mRNA_M-pyrifera_M_contig100944.209.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100944.209.1
Unique NamemRNA_M-pyrifera_M_contig100944.209.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100944.209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100944contigM-pyrifera_M_contig100944:41..643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size603
Cds size573
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.0380096-UTR-M-pyrifera_M_contig100944:40..701622815507.0380096-UTR-M-pyrifera_M_contig100944:40..70Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100944 41..70 +
1692277442.4681633-UTR-M-pyrifera_M_contig100944:40..701692277442.4681633-UTR-M-pyrifera_M_contig100944:40..70Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig100944 41..70 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815507.0490632-CDS-M-pyrifera_M_contig100944:70..6431622815507.0490632-CDS-M-pyrifera_M_contig100944:70..643Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100944 71..643 +
1692277442.4779367-CDS-M-pyrifera_M_contig100944:70..6431692277442.4779367-CDS-M-pyrifera_M_contig100944:70..643Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100944 71..643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100944.209.1prot_M-pyrifera_M_contig100944.209.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100944 71..643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100944.209.1

>prot_M-pyrifera_M_contig100944.209.1 ID=prot_M-pyrifera_M_contig100944.209.1|Name=mRNA_M-pyrifera_M_contig100944.209.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=191bp
MDDGTLKDFCAQGLSSNWQDPPSGKKFVSIIGTSSHPSYGGFAALDEDGS
VATWGHVLVAVANTPSSIKEKLSEGVKYLLATSGFLGAVMEDGSCIVWGP
DGGGTVHVLNDGTIGTHLTHDVAHLVGSASGFAALRHDGAVVSWGQLSNK
VIDFNATELYATKYVFFAINETRHFKCWAIVGSTQCSHLPN
back to top

mRNA from alignment at M-pyrifera_M_contig100944:41..643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100944.209.1 ID=mRNA_M-pyrifera_M_contig100944.209.1|Name=mRNA_M-pyrifera_M_contig100944.209.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=603bp|location=Sequence derived from alignment at M-pyrifera_M_contig100944:41..643+ (Macrocystis pyrifera P11B4 male)
GTTTCGTCTGGACCCTTTTTTTCGGCTGTCATGGATGACGGAACCCTCAA
GGACTTCTGTGCACAAGGACTAAGTTCTAATTGGCAGGATCCTCCATCAG
GAAAGAAGTTTGTTTCAATCATTGGAACGTCATCTCACCCATCATATGGT
GGCTTCGCAGCACTTGATGAAGATGGAAGCGTAGCGACGTGGGGACACGT
TCTTGTTGCAGTGGCGAATACACCCTCTTCGATCAAGGAGAAGCTCAGCG
AGGGAGTCAAGTATTTGCTAGCCACTAGTGGATTCCTCGGTGCAGTTATG
GAAGATGGAAGTTGTATTGTGTGGGGTCCAGACGGTGGCGGAACAGTACA
TGTACTTAACGATGGTACGATCGGAACTCATCTCACGCACGATGTTGCTC
ATTTGGTTGGATCTGCGAGTGGTTTTGCTGCTCTGAGACATGATGGAGCA
GTTGTTTCTTGGGGGCAACTTTCCAATAAGGTGATCGACTTCAATGCGAC
TGAATTATATGCGACAAAGTACGTCTTCTTTGCTATCAATGAGACAAGGC
ACTTCAAGTGTTGGGCAATTGTCGGGAGCACGCAGTGCTCACACTTGCCT
AAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100944:41..643+

>mRNA_M-pyrifera_M_contig100944.209.1 ID=mRNA_M-pyrifera_M_contig100944.209.1|Name=mRNA_M-pyrifera_M_contig100944.209.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1146bp|location=Sequence derived from alignment at M-pyrifera_M_contig100944:41..643+ (Macrocystis pyrifera P11B4 male)
ATGGATGACGGAACCCTCAAGGACTTCTGTGCACAAGGACTAAGTTCTAA
TTGGCAGGATCCTCCATCAGGAAAGAAGTTTGTTTCAATCATTGGAACGT
CATCTCACCCATCATATGGTGGCTTCGCAGCACTTGATGAAGATGGAAGC
GTAGCGACGTGGGGACACGTTCTTGTTGCAGTGGCGAATACACCCTCTTC
GATCAAGGAGAAGCTCAGCGAGGGAGTCAAGTATTTGCTAGCCACTAGTG
GATTCCTCGGTGCAGTTATGGAAGATGGAAGTTGTATTGTGTGGGGTCCA
GACGGTGGCGGAACAGTACATGTACTTAACGATGGTACGATCGGAACTCA
TCTCACGCACGATGTTGCTCATTTGGTTGGATCTGCGAGTGGTTTTGCTG
CTCTGAGACATGATGGAGCAGTTGTTTCTTGGGGGCAACTTTCCAATAAG
GTGATCGACTTCAATGCGACTGAATTATATGCGACAAAGTACGTCTTCTT
TGCTATCAATGAGACAAGGCACTTCAAGTGTTGGGCAATTGTCGGGAGCA
CGCAGTGCTCACACTTGCCTAACATGGATGACGGAACCCTCAAGGACTTC
TGTGCACAAGGACTAAGTTCTAATTGGCAGGATCCTCCATCAGGAAAGAA
GTTTGTTTCAATCATTGGAACGTCATCTCACCCATCATATGGTGGCTTCG
CAGCACTTGATGAAGATGGAAGCGTAGCGACGTGGGGACACGTTCTTGTT
GCAGTGGCGAATACACCCTCTTCGATCAAGGAGAAGCTCAGCGAGGGAGT
CAAGTATTTGCTAGCCACTAGTGGATTCCTCGGTGCAGTTATGGAAGATG
GAAGTTGTATTGTGTGGGGTCCAGACGGTGGCGGAACAGTACATGTACTT
AACGATGGTACGATCGGAACTCATCTCACGCACGATGTTGCTCATTTGGT
TGGATCTGCGAGTGGTTTTGCTGCTCTGAGACATGATGGAGCAGTTGTTT
CTTGGGGGCAACTTTCCAATAAGGTGATCGACTTCAATGCGACTGAATTA
TATGCGACAAAGTACGTCTTCTTTGCTATCAATGAGACAAGGCACTTCAA
GTGTTGGGCAATTGTCGGGAGCACGCAGTGCTCACACTTGCCTAAC
back to top