mRNA_M-pyrifera_M_contig90178.20899.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90178.20899.1
Unique NamemRNA_M-pyrifera_M_contig90178.20899.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90178.20899.1 vs. uniprot
Match: A0A8J2RPD9_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2RPD9_9CRUS)

HSP 1 Score: 108 bits (271), Expect = 6.980e-28
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1
Query:    1 RSVTVLLAWAQQATEGYEGVRVSNFTKSFWDGLAFCALVHHYHPRLIDFAALQAADKEHNLRLAFDTAEK-LGVERLLDEEDMLAYPPERLSVITYLFELRKVL 309
            R +  L  W +Q T GY GV+V+N T S+ +GLAFCALVHH+ P LIDFA+L   +  HN +LAF  AE  LG+  LLD EDM+ Y P+RLS++TYL +  +VL
Sbjct:    5 RGMQALEIWCRQVTAGYNGVKVTNMTSSWKNGLAFCALVHHFRPDLIDFASLSPENVYHNNQLAFTVAENILGIPALLDAEDMVNYVPDRLSIMTYLSQFYQVL 108          
BLAST of mRNA_M-pyrifera_M_contig90178.20899.1 vs. uniprot
Match: A0A7L3WF73_9GRUI (EH1L1 protein (Fragment) n=1 Tax=Atlantisia rogersi TaxID=2478892 RepID=A0A7L3WF73_9GRUI)

HSP 1 Score: 107 bits (268), Expect = 9.530e-28
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 1
Query:   16 LLAWAQQATEGYEGVRVSNFTKSFWDGLAFCALVHHYHPRLIDFAALQAADKEHNLRLAFDTAEKLGVERLLDEEDMLAYP-PERLSVITYLFELR 300
            LLAW Q+ T GY GVRV+NF+ S+  GLAFCAL+H +HPRL+D+ AL   D   N +LAFD    LGV RLLD  DM+  P P+RL V+TYL ++R
Sbjct:    8 LLAWCQEVTAGYRGVRVTNFSTSWRSGLAFCALLHRHHPRLLDYEALDPLDIRGNNKLAFDAFSALGVPRLLDPADMVLPPTPDRLGVMTYLSQVR 103          
BLAST of mRNA_M-pyrifera_M_contig90178.20899.1 vs. uniprot
Match: A0A1I8J919_9PLAT (Calponin-homology (CH) domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8J919_9PLAT)

HSP 1 Score: 109 bits (272), Expect = 1.500e-27
Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    7 VTVLLAWAQQATEGYEGVRVSNFTKSFWDGLAFCALVHHYHPRLIDFAALQAADKEHNLRLAFDTAEKLGVERLLDEEDMLAYPPERLSVITY 285
            +  LL W QQ T+GY  VRV NFT SF DGLAFCA++H Y P L++F +LQ AD   N RLAF+TAE LG+  LLD EDM    PE+LS+ITY
Sbjct:    7 IQALLRWCQQQTDGYANVRVRNFTSSFKDGLAFCAILHRYRPDLVNFHSLQPADWLENNRLAFETAETLGIPALLDAEDMEV--PEKLSIITY 97          
BLAST of mRNA_M-pyrifera_M_contig90178.20899.1 vs. uniprot
Match: A0A6B2LPY3_9EUKA (Calponin-homology (CH) domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LPY3_9EUKA)

HSP 1 Score: 107 bits (266), Expect = 1.620e-27
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 1
Query:   16 LLAWAQQATEGYEGVRVSNFTKSFWDGLAFCALVHHYHPRLIDFAALQAADKEHNLRLAFDTAEKLGVERLLDEEDMLAYPPERLSVITYL 288
            +LAW ++ T+GY+GV V NF  S+ DGLAFCA++H+YHP  I+F  L + D   N +LAFDTA+K GV  LLD EDML   PE+ S++TYL
Sbjct:    1 MLAWTKRVTQGYKGVNVENFHTSWRDGLAFCAIIHYYHPEAINFDKLDSKDILQNNQLAFDTAKKFGVPPLLDAEDMLMTKPEQFSIMTYL 91          
BLAST of mRNA_M-pyrifera_M_contig90178.20899.1 vs. uniprot
Match: A0A1A9UHL6_GLOAU (Calponin-homology (CH) domain-containing protein n=2 Tax=Glossina TaxID=44049 RepID=A0A1A9UHL6_GLOAU)

