mRNA_M-pyrifera_M_contig9025.20922.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9025.20922.1
Unique NamemRNA_M-pyrifera_M_contig9025.20922.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.390e-35
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:    1 FHLVMQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 207
            F  +  RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV +K+DERKQLGRIMLKGDTITLMQSV
Sbjct:   27 FRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKNDERKQLGRIMLKGDTITLMQSV 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A7L3LPY6_9CHAR (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L3LPY6_9CHAR)

HSP 1 Score: 108 bits (270), Expect = 1.970e-29
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 FHLVMQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 207
            F +++QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+H K+  RKQLGRIMLKGD ITL+QSV
Sbjct:   19 FSIILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A7L0K7W4_CHATO (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Anseriformes TaxID=8826 RepID=A0A7L0K7W4_CHATO)

HSP 1 Score: 108 bits (270), Expect = 2.090e-29
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 FHLVMQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 207
            F +++QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+H K+  RKQLGRIMLKGD ITL+QSV
Sbjct:   21 FFIILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 89
[Close]
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A7L1XYB1_9AVES (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Thinocorus orbignyianus TaxID=161742 RepID=A0A7L1XYB1_9AVES)

HSP 1 Score: 108 bits (270), Expect = 2.410e-29
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 FHLVMQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 207
            F +++QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+H K+  RKQLGRIMLKGD ITL+QSV
Sbjct:   26 FFIILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 94
[Close]
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A7K9VC07_ANSSE (Small nuclear ribonucleoprotein E (Fragment) n=9 Tax=Sauria TaxID=32561 RepID=A0A7K9VC07_ANSSE)

HSP 1 Score: 108 bits (270), Expect = 2.480e-29
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 FHLVMQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 207
            F +++QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+H K+  RKQLGRIMLKGD ITL+QSV
Sbjct:   27 FFIILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A7K9ER96_BARMA (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Baryphthengus martii TaxID=176943 RepID=A0A7K9ER96_BARMA)

HSP 1 Score: 107 bits (267), Expect = 4.760e-29
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 FHLVMQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 207
            F + +QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+H K+  RKQLGRIMLKGD ITL+QSV
Sbjct:   13 FSITLQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 81
[Close]
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A835YX06_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX06_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.300e-29
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 FHLVMQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 207
            F  +  RTRVQIWLYENT MRIEG+I GFDEYMNLVLDEAEEV LK + R Q+GRI+LKGDTITLMQ V
Sbjct:   29 FRFLQNRTRVQIWLYENTTMRIEGRISGFDEYMNLVLDEAEEVDLKKNVRTQVGRILLKGDTITLMQGV 97
[Close]
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A091R4D2_LEPDC (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A091R4D2_LEPDC)

HSP 1 Score: 106 bits (265), Expect = 7.900e-29
Identity = 48/67 (71.64%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    7 LVMQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 207
            +++QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+H K+  RKQLGRIMLKGD ITL+QSV
Sbjct:    8 IILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 74
[Close]
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: A0A7K9AW75_DRONO (Small nuclear ribonucleoprotein E (Fragment) n=2 Tax=Palaeognathae TaxID=8783 RepID=A0A7K9AW75_DRONO)

HSP 1 Score: 107 bits (266), Expect = 8.020e-29
Identity = 49/67 (73.13%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    7 LVMQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 207
            +V+QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+H K+  RKQLGRIMLKGD ITL+QSV
Sbjct:   21 IVLQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Match: UPI001CFEB29C (small nuclear ribonucleoprotein E-like n=1 Tax=Gracilinanus agilis TaxID=191870 RepID=UPI001CFEB29C)

