mRNA_M-pyrifera_M_contig90183.20902.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90183.20902.1
Unique NamemRNA_M-pyrifera_M_contig90183.20902.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90183.20902.1 vs. uniprot
Match: A0A7S4I848_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I848_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 1.980e-27
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 GFTRHLLTYWLVPSFLGQVLLVILFDFIPHWNLEATPAENRYQTTAMLQTYSFLQPFLSVLLQYQDYHLIHHLYPQIPFYRYSNKWREKKEYLVEQKQVKINRLKVDLDGLRL 339
            G+   +  YWL+P      +LV  FDF+PH+  +  P ENRY TT+ ++TY  LQP LS++L YQ+YHL HHLYP IPFYRY  KW  ++E L + K  K   LK+ +   R+
Sbjct:  222 GYFYQVYYYWLLPCVFCHTMLVFAFDFLPHFQHDTRPTENRYNTTSNIETYRVLQPLLSIILHYQNYHLSHHLYPSIPFYRYKGKWNARREEL-KAKNAKTLILKLPISKPRM 333          
BLAST of mRNA_M-pyrifera_M_contig90183.20902.1 vs. uniprot
Match: A0A382K9Y8_9ZZZZ (FA_desaturase domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382K9Y8_9ZZZZ)

HSP 1 Score: 82.0 bits (201), Expect = 9.860e-17
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    1 GFTRHLLTYWLVPSFLGQVLLVILFDFIPHWNLEATPAENRYQTTAMLQTYSFLQPFLSVLLQYQDYHLIHHLYPQIPFYRYSNKWREKKEYLVEQ 288
            G+   +L  W++PS +G  L+ ++F F+PH+    T  EN YQ T +   + +L   LSV   YQ+YHLIHHLYP +PFY Y N W  + + L  Q
Sbjct:  123 GYGMEVLFLWILPSRIGLALVALVFVFLPHYPSNITAEENEYQATTIRLGWEWLLTPLSV---YQNYHLIHHLYPTLPFYNYINVWHLRYDELTSQ 215          
BLAST of mRNA_M-pyrifera_M_contig90183.20902.1 vs. uniprot
Match: F6ELS3_HOYSD (Electron transfer protein FdxB n=3 Tax=Hoyosella TaxID=697025 RepID=F6ELS3_HOYSD)

HSP 1 Score: 84.3 bits (207), Expect = 1.130e-16
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 GFTRHLLTYWLVPSFLGQVLLVILFDFIPHWNLEATPAENRYQTTAMLQTYSFLQPFLSVLLQYQDYHLIHHLYPQIPFYRYSNKWREKKEYLVEQ 288
            G   +LL  +L+P  +G  +L   FD++PH  L AT AENR+  T +   + +L   L+ L+ YQ+YHL+HHL+P IPFYRY + WR  ++  +EQ
Sbjct:  220 GLGWYLLVIYLIPQRIGLTVLAWWFDWLPHHGLAATAAENRFHATRVRVGWEWL---LTPLMLYQNYHLVHHLHPAIPFYRYVSAWRNNEQAYLEQ 312          
BLAST of mRNA_M-pyrifera_M_contig90183.20902.1 vs. uniprot
Match: A0A2H0DM10_9BACT (Delta(12)-fatty acid dehydrogenase n=1 Tax=Elusimicrobia bacterium CG22_combo_CG10-13_8_21_14_all_63_91 TaxID=2014312 RepID=A0A2H0DM10_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 1.150e-16
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    4 FTRHLLTYWLVPSFLGQVLLVILFDFIPHWNLEATPAENRYQTTAMLQTYSFLQPFLSVLLQYQDYHLIHHLYPQIPFYRYSNKWREKKEYLVEQ 288
            FT  +L YW+VP+ L   LL   FD++PH        E+RY+ + ++      +P L+ L  +Q+YHLIHHL+P +PFY Y+  WR +KE+L+ +
Sbjct:  165 FTPGVLFYWIVPAKLASALLAFSFDYLPHRPHSVPAREDRYRASHVID-----EPLLTPLFLFQNYHLIHHLHPGVPFYGYTALWRRQKEFLLSR 254          
BLAST of mRNA_M-pyrifera_M_contig90183.20902.1 vs. uniprot
Match: A0A7C7SD90_9GAMM (FA_desaturase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C7SD90_9GAMM)

