mRNA_M-pyrifera_M_contig90204.20914.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90204.20914.1
Unique NamemRNA_M-pyrifera_M_contig90204.20914.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90204.20914.1 vs. uniprot
Match: A0A2E7KKB4_9PLAN (Uncharacterized protein n=9 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KKB4_9PLAN)

HSP 1 Score: 176 bits (446), Expect = 2.720e-54
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1
Query:    1 ETGEEPVSAPKVVALASAPTNDITEVNDTVTHDPNLVEYDHVEMTKEEKIDKAKRALKNFKYDLSQNTASLVARRNLTEAIELLKRDLKRLEAEP 285
            ETGEEP SAPKVVALASAPTNDITEVNDTVTHDPNLVEYDHVEMTKEEKI+KAKRALKNFKYDLSQNTASLVARRNLTEAIELLKRDLKRLEAEP
Sbjct:  106 ETGEEPASAPKVVALASAPTNDITEVNDTVTHDPNLVEYDHVEMTKEEKIEKAKRALKNFKYDLSQNTASLVARRNLTEAIELLKRDLKRLEAEP 200          
BLAST of mRNA_M-pyrifera_M_contig90204.20914.1 vs. uniprot
Match: UPI001D156DBF (hypothetical protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=UPI001D156DBF)

HSP 1 Score: 166 bits (420), Expect = 6.030e-51
Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 1
Query:    1 ETGEEPVSAPKVVALASAPTNDITEVNDTVTHDPNLVEYDHVEMTKEEKIDKAKRALKNFKYDLSQNTASLVARRNLTEAIELLKRDLKRLEAEP 285
            ETGEEPVSAPKVVALASAPT DITEVNDTV HDP LVEYDHVEMTKEEKI+KAKRALKNFKYDLSQNTASLVARRNL EAIELLK+DLKRLEA+P
Sbjct:   61 ETGEEPVSAPKVVALASAPTQDITEVNDTVPHDPTLVEYDHVEMTKEEKIEKAKRALKNFKYDLSQNTASLVARRNLAEAIELLKQDLKRLEAQP 155          
BLAST of mRNA_M-pyrifera_M_contig90204.20914.1 vs. uniprot
Match: A0A517QEB0_9PLAN (Putative major pilin subunit n=4 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QEB0_9PLAN)

HSP 1 Score: 112 bits (279), Expect = 4.950e-29
Identity = 60/87 (68.97%), Postives = 71/87 (81.61%), Query Frame = 1
Query:   25 APKVVALASAPTNDITEVNDTVTHDPNLVEYDHVEMTKEEKIDKAKRALKNFKYDLSQNTASLVARRNLTEAIELLKRDLKRLEAEP 285
            A   VAL SAP+ D    +D V+ DP+LV+++ +E+TK EKI K K+ALKNFKYDLSQNTASLVARRNL EAIELLK+DLKRLEAEP
Sbjct:  111 AENTVALTSAPSEDAAVADDPVSSDPSLVDFEPIELTKAEKIAKTKKALKNFKYDLSQNTASLVARRNLAEAIELLKQDLKRLEAEP 197          
BLAST of mRNA_M-pyrifera_M_contig90204.20914.1 vs. uniprot
Match: A0A517VQQ2_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VQQ2_9PLAN)

HSP 1 Score: 79.0 bits (193), Expect = 2.580e-16
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 1
Query:  112 EYDHVEMTKEEKIDKAKRALKNFKYDLSQNTASLVARRNLTEAIELLKRDLKRLEAEP 285
            E ++  ++KEE+I +AKRA+KNFKYDLSQNTASLVARRNL EAIE L  DLKRLE+EP
Sbjct:  121 EIENSNLSKEEQIKRAKRAMKNFKYDLSQNTASLVARRNLMEAIESLTEDLKRLESEP 178          
BLAST of mRNA_M-pyrifera_M_contig90204.20914.1 vs. uniprot
Match: A0A517RMN2_9PLAN (Putative major pilin subunit n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RMN2_9PLAN)

