9Q446_9ACAR1.980e-2954.02Hypothetical protein n=1 Tax=Medioppia subpectinat... [more]
A0A6J2U061_DROLE2.390e-2960.47cytochrome b5 reductase 4 n=1 Tax=Drosophila leban... [more]
A0A137P9H5_CONC24.470e-2954.55Cytochrome b5 n=1 Tax=Conidiobolus coronatus (stra... [more]
UPI000BA816171.300e-2860.23cytochrome b5 reductase 4-like n=1 Tax=Limulus pol... [more]
UPI0003F0A6F11.600e-2855.91cytochrome b5 reductase 4-like n=1 Tax=Saccoglossu... [more]
A0A1B6IFP3_9HEMI2.490e-2856.32Cytochrome b5 heme-binding domain-containing prote... [more]
A0A6P5VWL7_DROOB2.670e-2861.63cytochrome b5 reductase 4 n=2 Tax=Drosophila obscu... [more]
UPI00148C73C43.880e-2861.63cytochrome b5 reductase 4 n=1 Tax=Drosophila innub... [more]
UPI001E1D3E474.030e-2860.47cytochrome b5 reductase 4-like isoform X1 n=2 Tax=... [more]
A0A1X0SAK8_RHIZD4.290e-2855.68Cytochrome b5 n=3 Tax=Rhizopus TaxID=4842 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90425contigM-pyrifera_M_contig90425:31..309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score116.7
Seed ortholog evalue5.7e-24
Seed eggNOG ortholog7220.FBpp0140514
KEGG koko:K00326
KEGG ReactionR00100
KEGG Pathwayko00520,map00520
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0016491,GO:0055114
EggNOG free text desc.Oxidoreductase activity. It is involved in the biological process described with oxidation-reduction process
EggNOG OGs38F8I@33154,3BEE1@33208,3CZFX@33213,3SIBI@50557,41VSX@6656,44WPW@7147,45NY1@7214,COG0543@1,COG5274@1,KOG0534@2759,KOG0536@2759
EC1.6.2.2
COG Functional cat.C
Best tax levelDrosophilidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size279
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.144525-CDS-M-pyrifera_M_contig90425:30..3061622816816.144525-CDS-M-pyrifera_M_contig90425:30..306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90425 31..306 -
1692278195.2498052-CDS-M-pyrifera_M_contig90425:30..3061692278195.2498052-CDS-M-pyrifera_M_contig90425:30..306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90425 31..306 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.1624308-UTR-M-pyrifera_M_contig90425:306..3091622816816.1624308-UTR-M-pyrifera_M_contig90425:306..309Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90425 307..309 -
1692278195.2695603-UTR-M-pyrifera_M_contig90425:306..3091692278195.2695603-UTR-M-pyrifera_M_contig90425:306..309Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90425 307..309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90425.20963.1prot_M-pyrifera_M_contig90425.20963.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90425 31..306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90425.20963.1

>prot_M-pyrifera_M_contig90425.20963.1 ID=prot_M-pyrifera_M_contig90425.20963.1|Name=mRNA_M-pyrifera_M_contig90425.20963.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
MAERQREKVPMQPGYTLMDWNRLCLSGKDLAGTRGAVLQVTMEELKRHRS
EDDAWMALDGKVFNVTDYARFHPGGVRKLMLGAGRDATRLFS
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mRNA from alignment at M-pyrifera_M_contig90425:31..309-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90425.20963.1 ID=mRNA_M-pyrifera_M_contig90425.20963.1|Name=mRNA_M-pyrifera_M_contig90425.20963.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig90425:31..309- (Macrocystis pyrifera P11B4 male)
TCGATGGCAGAGCGACAGCGAGAGAAGGTTCCCATGCAGCCTGGCTACAC CCTCATGGACTGGAACCGTCTCTGCCTCTCTGGCAAGGACCTGGCAGGCA CGCGGGGGGCGGTGCTCCAGGTGACGATGGAGGAACTCAAGCGGCACAGG AGCGAAGACGACGCCTGGATGGCCCTCGACGGAAAGGTCTTCAACGTCAC GGACTACGCACGCTTCCACCCCGGTGGCGTGCGCAAGCTCATGCTCGGCG CCGGCCGCGACGCCACCCGCCTCTTCAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90425:31..309-

>mRNA_M-pyrifera_M_contig90425.20963.1 ID=mRNA_M-pyrifera_M_contig90425.20963.1|Name=mRNA_M-pyrifera_M_contig90425.20963.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig90425:31..309- (Macrocystis pyrifera P11B4 male)
ATGGCAGAGCGACAGCGAGAGAAGGTTCCCATGCAGCCTGGCTACACCCT
CATGGACTGGAACCGTCTCTGCCTCTCTGGCAAGGACCTGGCAGGCACGC
GGGGGGCGGTGCTCCAGGTGACGATGGAGGAACTCAAGCGGCACAGGAGC
GAAGACGACGCCTGGATGGCCCTCGACGGAAAGGTCTTCAACGTCACGGA
CTACGCACGCTTCCACCCCGGTGGCGTGCGCAAGCTCATGCTCGGCGCCG
GCCGCGACGCCACCCGCCTCTTCAGTATGGCAGAGCGACAGCGAGAGAAG
GTTCCCATGCAGCCTGGCTACACCCTCATGGACTGGAACCGTCTCTGCCT
CTCTGGCAAGGACCTGGCAGGCACGCGGGGGGCGGTGCTCCAGGTGACGA
TGGAGGAACTCAAGCGGCACAGGAGCGAAGACGACGCCTGGATGGCCCTC
GACGGAAAGGTCTTCAACGTCACGGACTACGCACGCTTCCACCCCGGTGG
CGTGCGCAAGCTCATGCTCGGCGCCGGCCGCGACGCCACCCGCCTCTTCA
GT
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