HSP 1 Score: 79.7 bits (195), Expect = 1.660e-16
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 GFTRHLLTYWLVPSFLGQVLLVILFDFIPHWNLEATPAENRYQTTAMLQTYSFLQPFLSVLLQYQDYHLIHHLYPQIPFYRYSNKWREKKEYLVEQ 288
            G+   +L  WL+ S     L+ ++F ++PH+  + T  EN YQ T + Q + FL   L+ L  YQ+YHLIHHLYP  PFY Y   WR K E L  Q
Sbjct:   49 GYGMEVLFLWLLASRFALFLVALVFVYLPHYPAKVTAQENEYQATTISQGWEFL---LTPLFVYQNYHLIHHLYPTAPFYNYIKIWRLKYEELNAQ 141          
BLAST of mRNA_M-pyrifera_M_contig90183.20902.1 vs. uniprot
Match: A0A7S4P6I3_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4P6I3_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 2.400e-16
Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    1 GFTRHLLTYWLVPSFLGQVLLVILFDFIPHWNLEATPAENRYQTTAMLQTYSFLQPFLSVLLQYQDYHLIHHLYPQIPFYRYSNKWREKKEYLVEQKQVKINRL 312
            G+    L  W++PS      L   FD++PH        ++RY TTA++ ++  L P  + LL YQ+YH++HHLYP IPF RY   +  KK+ L ++K++ + RL
Sbjct:  191 GYFHEALVCWVIPSRFAIFTLAATFDYLPHSPHVVPITQSRYHTTALMVSHKMLTPLFTCLLLYQNYHIMHHLYPTIPFPRYKRAYECKKQEL-DEKKIPVRRL 293          
BLAST of mRNA_M-pyrifera_M_contig90183.20902.1 vs. uniprot
Match: S4Y2Z1_SORCE (FA_desaturase domain-containing protein n=5 Tax=Sorangium cellulosum TaxID=56 RepID=S4Y2Z1_SORCE)

HSP 1 Score: 82.0 bits (201), Expect = 2.600e-16
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    1 GFTRHLLTYWLVPSFLGQVLLVILFDFIPHWNLEATPAENRYQTTAMLQTYSFLQPFLSVLLQYQDYHLIHHLYPQIPFYRYSNKWREKKEYLVEQKQVKINRLKVDL 324
            G+    L YW+VP+ L    L   FD++PH+  E T  +NRY+ T  + +  F     +VLL  Q YHLIHHLYP +PF+RY   W+ ++E L++ +   +  L+  L
Sbjct:  172 GYGELALLYWIVPARLAIFFLAFAFDYLPHYPHEITAGQNRYRATRAIDSALF-----NVLLFGQTYHLIHHLYPAVPFFRYRTVWKYQREELMKLQSENLAPLRAPL 274          
BLAST of mRNA_M-pyrifera_M_contig90183.20902.1 vs. uniprot
Match: A0A2D8J4K7_9ALTE (FA_desaturase domain-containing protein n=1 Tax=Alteromonadaceae bacterium TaxID=1916082 RepID=A0A2D8J4K7_9ALTE)

HSP 1 Score: 80.9 bits (198), Expect = 4.380e-16
Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 1
Query:    1 GFTRHLLTYWLVPSFLGQVLLVILFDFIPHWNLEATPAENRYQTTAMLQTYSFLQPFLSVLLQYQDYHLIHHLYPQIPFYRYSNKWREKKEYLVEQKQVKINRLKVDLDGLRL 339
            G+ + +L YWL+P  +  V L + FD++PH    AT  +N +Q T     Y +L   L+ +L +Q+YHL+HHLYP++PFYRY   WR   +  +  +      L VD+ G R+
Sbjct:  162 GWGQEVLLYWLLPGRIALVFLALAFDYLPHHPRLATQQQNPWQATNNRVGYEWL---LTPVLMWQNYHLVHHLYPRVPFYRYLRVWRAGSDLFMPNQP-----LLVDIFGRRI 266          
BLAST of mRNA_M-pyrifera_M_contig90183.20902.1 vs. uniprot
Match: A9FXA0_SORC5 (Delta(12)-fatty acid dehydrogenase n=2 Tax=Sorangium cellulosum TaxID=56 RepID=A9FXA0_SORC5)

