mRNA_M-pyrifera_M_contig90351.20945.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90351.20945.1
Unique NamemRNA_M-pyrifera_M_contig90351.20945.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90351.20945.1 vs. uniprot
Match: A0A5A8EB24_CAFRO (MI domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EB24_CAFRO)

HSP 1 Score: 203 bits (517), Expect = 2.140e-56
Identity = 105/238 (44.12%), Postives = 155/238 (65.13%), Query Frame = 1
Query:   76 RAQVLLDLLRDLRNNHQRAGQKRAGERGEIVRKWIGDFAKRSGKAGVDRRLCVKWDDLAAIRERGRWWVVGASWKGRTDER---VEKGMR-SGGXXXXXXXXXMGGLLEEKAKKLRMNTEVRRQVFEALMGAKGVDDAVARLMGLKLRGPSEREIPRVILDCAGQEKRFNLFYAAVIARLCELRAPMRFTTQLSLWDQLKVMAEYSQRRQYNLAKTTANLILRNTHSISALKIFDLSR 777
            R +V+L LL D++NN +R   ++  +RG  +RKW+   A+R+ K GV+RR+ V WDDL A   +GRWW+VGASW G  D +    + G    GG             L E A  +   T+VRR+VF A+MG  G+D+AV R+  L L+GP+ERE+ RV+++CA + KR++ F+AA+ AR+CE++   RFT QL+LWD  K + E S RR YNLA+ +A+L+LR + S++ LK FD+S+
Sbjct:  591 RTKVMLGLLADVKNNRRRQSDEQMRDRGTTMRKWLASLAQRNHKEGVERRIRVGWDDLCAADSKGRWWLVGASWAGHGDGKSTVADAGAELGGGLKSASAVSERDAELYEAAAGMGFVTDVRRRVFAAIMGGGGIDEAVERVSRLGLKGPAEREVVRVLVECACRSKRYSPFFAALGARICEVQPKARFTFQLALWDAFKSLEEASDRRVYNLARLSADLLLRFSLSLAVLKAFDVSK 828          
BLAST of mRNA_M-pyrifera_M_contig90351.20945.1 vs. uniprot
Match: A0A812KC09_9DINO (NOM1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KC09_9DINO)

HSP 1 Score: 203 bits (517), Expect = 5.030e-56
Identity = 105/238 (44.12%), Postives = 155/238 (65.13%), Query Frame = 1
Query:   76 RAQVLLDLLRDLRNNHQRAGQKRAGERGEIVRKWIGDFAKRSGKAGVDRRLCVKWDDLAAIRERGRWWVVGASWKGRTDER---VEKGMR-SGGXXXXXXXXXMGGLLEEKAKKLRMNTEVRRQVFEALMGAKGVDDAVARLMGLKLRGPSEREIPRVILDCAGQEKRFNLFYAAVIARLCELRAPMRFTTQLSLWDQLKVMAEYSQRRQYNLAKTTANLILRNTHSISALKIFDLSR 777
            R +V+L LL D++NN +R   ++  +RG  +RKW+   A+R+ K GV+RR+ V WDDL A   +GRWW+VGASW G  D +    + G    GG             L E A  +   T+VRR+VF A+MG  G+D+AV R+  L L+GP+ERE+ RV+++CA + KR++ F+AA+ AR+CE++   RFT QL+LWD  K + E S RR YNLA+ +A+L+LR + S++ LK FD+S+
Sbjct: 1425 RTKVMLGLLADVKNNRRRQSDEQMRDRGTTMRKWLASLAQRNHKEGVERRIRVGWDDLCAADSKGRWWLVGASWAGHGDGKSTVADAGAELGGGLKSASAVSERDAELYEAAAGMGFVTDVRRRVFAAIMGGGGIDEAVERVSRLGLKGPAEREVVRVLVECACRSKRYSPFFAALGARICEVQPKARFTFQLALWDAFKSLEEASDRRVYNLARLSADLLLRFSLSLAVLKAFDVSK 1662          
BLAST of mRNA_M-pyrifera_M_contig90351.20945.1 vs. uniprot
Match: A0A482RSA2_9ARCH (MI domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSA2_9ARCH)

HSP 1 Score: 172 bits (435), Expect = 4.320e-47
Identity = 102/257 (39.69%), Postives = 144/257 (56.03%), Query Frame = 1