HSP 1 Score: 78.2 bits (191), Expect = 6.990e-16
Identity = 48/82 (58.54%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   40 ALASAPTNDITEVNDTVTHDPNLVEYDHVEMTKEEKIDKAKRALKNFKYDLSQNTASLVARRNLTEAIELLKRDLKRLEAEP 285
            A  SAP + +  V D V    +L      E+TK EKI K KRALKNFK DLSQN ASLVARRN+ EAI+LL++DLKRL++EP
Sbjct:  113 AFTSAPVDGVA-VEDPVWQAEDLAVEGVPELTKAEKIRKTKRALKNFKLDLSQNKASLVARRNVVEAIKLLEQDLKRLQSEP 193          
BLAST of mRNA_M-pyrifera_M_contig90204.20914.1 vs. uniprot
Match: A0A2E2C433_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C433_9PLAN)

HSP 1 Score: 76.3 bits (186), Expect = 4.500e-15
Identity = 44/82 (53.66%), Postives = 61/82 (74.39%), Query Frame = 1
Query:   37 VALASAPTNDITEVNDTVTHDPNLVEYDHVEMTKEEKIDKAKRALKNFKYDLSQNTASLVARRNLTEAIELLKRDLKRLEAE 282
            +AL  A T + T+   T +      E+   E++K+EKI+K +RALKNFK+DL+QNTASLVARRNL++AIE L+ DLKRLE++
Sbjct:  120 IALKPAETTE-TKTRFTPSWQRRNTEFGDQELSKKEKIEKTRRALKNFKFDLTQNTASLVARRNLSDAIEQLQNDLKRLESQ 200          
BLAST of mRNA_M-pyrifera_M_contig90204.20914.1 vs. uniprot
Match: A0A2D5GVF9_9PLAN (Uncharacterized protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5GVF9_9PLAN)

HSP 1 Score: 73.2 bits (178), Expect = 6.500e-14
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1
Query:  127 EMTKEEKIDKAKRALKNFKYDLSQNTASLVARRNLTEAIELLKRDLKRLEAE 282
            E++++EKI K KRALKNFK+DLSQNTASLVARRNL EAIE LK DLK+LE++
Sbjct:  146 EISRKEKIAKTKRALKNFKFDLSQNTASLVARRNLVEAIEELKHDLKQLESQ 197          
BLAST of mRNA_M-pyrifera_M_contig90204.20914.1 vs. uniprot
Match: A0A517VL38_9PLAN (Putative major pilin subunit n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VL38_9PLAN)

HSP 1 Score: 72.4 bits (176), Expect = 1.330e-13
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   37 VALASAPTNDITEVNDTVTHDPNLVEYDHVEMTKEEKIDKAKRALKNFKYDLSQNTASLVARRNLTEAIELLKRDLKRLEAE 282
            +AL SA T +     D V H  +  ++ + ++++E KI   KRALKNFK+DL+Q+TASLVARRNL +AIE L+ DLKRLE++
Sbjct:  119 IALKSAETEETNTRRDPVGHTRHT-DFKNQKLSRETKIANTKRALKNFKFDLTQDTASLVARRNLVDAIEQLQNDLKRLESQ 199          
BLAST of mRNA_M-pyrifera_M_contig90204.20914.1 vs. uniprot
Match: A0A518IJK1_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IJK1_9PLAN)