HSP 1 Score: 80.9 bits (198), Expect = 1.190e-15
Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 1
Query:    1 GFTRHLLTYWLVPSFLGQVLLVILFDFIPHWNLEATPAENRYQTTAMLQTYSFLQPFLSVLLQYQDYHLIHHLYPQIPFYRYSNKWREKKEYLVEQKQVKI 303
            G+    L YW++P+ L    L   FD++PH+  E T  +NRY  T  + +  F     +VLL  Q YHLIHHLYP +PF+RY   W+ ++E L++ +   I
Sbjct:  236 GYGELALLYWILPARLAIFFLAFAFDYLPHYPHEITATQNRYSATRAVDSALF-----NVLLFGQTYHLIHHLYPAVPFFRYRTVWKHQREELMKLRSESI 331          
BLAST of mRNA_M-pyrifera_M_contig90183.20902.1 vs. uniprot
Match: UPI0011CBB592 (fatty acid desaturase n=1 Tax=Vogesella mureinivorans TaxID=657276 RepID=UPI0011CBB592)

HSP 1 Score: 80.1 bits (196), Expect = 1.270e-15
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 GFTRHLLTYWLVPSFLGQVLLVILFDFIPHWNLEATPAENRYQTTAMLQTYSFLQPFLSVLLQYQDYHLIHHLYPQIPFYRYSNKWREKKEY 276
            GF   +L YW +P  +  V+LV+ F  +PH   E T  +++Y+ T +   Y +L   LS LL  Q+YHL+HHLYP +PFYRY   WR K+ +
Sbjct:  186 GFGWEVLLYWFLPGRIAIVMLVLTFSVLPHVPHEVTQKDDKYRATNVRVGYEWL---LSPLLLNQNYHLVHHLYPTVPFYRYLAVWRAKERF 274          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90183.20902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4I848_9EUKA1.980e-2746.02Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A382K9Y8_9ZZZZ9.860e-1741.67FA_desaturase domain-containing protein (Fragment)... [more]
F6ELS3_HOYSD1.130e-1642.71Electron transfer protein FdxB n=3 Tax=Hoyosella T... [more]
A0A2H0DM10_9BACT1.150e-1640.00Delta(12)-fatty acid dehydrogenase n=1 Tax=Elusimi... [more]
A0A7C7SD90_9GAMM1.660e-1642.71FA_desaturase domain-containing protein n=1 Tax=Ga... [more]
A0A7S4P6I3_9EUKA2.400e-1637.50Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
S4Y2Z1_SORCE2.600e-1637.96FA_desaturase domain-containing protein n=5 Tax=So... [more]
A0A2D8J4K7_9ALTE4.380e-1637.17FA_desaturase domain-containing protein n=1 Tax=Al... [more]
A9FXA0_SORC51.190e-1538.61Delta(12)-fatty acid dehydrogenase n=2 Tax=Sorangi... [more]
UPI0011CBB5921.270e-1542.39fatty acid desaturase n=1 Tax=Vogesella mureinivor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90183contigM-pyrifera_M_contig90183:441..782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score84.0
Seed ortholog evalue5.1e-14
Seed eggNOG ortholog443218.AS9A_3076
Preferred namepaaE
KEGG rclassRC00098,RC02690,RC02691
KEGG koko:K00529,ko:K02613,ko:K15983
KEGG ReactionR02000,R06782,R06783,R09838,R09860
KEGG Pathwayko00071,ko00360,ko00984,ko01100,ko01120,ko01220,map00071,map00360,map00984,map01100,map01120,map01220
KEGG ModuleM00545
Hectar predicted targeting categorysignal peptide
GOsGO:0000166,GO:0003674,GO:0005488,GO:0006082,GO:0006725,GO:0006805,GO:0008150,GO:0008152,GO:0009056,GO:0009404,GO:0009407,GO:0009410,GO:0009636,GO:0009850,GO:0009852,GO:0009987,GO:0010124,GO:0010817,GO:0016054,GO:0019439,GO:0019748,GO:0019752,GO:0032787,GO:0036094,GO:0042178,GO:0042221,GO:0042445,GO:0042447,GO:0042537,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0051536,GO:0051537,GO:0051540,GO:0051716,GO:0065007,GO:0065008,GO:0070887,GO:0071466,GO:0071704,GO:0072329,GO:0097159,GO:0098754,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575
EggNOG free text desc.Oxidoreductase FAD-binding domain
EggNOG OGs235X3@1762,2GKGS@201174,COG1018@1,COG1018@2,COG3239@1,COG3239@2
EC1.14.13.142,1.18.1.3
COG Functional cat.C
BiGG ReactioniEcHS_1320.EcHS_A1479
Best tax levelMycobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEbr01602,ko00000,ko00001,ko00002,ko01000
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.0336752-CDS-M-pyrifera_M_contig90183:440..7821622816813.0336752-CDS-M-pyrifera_M_contig90183:440..782Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90183 441..782 -
1692278193.4350057-CDS-M-pyrifera_M_contig90183:440..7821692278193.4350057-CDS-M-pyrifera_M_contig90183:440..782Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90183 441..782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90183.20902.1prot_M-pyrifera_M_contig90183.20902.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90183 441..782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90183.20902.1