Query:   70 SIRAQVLLDLLRDLRNNHQRAGQKRAGERGEIVRKWIGDFA-KRSGKAGVDRRLCVKWDDLAAIRERGRWWVVGASWKGRT-----------DERV---EKGMRSGGXXXXXXXXXMGGLLEEK-------AKKLRMNTEVRRQVFEALMGAKGVDDAVARLMGLKLRGPSEREIPRVILDCAGQEKRFNLFYAAVIARLCELRAPMRFTTQLSLWDQLKVMAEYSQ--RRQYNLAKTTANLILRNTHSISALKIFD 768
            S R +VL +L+ D++NN +R   ++A ER   +RKW+   A K SG  GVDRRL V W DL +I E+GRWW+VGASW GRT           DE     + G+ S             G   E        A K+RMNT VRR +F A+MGA   + A+ R++ L L+G +ERE+ RV++DCAGQE  +N +Y A+   LC      +FT QL+ WD +K   + +   RR YNLA+  A+L+     +++ LK+ D
Sbjct:   97 SARVRVLSELILDVKNNRKRQSHEQAAERAAQLRKWLARLASKTSGVEGVDRRLRVTWADLMSISEKGRWWLVGASWVGRTAAGLTSSATATDEAAVDADGGILSAHTKHHDPTAAGAGRASEADAKLLALATKMRMNTAVRRSIFIAVMGADNAEAAMDRVLRLNLKGAAEREVIRVLMDCAGQEASYNPYYGALTVLLCTYNHHFKFTAQLAYWDAIKTFDDETTTPRRIYNLARLFAHLLCFGAVTLATLKVVD 353          
BLAST of mRNA_M-pyrifera_M_contig90351.20945.1 vs. uniprot
Match: A0A835YM02_9STRA (MI domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM02_9STRA)

HSP 1 Score: 156 bits (395), Expect = 8.080e-40
Identity = 104/254 (40.94%), Postives = 137/254 (53.94%), Query Frame = 1
Query:   73 IRAQVLLDLLRDLRNNHQRAGQKRAGERGEIVRKWIGDFAKRSGKAGVDRRLCVKWDDLA-AIRERGRWWVVGASWKGRTDERVEKGMRSGGXXXXXXXXXMGGL-----------------LEEKAKKLRMNTEVRRQVFEALMGAKGVDDAVARLMGLKLRGPSEREIP-------RVILDCAGQEKRFNLFYAAVIARLCELRAPMRFTTQLSLWDQLKVMAEYSQRRQYNLAKTTANLILRNTHSISALK 759
            +R Q +LD + DL+NN +RA      +R + +R+W+G      G  G D  L V W DL   ++ RGRWW+VG++W G        G  +GGXXXXXXXXX                     L + A   RMNT+VRR VF A+MGA   +DA  RLM L LRG  +RE P       RV++DC GQEK +N +YA + ARLCE     +FT QL+ WD  K   +   RR  NLA+  A+L+L    SI  +K
Sbjct:  494 VRVQFMLDAIADLKNNKRRAAAAGGQDRSQRLRRWLGTVKSAKGGVGADTSLRVGWSDLTDGVKTRGRWWLVGSAWTG-------VGGAAGGXXXXXXXXXXXXXXXXXXXXXDDEDDDVSRLAQLASHQRMNTDVRRAVFCAIMGAADFEDAFERLMRLDLRGQQDREDPQQLRKVVRVLVDCCGQEKAYNPYYALLGARLCEFDTKYKFTFQLAFWDAFKQFDDMPARRAANLARLLAHLVLHKHLSIGVVK 740          
BLAST of mRNA_M-pyrifera_M_contig90351.20945.1 vs. uniprot
Match: A0A484E4Y1_BRELC (MI domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E4Y1_BRELC)

HSP 1 Score: 147 bits (370), Expect = 4.180e-38
Identity = 89/240 (37.08%), Postives = 131/240 (54.58%), Query Frame = 1
Query:   76 RAQVLLDLLRDLRNNHQRAGQKRAGERGEIV-----RKWIGDFAKRSGKAGVDRRLCVKWDDLAAIRERGRWWVVGASWKGRTDERVEKGMRSGGXXXXXXXXXMGGLLEEKAKKLRMNTEVRRQVFEALMGAKGVDDAVARLMGLKLRGPSEREIPRVILDCAGQEKRFNLFYAAVIARLCELRAPMRFTTQLSLWDQLKVMAEYSQRRQYNLAKTTANLILRNTHSISALKIFDLSRI 780
