mRNA_M-pyrifera_M_contig90417.20959.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90417.20959.1
Unique NamemRNA_M-pyrifera_M_contig90417.20959.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90417.20959.1 vs. uniprot
Match: D8LF97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF97_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.360e-10
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 GDTDLARNMLQRSVSLLRRFPQAESIDLTFATAETEERLRVWVHKTLSV 147
            GD+    +ML+RS+SLLRR P  ESIDLTFAT + EE LR+WVHK L+V
Sbjct:   94 GDSHNTASMLRRSLSLLRRHPHPESIDLTFATPKLEESLRLWVHKRLAV 142
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90417.20959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LF97_ECTSI1.360e-1063.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90417contigM-pyrifera_M_contig90417:144..296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_004140.1
Exons1
Model size153
Cds size129
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816815.933964-UTR-M-pyrifera_M_contig90417:143..1671622816815.933964-UTR-M-pyrifera_M_contig90417:143..167Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90417 144..167 +
1692278195.1348577-UTR-M-pyrifera_M_contig90417:143..1671692278195.1348577-UTR-M-pyrifera_M_contig90417:143..167Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90417 144..167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816815.9478078-CDS-M-pyrifera_M_contig90417:167..2961622816815.9478078-CDS-M-pyrifera_M_contig90417:167..296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90417 168..296 +
1692278195.1527765-CDS-M-pyrifera_M_contig90417:167..2961692278195.1527765-CDS-M-pyrifera_M_contig90417:167..296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90417 168..296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90417.20959.1prot_M-pyrifera_M_contig90417.20959.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90417 168..296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90417.20959.1

>prot_M-pyrifera_M_contig90417.20959.1 ID=prot_M-pyrifera_M_contig90417.20959.1|Name=mRNA_M-pyrifera_M_contig90417.20959.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
MLQRSVSLLRRFPQAESIDLTFATAETEERLRVWVHKTLSVK*
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mRNA from alignment at M-pyrifera_M_contig90417:144..296+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90417.20959.1 ID=mRNA_M-pyrifera_M_contig90417.20959.1|Name=mRNA_M-pyrifera_M_contig90417.20959.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig90417:144..296+ (Macrocystis pyrifera P11B4 male)
GGAGACACAGACCTGGCACGGAATATGCTTCAGCGCAGTGTCAGCCTGCT
ACGGCGTTTCCCTCAAGCTGAGTCGATCGACCTCACCTTCGCCACGGCAG
AGACGGAGGAACGCCTCCGGGTTTGGGTGCACAAGACGCTCTCTGTCAAG
TAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90417:144..296+

>mRNA_M-pyrifera_M_contig90417.20959.1 ID=mRNA_M-pyrifera_M_contig90417.20959.1|Name=mRNA_M-pyrifera_M_contig90417.20959.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig90417:144..296+ (Macrocystis pyrifera P11B4 male)
ATGCTTCAGCGCAGTGTCAGCCTGCTACGGCGTTTCCCTCAAGCTGAGTC
GATCGACCTCACCTTCGCCACGGCAGAGACGGAGGAACGCCTCCGGGTTT
GGGTGCACAAGACGCTCTCTGTCAAGTAAATGCTTCAGCGCAGTGTCAGC
CTGCTACGGCGTTTCCCTCAAGCTGAGTCGATCGACCTCACCTTCGCCAC
GGCAGAGACGGAGGAACGCCTCCGGGTTTGGGTGCACAAGACGCTCTCTG
TCAAGTAA
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