HSP 1 Score: 105 bits (261), Expect = 5.920e-27
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 RSVTVLLAWAQQATEGYEGVRVSNFTKSFWDGLAFCALVHHYHPRLIDFAALQAADKEHNLRLAFDTAEK-LGVERLLDEEDMLAYP-PERLSVITYLFELRKV 306
            R    L  W ++ TEGY GV++ N T S+ DGLAFCA++HH+ P LIDF  L  AD  +N  LAF TAEK LG+  LLD +DM AY  P+RLS++TYL +  +V
Sbjct:    5 RGTKALELWCRRMTEGYPGVKIDNMTTSWRDGLAFCAMIHHFRPDLIDFDKLNKADVYYNNSLAFTTAEKYLGIPALLDADDMAAYEVPDRLSILTYLSQFYQV 108          
BLAST of mRNA_M-pyrifera_M_contig90178.20899.1 vs. uniprot
Match: A0A6A4JKI0_APOLU (Calponin-homology (CH) domain-containing protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4JKI0_APOLU)

HSP 1 Score: 105 bits (262), Expect = 9.090e-27
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 RSVTVLLAWAQQATEGYEGVRVSNFTKSFWDGLAFCALVHHYHPRLIDFAALQAADKEHNLRLAFDTAEK-LGVERLLDEEDMLAYP-PERLSVITYLFELRKV 306
            R    L AW ++ T+GY GV+V N T S+ DGLAFCAL+HH+ P LIDF +L  +D   N  LAF  AE+ LG+  LLD EDM  YP P+RLS++TYL +  +V
Sbjct:    5 RGTKALEAWCKRVTQGYHGVKVENMTTSWRDGLAFCALIHHFRPDLIDFESLNKSDVIGNNELAFSIAERHLGIPALLDAEDMAEYPVPDRLSILTYLSQFYQV 108          
BLAST of mRNA_M-pyrifera_M_contig90178.20899.1 vs. uniprot
Match: UPI001F056A22 (MICAL-like protein 2 n=1 Tax=Lucilia cuprina TaxID=7375 RepID=UPI001F056A22)

HSP 1 Score: 104 bits (259), Expect = 1.300e-26
Identity = 53/104 (50.96%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 RSVTVLLAWAQQATEGYEGVRVSNFTKSFWDGLAFCALVHHYHPRLIDFAALQAADKEHNLRLAFDTAEK-LGVERLLDEEDMLAYP-PERLSVITYLFELRKV 306
            R    L  W ++ TEGY GV++ N T S+ DGLAFCA++HH+ P LIDF  L  +D  +N  LAF TAEK LG+  LLD +DM AY  P+RLS++TYL +  +V
Sbjct:    5 RGTKALELWCRRMTEGYSGVKIDNMTTSWRDGLAFCAMIHHFRPDLIDFDKLNKSDVYYNNALAFTTAEKYLGIPALLDADDMAAYEVPDRLSILTYLSQFYQV 108          
BLAST of mRNA_M-pyrifera_M_contig90178.20899.1 vs. uniprot
Match: A0A1B0G0M6_GLOMM (Calponin-homology (CH) domain-containing protein n=1 Tax=Glossina morsitans morsitans TaxID=37546 RepID=A0A1B0G0M6_GLOMM)

HSP 1 Score: 105 bits (261), Expect = 1.830e-26
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 RSVTVLLAWAQQATEGYEGVRVSNFTKSFWDGLAFCALVHHYHPRLIDFAALQAADKEHNLRLAFDTAEK-LGVERLLDEEDMLAYP-PERLSVITYLFELRKV 306
            R    L  W ++ TEGY GV++ N T S+ DGLAFCA++HH+ P LIDF  L  AD  +N  LAF TAEK LG+  LLD +DM AY  P+RLS++TYL +  +V
Sbjct:    5 RGTKALELWCRRMTEGYPGVKIDNMTTSWRDGLAFCAMIHHFRPDLIDFDKLNKADVYYNNSLAFTTAEKYLGIPALLDADDMAAYEVPDRLSILTYLSQFYQV 108          
BLAST of mRNA_M-pyrifera_M_contig90178.20899.1 vs. uniprot
Match: A0A1V9XRM3_9ACAR (MICAL protein 2-like (Fragment) n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XRM3_9ACAR)