            R   +LDL+ DL  + ++A ++     G ++     +KW+G    R G A    R+ ++  +L    E GRWW+VG +W G      ++ + S              LL+  A+K RMNT+VR+++F ALMGA    DA  RLM L L+   EREI RV+L C GQE RFN FY A+  +LCE+ +  +FT QL+ WD  K M     R  +N A+  A L+LR   S+S LK+ D +++
Sbjct:   77 RIGFILDLIYDLNKSSKQAKRRTESASGGVLDLAPLKKWLGRVKTRCGNANNPLRVSLQ--ELLHADEDGRWWIVGGTWVG-----FQQKLASDDVNDDENAVETNRLLQ-LAEKQRMNTDVRKKIFVALMGANDCFDAYERLMQLHLKEKQEREIVRVLLRCGGQENRFNKFYLALAEKLCEMDSRYKFTFQLAFWDIFKQMETLKPRTLFNQAQILAGLVLRGHLSLSCLKVLDFTQL 308          
BLAST of mRNA_M-pyrifera_M_contig90351.20945.1 vs. uniprot
Match: D8LF71_ECTSI (MI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF71_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 7.420e-37
Identity = 93/276 (33.70%), Postives = 143/276 (51.81%), Query Frame = 1
Query:   28 AANSATSSSSTSTKSIRAQVLLDLLRDLRNNHQRAGQKRAGERGEIVRKWIGDFAKRSGKAGV------DRRLCVKWDDLAAIRERGRWWVVGASWKGR-------------------TDERVEKGMRSGGXXXXXXXXXMGGLLEEKAKKLRMNTEVRRQVFEALMGAKGVDDAVARLMGLKLRGPSEREIPRVILDCAGQEKRFNLFYAAVIARLCELRAPMRFTTQLSLWDQLKVMAEYSQRRQYNLAKTTANLILRNTHSISALKIFDLSRI 780
            AA SA   ++T+    RA+ +LD + +L+ N +   Q++  E G  VRKW+G      G          D  L V W +L +   +GRWW VGA+W GR                       +     SGG           GLL   A++ RMNT+VRR VF A++G+   +DA  +++ L L+G  EREI RVI++C  QE  +N FYA +  R+C+ +  +RFT Q++ WD LK + + + RR  +LA+  A+L++R   S++ LK  D+  +
Sbjct:  532 AAASAAGDANTALGGSRARYILDTILELQGNKRSRIQEQGQESGRRVRKWLGSVKAAKGXXXXXXXXXXDASLRVTWSELVSTENKGRWWRVGAAWAGRGASASSXXXXXXXXXXXXXXXXXLSGSTGSGGANDSEAV----GLLALAARQ-RMNTDVRRSVFVAIVGSSDCEDAFEKILRLNLKGAQEREIARVIVECCSQEGSYNPFYAHLAERVCDRQPKLRFTFQVAFWDALKTLDDGAARRAGSLARLMAHLVVRKQLSLTVLKTVDVQEL 802          
BLAST of mRNA_M-pyrifera_M_contig90351.20945.1 vs. uniprot
Match: W7U1F6_9STRA (Nucleolar mif4g domain-containing protein 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1F6_9STRA)

HSP 1 Score: 145 bits (367), Expect = 3.620e-36
Identity = 95/274 (34.67%), Postives = 136/274 (49.64%), Query Frame = 1
Query:   76 RAQVLLDLLRDLRNNHQRAGQKRAGERGEIVRKWI------GDFAKRSGKAGVDRRLCVKWDDLAAIRERGRWWVVGASWKGRTDERVEKGMRS----GGXXXXXXXXXMGGLLEEK----AKKLRMNTEVRRQVFEALMGAKGVDDAVARLMGLKLRGPSEREIPRVILDCAGQEKRFNLFYAAVIARLCELRAPMRFTTQLSLWDQLKVM-------------------AEYSQRRQ------YNLAKTTANLILRNTHSISALKIFDLSRI 780
            R + +L+ L DL+NN +R  Q + GER + +RK +      G   K  G       L V W+D+     RGRWW VGA+W G+  ER E G       G          +   L+EK    A + RMNT+VRR +F ++M A    DA  RLM L L    ERE+ RVI+DC GQE+ +N +YA ++ RLCE     +FT QL+ WD  KV+                    E  +RR        NLA+  ++LI +   S++ LK+ D++ +
