mRNA_M-pyrifera_M_contig90180.20900.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90180.20900.1
Unique NamemRNA_M-pyrifera_M_contig90180.20900.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90180.20900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90180contigM-pyrifera_M_contig90180:40..772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size665
Cds size663
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.9503129-CDS-M-pyrifera_M_contig90180:39..3111622816812.9503129-CDS-M-pyrifera_M_contig90180:39..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90180 40..311 +
1692278193.4027312-CDS-M-pyrifera_M_contig90180:39..3111692278193.4027312-CDS-M-pyrifera_M_contig90180:39..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90180 40..311 +
1622816812.962205-CDS-M-pyrifera_M_contig90180:381..7721622816812.962205-CDS-M-pyrifera_M_contig90180:381..772Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90180 382..772 +
1692278193.4121048-CDS-M-pyrifera_M_contig90180:381..7721692278193.4121048-CDS-M-pyrifera_M_contig90180:381..772Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90180 382..772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90180.20900.1prot_M-pyrifera_M_contig90180.20900.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90180 40..772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90180.20900.1

>prot_M-pyrifera_M_contig90180.20900.1 ID=prot_M-pyrifera_M_contig90180.20900.1|Name=mRNA_M-pyrifera_M_contig90180.20900.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=221bp
SRADERRGGLPGPRRAAAALPQHTSLPEPHLCLRGGLQRHEGGHGEPDRC
HPLVARAPPRERPGDLRGLLQRRARLRVGPRRRQLCRGLPRHANADGRGA
RAAAGEGEPLQGATAALQGKSAHGAAVLGGRAARGGRARQAGPRTAPEEP
GRRALHCPRVCEGYGGPAGRSHGRRCADALADDSGEVPESRLHNYVGGRV
VVCLSGCPNFGPGGVKEGSDD
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mRNA from alignment at M-pyrifera_M_contig90180:40..772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90180.20900.1 ID=mRNA_M-pyrifera_M_contig90180.20900.1|Name=mRNA_M-pyrifera_M_contig90180.20900.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=733bp|location=Sequence derived from alignment at M-pyrifera_M_contig90180:40..772+ (Macrocystis pyrifera P11B4 male)
TCCCGAGCTGACGAGCGCCGCGGTGGACTACCTGGACCCCGCCGCGCAGC
CGCCGCTCTACCGCAGCACACATCCCTCCCAGAGCCCCACCTTTGCCTTC
GTGGTGGACTCCAACGCCACGAGGGGGGACATGGCGAGCCTGACCGATGC
CATCCGCTCGTCGCTCGAGCTCCTCCCAGAGAACGCCCAGGTGATCTTCG
TGGTCTTCTCCAACGTCGTGCGCGTCTACGAGTTGGGCCTCGCCGGCGCC
AGCTCTGCAGAGGTCTTCCCAGGTGCGTCTCCCTGTCCCCTCGCTCCTCT
CCTTGGCTCCACCGCCGCCCTGCCCGCCCGCTGACGCGCCAGGCATGCGA
ATGCCGACGGACGAGGAGCGCGAGCAGCTGCGGGTGAAGGCGAGCCGCTT
CAGGGTGCCACTGCGGCACTGCAAGGCAAATCTGCGCACGGTGCTGCAGT
ACTGGGCGGGCGCGCAGCCAGAGGAGGACGCGCGCGGCAAGCAGGGCCGC
GTACAGCACCAGAGGAGCCTGGCCGTCGCGCTCTCCATTGCCCTCGAGTT
TGTGAAGGGTACGGAGGGCCCGCTGGCCGCTCCCACGGCCGCCGCTGTGC
TGACGCCTTGGCAGACGACAGCGGGGAGGTGCCAGAGAGCCGCCTCCACA
ACTACGTGGGTGGCAGAGTGGTCGTTTGCCTCTCCGGATGCCCAAACTTT
GGGCCAGGGGGCGTGAAGGAGGGCTCGGACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90180:40..772+

>mRNA_M-pyrifera_M_contig90180.20900.1 ID=mRNA_M-pyrifera_M_contig90180.20900.1|Name=mRNA_M-pyrifera_M_contig90180.20900.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1326bp|location=Sequence derived from alignment at M-pyrifera_M_contig90180:40..772+ (Macrocystis pyrifera P11B4 male)
TCCCGAGCTGACGAGCGCCGCGGTGGACTACCTGGACCCCGCCGCGCAGC
CGCCGCTCTACCGCAGCACACATCCCTCCCAGAGCCCCACCTTTGCCTTC
GTGGTGGACTCCAACGCCACGAGGGGGGACATGGCGAGCCTGACCGATGC
CATCCGCTCGTCGCTCGAGCTCCTCCCAGAGAACGCCCAGGTGATCTTCG
TGGTCTTCTCCAACGTCGTGCGCGTCTACGAGTTGGGCCTCGCCGGCGCC
AGCTCTGCAGAGGTCTTCCCAGTCCCGAGCTGACGAGCGCCGCGGTGGAC
TACCTGGACCCCGCCGCGCAGCCGCCGCTCTACCGCAGCACACATCCCTC
CCAGAGCCCCACCTTTGCCTTCGTGGTGGACTCCAACGCCACGAGGGGGG
ACATGGCGAGCCTGACCGATGCCATCCGCTCGTCGCTCGAGCTCCTCCCA
GAGAACGCCCAGGTGATCTTCGTGGTCTTCTCCAACGTCGTGCGCGTCTA
CGAGTTGGGCCTCGCCGGCGCCAGCTCTGCAGAGGTCTTCCCAGGCATGC
GAATGCCGACGGACGAGGAGCGCGAGCAGCTGCGGGTGAAGGCGAGCCGC
TTCAGGGTGCCACTGCGGCACTGCAAGGCAAATCTGCGCACGGTGCTGCA
GTACTGGGCGGGCGCGCAGCCAGAGGAGGACGCGCGCGGCAAGCAGGGCC
GCGTACAGCACCAGAGGAGCCTGGCCGTCGCGCTCTCCATTGCCCTCGAG
TTTGTGAAGGGTACGGAGGGCCCGCTGGCCGCTCCCACGGCCGCCGCTGT
GCTGACGCCTTGGCAGACGACAGCGGGGAGGTGCCAGAGAGCCGCCTCCA
CAACTACGTGGGTGGCAGAGTGGTCGTTTGCCTCTCCGGATGCCCAAACT
TTGGGCCAGGGGGCGTGAAGGAGGGCTCGGACGACGCATGCGAATGCCGA
CGGACGAGGAGCGCGAGCAGCTGCGGGTGAAGGCGAGCCGCTTCAGGGTG
CCACTGCGGCACTGCAAGGCAAATCTGCGCACGGTGCTGCAGTACTGGGC
GGGCGCGCAGCCAGAGGAGGACGCGCGCGGCAAGCAGGGCCGCGTACAGC
ACCAGAGGAGCCTGGCCGTCGCGCTCTCCATTGCCCTCGAGTTTGTGAAG
GGTACGGAGGGCCCGCTGGCCGCTCCCACGGCCGCCGCTGTGCTGACGCC
TTGGCAGACGACAGCGGGGAGGTGCCAGAGAGCCGCCTCCACAACTACGT
GGGTGGCAGAGTGGTCGTTTGCCTCTCCGGATGCCCAAACTTTGGGCCAG
GGGGCGTGAAGGAGGGCTCGGACGAC
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