HSP 1 Score: 67.8 bits (164), Expect = 6.930e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1
Query:  127 EMTKEEKIDKAKRALKNFKYDLSQNTASLVARRNLTEAIELLKRDLKRLEA 279
            E++  EKI K KRALKNFK DLSQN ASLVARRN+ EAI+LL++DLKRL+A
Sbjct:  141 ELSTAEKIRKTKRALKNFKLDLSQNKASLVARRNVAEAIKLLEQDLKRLQA 191          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90204.20914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2E7KKB4_9PLAN2.720e-5497.89Uncharacterized protein n=9 Tax=Gimesia TaxID=1649... [more]
UPI001D156DBF6.030e-5192.63hypothetical protein n=1 Tax=Gimesia benthica TaxI... [more]
A0A517QEB0_9PLAN4.950e-2968.97Putative major pilin subunit n=4 Tax=Gimesia panar... [more]
A0A517VQQ2_9PLAN2.580e-1672.41Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A517RMN2_9PLAN6.990e-1658.54Putative major pilin subunit n=1 Tax=Gimesia alba ... [more]
A0A2E2C433_9PLAN4.500e-1553.66Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A2D5GVF9_9PLAN6.500e-1475.00Uncharacterized protein n=6 Tax=Planctomycetaceae ... [more]
A0A517VL38_9PLAN1.330e-1351.22Putative major pilin subunit n=1 Tax=Gimesia algae... [more]
A0A518IJK1_9PLAN6.930e-1272.55Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90204contigM-pyrifera_M_contig90204:507..794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.7519774-CDS-M-pyrifera_M_contig90204:506..7941622816813.7519774-CDS-M-pyrifera_M_contig90204:506..794Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90204 507..794 -
1692278193.882602-CDS-M-pyrifera_M_contig90204:506..7941692278193.882602-CDS-M-pyrifera_M_contig90204:506..794Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90204 507..794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90204.20914.1prot_M-pyrifera_M_contig90204.20914.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90204 507..794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90204.20914.1

>prot_M-pyrifera_M_contig90204.20914.1 ID=prot_M-pyrifera_M_contig90204.20914.1|Name=mRNA_M-pyrifera_M_contig90204.20914.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
ETGEEPVSAPKVVALASAPTNDITEVNDTVTHDPNLVEYDHVEMTKEEKI
DKAKRALKNFKYDLSQNTASLVARRNLTEAIELLKRDLKRLEAEP*
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mRNA from alignment at M-pyrifera_M_contig90204:507..794-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90204.20914.1 ID=mRNA_M-pyrifera_M_contig90204.20914.1|Name=mRNA_M-pyrifera_M_contig90204.20914.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig90204:507..794- (Macrocystis pyrifera P11B4 male)
GAAACAGGTGAAGAACCCGTTTCTGCCCCGAAAGTAGTTGCCCTGGCATC TGCTCCCACCAATGACATCACTGAAGTCAATGACACTGTGACACATGACC CTAATCTGGTCGAATACGATCACGTAGAGATGACCAAAGAAGAAAAGATA GACAAAGCTAAACGAGCTTTAAAGAACTTTAAATATGATCTGTCTCAGAA TACCGCCTCACTGGTTGCACGCCGGAATTTGACTGAAGCGATCGAATTGC TGAAGCGGGATCTGAAACGCCTGGAAGCAGAACCGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90204:507..794-

>mRNA_M-pyrifera_M_contig90204.20914.1 ID=mRNA_M-pyrifera_M_contig90204.20914.1|Name=mRNA_M-pyrifera_M_contig90204.20914.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig90204:507..794- (Macrocystis pyrifera P11B4 male)
GAAACAGGTGAAGAACCCGTTTCTGCCCCGAAAGTAGTTGCCCTGGCATC
TGCTCCCACCAATGACATCACTGAAGTCAATGACACTGTGACACATGACC
CTAATCTGGTCGAATACGATCACGTAGAGATGACCAAAGAAGAAAAGATA
GACAAAGCTAAACGAGCTTTAAAGAACTTTAAATATGATCTGTCTCAGAA
TACCGCCTCACTGGTTGCACGCCGGAATTTGACTGAAGCGATCGAATTGC
TGAAGCGGGATCTGAAACGCCTGGAAGCAGAACCGTAAGAAACAGGTGAA
GAACCCGTTTCTGCCCCGAAAGTAGTTGCCCTGGCATCTGCTCCCACCAA
TGACATCACTGAAGTCAATGACACTGTGACACATGACCCTAATCTGGTCG
AATACGATCACGTAGAGATGACCAAAGAAGAAAAGATAGACAAAGCTAAA
CGAGCTTTAAAGAACTTTAAATATGATCTGTCTCAGAATACCGCCTCACT
GGTTGCACGCCGGAATTTGACTGAAGCGATCGAATTGCTGAAGCGGGATC
TGAAACGCCTGGAAGCAGAACCGTAA
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