Sbjct:  342 RVRHMLETLNDLKNNKRRQAQLQEGERTQRLRKLVLRARSGGMVGKGQGXXXXGETLHVSWEDMRDSASRGRWWRVGAAWAGKEAERGEGGQPGVAGRGQGFPMAAASPVSSSLQEKINSLASRQRMNTDVRRAIFASVMTACDYQDAFERLMRLNLSDKQEREVVRVIVDCLGQERAYNPYYAYLLGRLCEYHDKYKFTLQLTYWDIFKVLDQENAGFGADDGEGRSTPGGEKVERRAAGGHKAVNLARALSHLIAKGWLSLAVLKVVDVASV 615          
BLAST of mRNA_M-pyrifera_M_contig90351.20945.1 vs. uniprot
Match: A0A0N7L8A8_PLAHL (Nucleolar mif4g domain-containing protein 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L8A8_PLAHL)

HSP 1 Score: 146 bits (368), Expect = 3.660e-36
Identity = 85/240 (35.42%), Postives = 131/240 (54.58%), Query Frame = 1
Query:   76 RAQVLLDLLRDLRNNHQRAGQKRAGERGEIV-----RKWIGDFAKRSGKAGVDRRLCVKWDDLAAIRERGRWWVVGASWKGRTDERVEKGMRSGGXXXXXXXXXMGGLLEEKAKKLRMNTEVRRQVFEALMGAKGVDDAVARLMGLKLRGPSEREIPRVILDCAGQEKRFNLFYAAVIARLCELRAPMRFTTQLSLWDQLKVMAEYSQRRQYNLAKTTANLILRNTHSISALKIFDLSRI 780
            R + +LDL+ DL+ + +R+   ++   G  +     +KW+G    R G A    R+ ++  +L    E GRWWVVG +W G   ++      +           +     + A+K RMNT++R+Q+F ALMGA    DA  RL+ L L+   EREI RVIL C GQE +FN FY  +   LC++    +FT QL+ WD  K+M     R+ +N A+  A L+L NT S+S+LK+ D +++
Sbjct:  549 RVRFILDLIYDLKKSPKRSKGGKSYASGSALDISSLKKWLGRVKTRCGNANNPLRVSLQ--ELLDADENGRWWVVGGTWVGYQRQKSTSDESNDNVTNDETDRLL-----KLAEKQRMNTDIRKQIFVALMGATDSFDAYERLLQLHLKEKQEREIVRVILHCCGQETKFNKFYLVLAETLCKMDPRYKFTFQLAFWDIFKLMTSSKPRKLFNQAQMLAGLVLSNTLSLSSLKVLDFTQL 781          
BLAST of mRNA_M-pyrifera_M_contig90351.20945.1 vs. uniprot
Match: A0A484E3P8_BRELC (MI domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3P8_BRELC)

HSP 1 Score: 146 bits (368), Expect = 3.660e-36
Identity = 89/240 (37.08%), Postives = 131/240 (54.58%), Query Frame = 1
Query:   76 RAQVLLDLLRDLRNNHQRAGQKRAGERGEIV-----RKWIGDFAKRSGKAGVDRRLCVKWDDLAAIRERGRWWVVGASWKGRTDERVEKGMRSGGXXXXXXXXXMGGLLEEKAKKLRMNTEVRRQVFEALMGAKGVDDAVARLMGLKLRGPSEREIPRVILDCAGQEKRFNLFYAAVIARLCELRAPMRFTTQLSLWDQLKVMAEYSQRRQYNLAKTTANLILRNTHSISALKIFDLSRI 780
            R   +LDL+ DL  + ++A ++     G ++     +KW+G    R G A    R+ ++  +L    E GRWW+VG +W G      ++ + S              LL+  A+K RMNT+VR+++F ALMGA    DA  RLM L L+   EREI RV+L C GQE RFN FY A+  +LCE+ +  +FT QL+ WD  K M     R  +N A+  A L+LR   S+S LK+ D +++
Sbjct:  549 RIGFVLDLIYDLNKSSKQAKRRTDSASGGVLDFAPLKKWLGRVKTRCGNANNPLRVSLQ--ELLHADEDGRWWIVGGTWVG-----FQQKLASDDVNDDENAVETNRLLQ-LAEKQRMNTDVRKKIFVALMGANDCFDAYERLMQLHLKEKQEREIVRVLLRCGGQENRFNKFYLALAEKLCEMDSRYKFTFQLAFWDIFKQMETLKPRTLFNQAQILAGLVLRGHLSLSCLKVLDFTQL 780          
BLAST of mRNA_M-pyrifera_M_contig90351.20945.1 vs. uniprot
Match: A0A3M6VHS8_9STRA (MI domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHS8_9STRA)

HSP 1 Score: 145 bits (367), Expect = 5.100e-36
Identity = 85/241 (35.27%), Postives = 130/241 (53.94%), Query Frame = 1