>prot_M-pyrifera_M_contig90183.20902.1 ID=prot_M-pyrifera_M_contig90183.20902.1|Name=mRNA_M-pyrifera_M_contig90183.20902.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
GFTRHLLTYWLVPSFLGQVLLVILFDFIPHWNLEATPAENRYQTTAMLQT
YSFLQPFLSVLLQYQDYHLIHHLYPQIPFYRYSNKWREKKEYLVEQKQVK
INRLKVDLDGLRL*
back to top

mRNA from alignment at M-pyrifera_M_contig90183:441..782-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90183.20902.1 ID=mRNA_M-pyrifera_M_contig90183.20902.1|Name=mRNA_M-pyrifera_M_contig90183.20902.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig90183:441..782- (Macrocystis pyrifera P11B4 male)
GGCTTCACTCGCCATCTCTTGACCTACTGGCTCGTGCCGTCGTTCCTTGG CCAAGTGCTCCTCGTCATCCTCTTCGACTTCATTCCCCATTGGAACCTCG AGGCAACGCCAGCCGAGAACCGATACCAGACCACAGCCATGCTACAGACG TACTCATTTCTCCAGCCATTCCTCTCTGTGCTCTTGCAGTATCAAGACTA CCACCTCATTCACCACCTCTACCCCCAGATTCCCTTCTACCGCTATTCCA ACAAGTGGCGTGAGAAGAAGGAGTATCTGGTGGAGCAGAAGCAAGTGAAG ATCAACCGCCTCAAGGTCGACCTCGATGGCCTCCGCCTGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90183:441..782-

>mRNA_M-pyrifera_M_contig90183.20902.1 ID=mRNA_M-pyrifera_M_contig90183.20902.1|Name=mRNA_M-pyrifera_M_contig90183.20902.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig90183:441..782- (Macrocystis pyrifera P11B4 male)
GGCTTCACTCGCCATCTCTTGACCTACTGGCTCGTGCCGTCGTTCCTTGG
CCAAGTGCTCCTCGTCATCCTCTTCGACTTCATTCCCCATTGGAACCTCG
AGGCAACGCCAGCCGAGAACCGATACCAGACCACAGCCATGCTACAGACG
TACTCATTTCTCCAGCCATTCCTCTCTGTGCTCTTGCAGTATCAAGACTA
CCACCTCATTCACCACCTCTACCCCCAGATTCCCTTCTACCGCTATTCCA
ACAAGTGGCGTGAGAAGAAGGAGTATCTGGTGGAGCAGAAGCAAGTGAAG
ATCAACCGCCTCAAGGTCGACCTCGATGGCCTCCGCCTGTAAGGCTTCAC
TCGCCATCTCTTGACCTACTGGCTCGTGCCGTCGTTCCTTGGCCAAGTGC
TCCTCGTCATCCTCTTCGACTTCATTCCCCATTGGAACCTCGAGGCAACG
CCAGCCGAGAACCGATACCAGACCACAGCCATGCTACAGACGTACTCATT
TCTCCAGCCATTCCTCTCTGTGCTCTTGCAGTATCAAGACTACCACCTCA
TTCACCACCTCTACCCCCAGATTCCCTTCTACCGCTATTCCAACAAGTGG
CGTGAGAAGAAGGAGTATCTGGTGGAGCAGAAGCAAGTGAAGATCAACCG
CCTCAAGGTCGACCTCGATGGCCTCCGCCTGTAA
back to top