HSP 1 Score: 106 bits (265), Expect = 9.610e-29
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 FHLVMQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLGRIMLKGDTITLMQSV 207
            F ++ QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+H K+  RKQLGRIMLKGD ITL+QSV
Sbjct:   13 FAILFQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 81
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9025.20922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD43_ECTSI1.390e-3588.41Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
A0A7L3LPY6_9CHAR1.970e-2971.01Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
A0A7L0K7W4_CHATO2.090e-2971.01Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
A0A7L1XYB1_9AVES2.410e-2971.01Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
A0A7K9VC07_ANSSE2.480e-2971.01Small nuclear ribonucleoprotein E (Fragment) n=9 T... [more]
A0A7K9ER96_BARMA4.760e-2971.01Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
A0A835YX06_9STRA5.300e-2976.81Small nuclear ribonucleoprotein E n=1 Tax=Tribonem... [more]
A0A091R4D2_LEPDC7.900e-2971.64Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
A0A7K9AW75_DRONO8.020e-2973.13Small nuclear ribonucleoprotein E (Fragment) n=2 T... [more]
UPI001CFEB29C9.610e-2971.01small nuclear ribonucleoprotein E-like n=1 Tax=Gra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9025contigM-pyrifera_M_contig9025:4560..5351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue2.6e-26
Seed eggNOG ortholog2880.D8LD43
Preferred nameSNRPE
KEGG koko:K11097,ko:K12272,ko:K18754
KEGG TC3.A.5.8
KEGG Pathwayko03040,ko03060,map03040,map03060
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005697,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0035770,GO:0036464,GO:0042303,GO:0042633,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045292,GO:0045495,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060293,GO:0065003,GO:0070013,GO:0070990,GO:0071004,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990904
EggNOG free text desc.spliceosomal snRNP assembly
EggNOG OGsCOG1958@1,KOG1774@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044,ko03019,ko03032,ko03041,ko04031
Exons2
Model size210
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9025.20922.1prot_M-pyrifera_M_contig9025.20922.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9025 4560..5339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.1298444-CDS-M-pyrifera_M_contig9025:4559..46431622816814.1298444-CDS-M-pyrifera_M_contig9025:4559..4643Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9025 4560..4643 -
1692278194.115138-CDS-M-pyrifera_M_contig9025:4559..46431692278194.115138-CDS-M-pyrifera_M_contig9025:4559..4643Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9025 4560..4643 -
1622816814.142535-CDS-M-pyrifera_M_contig9025:5225..53391622816814.142535-CDS-M-pyrifera_M_contig9025:5225..5339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9025 5226..5339 -
1692278194.1288574-CDS-M-pyrifera_M_contig9025:5225..53391692278194.1288574-CDS-M-pyrifera_M_contig9025:5225..5339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9025 5226..5339 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.156914-UTR-M-pyrifera_M_contig9025:5339..53511622816814.156914-UTR-M-pyrifera_M_contig9025:5339..5351Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9025 5340..5351 -
1692278194.1388772-UTR-M-pyrifera_M_contig9025:5339..53511692278194.1388772-UTR-M-pyrifera_M_contig9025:5339..5351Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9025 5340..5351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9025.20922.1

>prot_M-pyrifera_M_contig9025.20922.1 ID=prot_M-pyrifera_M_contig9025.20922.1|Name=mRNA_M-pyrifera_M_contig9025.20922.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
MQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVHLKSDERKQLG
RIMLKGDTITLMQSV*
back to top

mRNA from alignment at M-pyrifera_M_contig9025:4560..5351-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9025.20922.1 ID=mRNA_M-pyrifera_M_contig9025.20922.1|Name=mRNA_M-pyrifera_M_contig9025.20922.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig9025:4560..5351- (Macrocystis pyrifera P11B4 male)
TTTCATCTTGTGATGCAGCGAACGAGAGTACAGATCTGGCTGTACGAGAA
CACCAAGATGCGGATAGAAGGACAGATCCTGGGGTTCGACGAATACATGA
ACTTGGTCTTGGACGAAGCGGAAGAGGTACGGTTTTGTACGGTATATTTT
GGCGTTGCTGAGTCTGGTTTTGGTGTGGTATGGCATGGGTTGGCATGGTA
CTGTATGGTACCTGGTGCATGTTATGGTATGGTATGGTATGGTGTGGGTA
TGGTGTGGTTTGGTTTGATACGGTACGGTATCGTGTGGTATTGTATGGTA
CGGCGGTGTGATGTGGTGTGGCTTGGGGTGGTGTGTTTTGTTCGTATAGT
GTGGTATTGCATGGCGTGGGAAGGTGTGGTGTAATATGGTATGGTATGTT
GTGGTAGGCTGTCCTACTATGTTTGGTAGCACGGTACGGAATGGAATGGT
AGAGCATGTACGGTATGTATTGTTTGATCAGGTCTGGTCTGGTACGGTGT
GGTGTGGTATGGTACACGGCCGTAATTGTACTTGTCGTCAATTTGTGCGC
GGCGAGAGGATCTTGTTTAGGCTTTCGAAGCGATCTCGAAAGGGGTACAG
TGGCACAGGAGGGCCTTTTTTTTCACGCTATATAAATTAGAAGCCATTTT
CCAACTGCCTTTGTTACGGCGTGCATGCGTGTGTGTGTGTGTGTGTTTTT
TTTGTCAGGTACACTTGAAGAGCGATGAGCGCAAGCAGCTGGGACGCATC
ATGCTGAAGGGGGATACGATCACCCTCATGCAGAGCGTGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9025:4560..5351-

>mRNA_M-pyrifera_M_contig9025.20922.1 ID=mRNA_M-pyrifera_M_contig9025.20922.1|Name=mRNA_M-pyrifera_M_contig9025.20922.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig9025:4560..5351- (Macrocystis pyrifera P11B4 male)
ATGCAGCGAACGAGAGTACAGATCTGGCTGTACGAGAACACCAAGATGCG
GATAGAAGGACAGATCCTGGGGTTCGACGAATACATGAACTTGGTCTTGG
ACGAAGCGGAAGAGATGCAGCGAACGAGAGTACAGATCTGGCTGTACGAG
AACACCAAGATGCGGATAGAAGGACAGATCCTGGGGTTCGACGAATACAT
GAACTTGGTCTTGGACGAAGCGGAAGAGGTACACTTGAAGAGCGATGAGC
GCAAGCAGCTGGGACGCATCATGCTGAAGGGGGATACGATCACCCTCATG
CAGAGCGTGTGAGTACACTTGAAGAGCGATGAGCGCAAGCAGCTGGGACG
CATCATGCTGAAGGGGGATACGATCACCCTCATGCAGAGCGTGTGA
back to top