Query:   76 RAQVLLDLLRDLRNNHQRAGQKRAGERG------EIVRKWIGDFAKRSGKAGVDRRLCVKWDDLAAIRERGRWWVVGASWKGRTDERVEKGMRSGGXXXXXXXXXMGGLLEEKAKKLRMNTEVRRQVFEALMGAKGVDDAVARLMGLKLRGPSEREIPRVILDCAGQEKRFNLFYAAVIARLCELRAPMRFTTQLSLWDQLKVMAEYSQRRQYNLAKTTANLILRNTHSISALKIFDLSRI 780
            R + +LDL+ +L+ + + +  + AG  G        ++KW+G    R G A    R+ +K  +L    E GRWW+VG +W G   ++   G  +               L + A+K  MNT+VR+++F ALMGA    DA  RL+ L L+   EREI RV+L C GQE +FN +Y  +  +LCE+    +FT QL+ WD  K M     RR YN A+  + L+L ++ S+S LKI D +++
Sbjct:  575 RVRFILDLIYNLKKSSKHSKGRNAGSAGGGAIDVSSLKKWLGRVKTRCGNANNPLRVSLK--ELLNADEDGRWWIVGGTWVGYQQQKSTDGAANDDDAHETVRET--DRLLKLAEKQHMNTDVRKKIFVALMGATDCFDAYERLLQLHLKEKQEREIVRVLLHCCGQENKFNRYYLVLAEKLCEMDPRYKFTFQLAFWDIFKQMKSLKPRRLYNQAQMFSGLVLSSSLSLSCLKILDFTQL 811          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90351.20945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EB24_CAFRO2.140e-5644.12MI domain-containing protein n=4 Tax=Cafeteria roe... [more]
A0A812KC09_9DINO5.030e-5644.12NOM1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A482RSA2_9ARCH4.320e-4739.69MI domain-containing protein n=1 Tax=archaeon TaxI... [more]
A0A835YM02_9STRA8.080e-4040.94MI domain-containing protein n=1 Tax=Tribonema min... [more]
A0A484E4Y1_BRELC4.180e-3837.08MI domain-containing protein n=1 Tax=Bremia lactuc... [more]
D8LF71_ECTSI7.420e-3733.70MI domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
W7U1F6_9STRA3.620e-3634.67Nucleolar mif4g domain-containing protein 1 n=1 Ta... [more]
A0A0N7L8A8_PLAHL3.660e-3635.42Nucleolar mif4g domain-containing protein 1 n=1 Ta... [more]
A0A484E3P8_BRELC3.660e-3637.08MI domain-containing protein n=1 Tax=Bremia lactuc... [more]
A0A3M6VHS8_9STRA5.100e-3635.27MI domain-containing protein n=2 Tax=Peronospora e... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90351contigM-pyrifera_M_contig90351:5..784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue5e-33
Seed eggNOG ortholog2880.D8LF71
Preferred nameNOM1
KEGG koko:K17583
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0001942,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005677,GO:0005730,GO:0005737,GO:0006139,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006349,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008283,GO:0008544,GO:0009507,GO:0009536,GO:0009555,GO:0009628,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009909,GO:0009987,GO:0010026,GO:0010154,GO:0010214,GO:0010468,GO:0016043,GO:0017053,GO:0019219,GO:0019222,GO:0021700,GO:0022008,GO:0022404,GO:0022405