mRNA_M-pyrifera_M_contig90289.20934.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90289.20934.1
Unique NamemRNA_M-pyrifera_M_contig90289.20934.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90289.20934.1 vs. uniprot
Match: A0A497LBI1_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A497LBI1_9ARCH)

HSP 1 Score: 53.9 bits (128), Expect = 9.150e-6
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   31 IGAYNPDTATFFLRNANSSGDADVAVFNYGIPGWVPLVG 147
            +G Y+P TATFFLRN+NSSG AD+  F YG P W+P+ G
Sbjct:    1 MGVYDPSTATFFLRNSNSSGFADIT-FVYGNPNWIPIAG 38
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BLAST of mRNA_M-pyrifera_M_contig90289.20934.1 vs. uniprot
Match: A0A1G2JCH4_9BACT (NodB homology domain-containing protein n=1 Tax=Candidatus Staskawiczbacteria bacterium RIFOXYC1_FULL_38_18 TaxID=1802229 RepID=A0A1G2JCH4_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 2.730e-5
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 GDWDGDGTDTIGAYNPDTATFFLRNANSSGDADVAVFNYG 120
            GDWDGDGT TIG YN  T+ F+LRN+N++G AD+  F YG
Sbjct:   50 GDWDGDGTATIGLYNLKTSIFYLRNSNTTGVADIT-FGYG 88
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BLAST of mRNA_M-pyrifera_M_contig90289.20934.1 vs. uniprot
Match: A0A841BJS5_9ACTN (Uncharacterized protein n=1 Tax=Allocatelliglobosispora scoriae TaxID=643052 RepID=A0A841BJS5_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 4.670e-5
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 GDWDGDGTDTIGAYNPDTATFFLRNANSSGDADVAVFNYGIPG 129
            GDW+GDGT TIG+++  ++TF+L+N+NSSG AD  VF YG  G
Sbjct:  202 GDWNGDGTTTIGSWDTASSTFYLKNSNSSGAADY-VFGYGCSG 243
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BLAST of mRNA_M-pyrifera_M_contig90289.20934.1 vs. uniprot
Match: A0A3A0G2M8_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3A0G2M8_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 5.020e-5
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 GDWDGDGTDTIGAYNPDTATFFLRNANSSGDADVAVFNYGI 123
            GDW+GDG+ TIG+Y P    FFLRNANS+G AD   F + +
Sbjct:  164 GDWNGDGSSTIGSYAPAIERFFLRNANSAGAADAGNFKFNV 204
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90289.20934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A497LBI1_9ARCH9.150e-661.54Uncharacterized protein n=1 Tax=Candidatus Bathyar... [more]
A0A1G2JCH4_9BACT2.730e-562.50NodB homology domain-containing protein n=1 Tax=Ca... [more]
A0A841BJS5_9ACTN4.670e-558.14Uncharacterized protein n=1 Tax=Allocatelliglobosi... [more]
A0A3A0G2M8_9PROT5.020e-556.10Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90289contigM-pyrifera_M_contig90289:3..449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.6663396-CDS-M-pyrifera_M_contig90289:2..4491622816814.6663396-CDS-M-pyrifera_M_contig90289:2..449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90289 3..449 +
1692278194.4019132-CDS-M-pyrifera_M_contig90289:2..4491692278194.4019132-CDS-M-pyrifera_M_contig90289:2..449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90289 3..449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90289.20934.1prot_M-pyrifera_M_contig90289.20934.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90289 3..449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90289.20934.1

>prot_M-pyrifera_M_contig90289.20934.1 ID=prot_M-pyrifera_M_contig90289.20934.1|Name=mRNA_M-pyrifera_M_contig90289.20934.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
GDWDGDGTDTIGAYNPDTATFFLRNANSSGDADVAVFNYGIPGWVPLVGD
WNDDGTDTIGVYNPDTATFFLRNSNTTGDADVVPFNYGLANWTPLTGDWN
NDGSDTVGVQSPTTATFFLRNTNDSGNSDIAPFNYGLPGWVPLAGDWDG
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mRNA from alignment at M-pyrifera_M_contig90289:3..449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90289.20934.1 ID=mRNA_M-pyrifera_M_contig90289.20934.1|Name=mRNA_M-pyrifera_M_contig90289.20934.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig90289:3..449+ (Macrocystis pyrifera P11B4 male)
GGGGACTGGGACGGCGATGGGACCGATACCATTGGGGCCTATAACCCCGA
TACGGCCACCTTCTTCTTACGCAATGCCAACAGTTCGGGCGACGCCGACG
TGGCCGTGTTCAACTACGGCATCCCTGGTTGGGTTCCGCTGGTTGGCGAT
TGGAACGACGATGGGACCGACACCATCGGCGTCTACAACCCCGACACGGC
CACCTTCTTCTTGCGGAATTCCAATACCACGGGCGACGCTGATGTGGTGC
CCTTCAACTATGGGCTGGCCAATTGGACTCCGTTGACCGGAGACTGGAAC
AACGACGGGTCCGACACGGTTGGTGTCCAAAGCCCCACCACTGCCACGTT
CTTTTTGCGGAACACCAACGACTCGGGCAATTCGGATATCGCCCCCTTCA
ACTATGGTCTGCCAGGTTGGGTACCGTTGGCCGGAGACTGGGACGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90289:3..449+

>mRNA_M-pyrifera_M_contig90289.20934.1 ID=mRNA_M-pyrifera_M_contig90289.20934.1|Name=mRNA_M-pyrifera_M_contig90289.20934.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig90289:3..449+ (Macrocystis pyrifera P11B4 male)
GGGGACTGGGACGGCGATGGGACCGATACCATTGGGGCCTATAACCCCGA
TACGGCCACCTTCTTCTTACGCAATGCCAACAGTTCGGGCGACGCCGACG
TGGCCGTGTTCAACTACGGCATCCCTGGTTGGGTTCCGCTGGTTGGCGAT
TGGAACGACGATGGGACCGACACCATCGGCGTCTACAACCCCGACACGGC
CACCTTCTTCTTGCGGAATTCCAATACCACGGGCGACGCTGATGTGGTGC
CCTTCAACTATGGGCTGGCCAATTGGACTCCGTTGACCGGAGACTGGAAC
AACGACGGGTCCGACACGGTTGGTGTCCAAAGCCCCACCACTGCCACGTT
CTTTTTGCGGAACACCAACGACTCGGGCAATTCGGATATCGCCCCCTTCA
ACTATGGTCTGCCAGGTTGGGTACCGTTGGCCGGAGACTGGGACGGCGGG
GACTGGGACGGCGATGGGACCGATACCATTGGGGCCTATAACCCCGATAC
GGCCACCTTCTTCTTACGCAATGCCAACAGTTCGGGCGACGCCGACGTGG
CCGTGTTCAACTACGGCATCCCTGGTTGGGTTCCGCTGGTTGGCGATTGG
AACGACGATGGGACCGACACCATCGGCGTCTACAACCCCGACACGGCCAC
CTTCTTCTTGCGGAATTCCAATACCACGGGCGACGCTGATGTGGTGCCCT
TCAACTATGGGCTGGCCAATTGGACTCCGTTGACCGGAGACTGGAACAAC
GACGGGTCCGACACGGTTGGTGTCCAAAGCCCCACCACTGCCACGTTCTT
TTTGCGGAACACCAACGACTCGGGCAATTCGGATATCGCCCCCTTCAACT
ATGGTCTGCCAGGTTGGGTACCGTTGGCCGGAGACTGGGACGGC
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