,GO:0022414,GO:0022607,GO:0022613,GO:0030154,GO:0031323,GO:0031461,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040029,GO:0042254,GO:0042274,GO:0042303,GO:0042633,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043588,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0046483,GO:0048229,GO:0048316,GO:0048366,GO:0048367,GO:0048513,GO:0048518,GO:0048522,GO:0048580,GO:0048608,GO:0048731,GO:0048820,GO:0048827,GO:0048831,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051239,GO:0051276,GO:0051726,GO:0060255,GO:0060429,GO:0061458,GO:0065007,GO:0070013,GO:0070828,GO:0071103,GO:0071514,GO:0071695,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090558,GO:0090568,GO:0097078,GO:0097159,GO:0098773,GO:0099402,GO:1901360,GO:1901363,GO:1902494,GO:1990234,GO:2000026,GO:2000241,GO:2000653
EggNOG free text desc.hair follicle maturation
EggNOG OGsKOG2141@1,KOG2141@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Exons1
Model size780
Cds size780
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816815.2731571-CDS-M-pyrifera_M_contig90351:4..7841622816815.2731571-CDS-M-pyrifera_M_contig90351:4..784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90351 5..784 -
1692278194.767456-CDS-M-pyrifera_M_contig90351:4..7841692278194.767456-CDS-M-pyrifera_M_contig90351:4..784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90351 5..784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90351.20945.1prot_M-pyrifera_M_contig90351.20945.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90351 5..784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90351.20945.1

>prot_M-pyrifera_M_contig90351.20945.1 ID=prot_M-pyrifera_M_contig90351.20945.1|Name=mRNA_M-pyrifera_M_contig90351.20945.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=260bp
PEASRAIIEAANSATSSSSTSTKSIRAQVLLDLLRDLRNNHQRAGQKRAG
ERGEIVRKWIGDFAKRSGKAGVDRRLCVKWDDLAAIRERGRWWVVGASWK
GRTDERVEKGMRSGGRGGSGGGEGMGGLLEEKAKKLRMNTEVRRQVFEAL
MGAKGVDDAVARLMGLKLRGPSEREIPRVILDCAGQEKRFNLFYAAVIAR
LCELRAPMRFTTQLSLWDQLKVMAEYSQRRQYNLAKTTANLILRNTHSIS
ALKIFDLSRI
back to top

mRNA from alignment at M-pyrifera_M_contig90351:5..784-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90351.20945.1 ID=mRNA_M-pyrifera_M_contig90351.20945.1|Name=mRNA_M-pyrifera_M_contig90351.20945.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig90351:5..784- (Macrocystis pyrifera P11B4 male)
CCCGAGGCATCGAGAGCGATCATCGAGGCTGCAAACTCTGCAACGTCATC TTCATCTACTTCCACAAAATCTATCCGTGCGCAAGTCTTGTTGGATTTGC TGCGTGATTTGCGCAACAACCATCAAAGAGCAGGACAAAAGCGTGCTGGA GAAAGGGGTGAGATAGTGCGAAAGTGGATTGGGGACTTTGCAAAGAGATC TGGAAAAGCTGGTGTGGATAGGAGATTATGTGTGAAATGGGATGACTTGG CTGCAATTCGTGAACGAGGAAGATGGTGGGTTGTTGGGGCATCTTGGAAA GGGAGGACGGATGAAAGAGTGGAGAAGGGTATGAGAAGTGGAGGAAGGGG CGGGAGTGGGGGTGGTGAAGGGATGGGAGGGTTGTTGGAGGAGAAAGCAA AGAAGTTGAGGATGAATACAGAGGTGCGAAGACAAGTGTTTGAAGCGTTA ATGGGCGCAAAAGGAGTGGATGATGCGGTTGCACGGTTGATGGGATTGAA GTTGAGGGGACCATCAGAGAGAGAGATTCCAAGAGTGATTCTTGACTGTG CAGGCCAAGAGAAAAGATTCAATTTGTTCTATGCCGCTGTGATAGCAAGA TTGTGTGAGTTGAGAGCACCAATGCGGTTTACAACCCAGCTCTCCTTATG GGATCAGCTCAAAGTTATGGCTGAGTACTCACAACGTCGACAATACAACC TTGCGAAAACAACTGCAAACCTCATCCTCCGAAACACCCACTCAATTTCT GCCCTCAAAATCTTTGATCTCTCACGAATC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90351:5..784-

>mRNA_M-pyrifera_M_contig90351.20945.1 ID=mRNA_M-pyrifera_M_contig90351.20945.1|Name=mRNA_M-pyrifera_M_contig90351.20945.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1560bp|location=Sequence derived from alignment at M-pyrifera_M_contig90351:5..784- (Macrocystis pyrifera P11B4 male)
CCCGAGGCATCGAGAGCGATCATCGAGGCTGCAAACTCTGCAACGTCATC
TTCATCTACTTCCACAAAATCTATCCGTGCGCAAGTCTTGTTGGATTTGC
TGCGTGATTTGCGCAACAACCATCAAAGAGCAGGACAAAAGCGTGCTGGA
GAAAGGGGTGAGATAGTGCGAAAGTGGATTGGGGACTTTGCAAAGAGATC
TGGAAAAGCTGGTGTGGATAGGAGATTATGTGTGAAATGGGATGACTTGG
CTGCAATTCGTGAACGAGGAAGATGGTGGGTTGTTGGGGCATCTTGGAAA
GGGAGGACGGATGAAAGAGTGGAGAAGGGTATGAGAAGTGGAGGAAGGGG
CGGGAGTGGGGGTGGTGAAGGGATGGGAGGGTTGTTGGAGGAGAAAGCAA
AGAAGTTGAGGATGAATACAGAGGTGCGAAGACAAGTGTTTGAAGCGTTA
ATGGGCGCAAAAGGAGTGGATGATGCGGTTGCACGGTTGATGGGATTGAA
GTTGAGGGGACCATCAGAGAGAGAGATTCCAAGAGTGATTCTTGACTGTG
CAGGCCAAGAGAAAAGATTCAATTTGTTCTATGCCGCTGTGATAGCAAGA
TTGTGTGAGTTGAGAGCACCAATGCGGTTTACAACCCAGCTCTCCTTATG
GGATCAGCTCAAAGTTATGGCTGAGTACTCACAACGTCGACAATACAACC
TTGCGAAAACAACTGCAAACCTCATCCTCCGAAACACCCACTCAATTTCT
GCCCTCAAAATCTTTGATCTCTCACGAATCCCCGAGGCATCGAGAGCGAT
CATCGAGGCTGCAAACTCTGCAACGTCATCTTCATCTACTTCCACAAAAT
CTATCCGTGCGCAAGTCTTGTTGGATTTGCTGCGTGATTTGCGCAACAAC
CATCAAAGAGCAGGACAAAAGCGTGCTGGAGAAAGGGGTGAGATAGTGCG
AAAGTGGATTGGGGACTTTGCAAAGAGATCTGGAAAAGCTGGTGTGGATA
GGAGATTATGTGTGAAATGGGATGACTTGGCTGCAATTCGTGAACGAGGA
AGATGGTGGGTTGTTGGGGCATCTTGGAAAGGGAGGACGGATGAAAGAGT
GGAGAAGGGTATGAGAAGTGGAGGAAGGGGCGGGAGTGGGGGTGGTGAAG
GGATGGGAGGGTTGTTGGAGGAGAAAGCAAAGAAGTTGAGGATGAATACA
GAGGTGCGAAGACAAGTGTTTGAAGCGTTAATGGGCGCAAAAGGAGTGGA
TGATGCGGTTGCACGGTTGATGGGATTGAAGTTGAGGGGACCATCAGAGA
GAGAGATTCCAAGAGTGATTCTTGACTGTGCAGGCCAAGAGAAAAGATTC
AATTTGTTCTATGCCGCTGTGATAGCAAGATTGTGTGAGTTGAGAGCACC
AATGCGGTTTACAACCCAGCTCTCCTTATGGGATCAGCTCAAAGTTATGG
CTGAGTACTCACAACGTCGACAATACAACCTTGCGAAAACAACTGCAAAC
CTCATCCTCCGAAACACCCACTCAATTTCTGCCCTCAAAATCTTTGATCT
CTCACGAATC
back to top