HSP 1 Score: 103 bits (258), Expect = 3.560e-26
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    1 RSVTVLLAWAQQATEGYEGVRVSNFTKSFWDGLAFCALVHHYHPRLIDFAALQAADKEHNLRLAFDTAEK-LGVERLLDEEDMLAYP-PERLSVITY 285
            R ++ L  W Q+AT+GY GVRVS+ + S+ DGLAFCAL+HHY P LIDF +L A +   N +LAF  AE+ LG+  LLD EDM  YP P+RLS+ TY
Sbjct:   18 RGLSALQYWCQKATQGYPGVRVSDMSSSWRDGLAFCALIHHYRPDLIDFGSLHARNILENNQLAFRVAEEQLGIPALLDAEDMEKYPVPDRLSIATY 114          
BLAST of mRNA_M-pyrifera_M_contig90178.20899.1 vs. uniprot
Match: A0A164Q5D4_9CRUS (Putative MICAL protein 2 n=6 Tax=Daphnia magna TaxID=35525 RepID=A0A164Q5D4_9CRUS)

HSP 1 Score: 110 bits (275), Expect = 5.670e-26
Identity = 56/105 (53.33%), Postives = 73/105 (69.52%), Query Frame = 1
Query:    1 RSVTVLLAWAQQATEGYEGVRVSNFTKSFWDGLAFCALVHHYHPRLIDFAALQAADKEHNLRLAFDTAEK-LGVERLLDEEDMLAYPPERLSVITYLFELRKVLV 312
            R +  L  W +Q T GY GV+V+N T S+ DGLAFCALVHH+ P LIDFA+L A +  +N +LAF  AE  LG+  LLD EDM+ Y P+RLS++TYL +  + LV
Sbjct:    5 RGMQALEIWCRQVTAGYNGVKVTNMTSSWKDGLAFCALVHHFRPDLIDFASLSAENVYYNNQLAFSVAENVLGIPALLDAEDMVNYIPDRLSIMTYLSQFYQALV 109          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90178.20899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2RPD9_9CRUS6.980e-2852.88Hypothetical protein n=1 Tax=Daphnia galeata TaxID... [more]
A0A7L3WF73_9GRUI9.530e-2856.25EH1L1 protein (Fragment) n=1 Tax=Atlantisia rogers... [more]
A0A1I8J919_9PLAT1.500e-2759.14Calponin-homology (CH) domain-containing protein n... [more]
A0A6B2LPY3_9EUKA1.620e-2754.95Calponin-homology (CH) domain-containing protein (... [more]
A0A1A9UHL6_GLOAU5.920e-2751.92Calponin-homology (CH) domain-containing protein n... [more]
A0A6A4JKI0_APOLU9.090e-2751.92Calponin-homology (CH) domain-containing protein n... [more]
UPI001F056A221.300e-2650.96MICAL-like protein 2 n=1 Tax=Lucilia cuprina TaxID... [more]
A0A1B0G0M6_GLOMM1.830e-2651.92Calponin-homology (CH) domain-containing protein n... [more]
A0A1V9XRM3_9ACAR3.560e-2655.67MICAL protein 2-like (Fragment) n=1 Tax=Tropilaela... [more]
A0A164Q5D4_9CRUS5.670e-2653.33Putative MICAL protein 2 n=6 Tax=Daphnia magna Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90178contigM-pyrifera_M_contig90178:399..716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score110.2
Seed ortholog evalue6.2e-22
Seed eggNOG ortholog6669.EFX73806
Preferred nameMICAL-like
KEGG koko:K19948
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0008092
EggNOG free text desc.Rab GTPase binding. It is involved in the biological process described with endocytic recycling
EggNOG OGs2QWQX@2759,394E9@33154,3BIXY@33208,3CYRQ@33213,41W85@6656,COG5069@1
COG Functional cat.Z
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.9130812-CDS-M-pyrifera_M_contig90178:398..7161622816812.9130812-CDS-M-pyrifera_M_contig90178:398..716Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90178 399..716 -
1692278193.3895252-CDS-M-pyrifera_M_contig90178:398..7161692278193.3895252-CDS-M-pyrifera_M_contig90178:398..716Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90178 399..716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90178.20899.1prot_M-pyrifera_M_contig90178.20899.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90178 399..716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90178.20899.1

>prot_M-pyrifera_M_contig90178.20899.1 ID=prot_M-pyrifera_M_contig90178.20899.1|Name=mRNA_M-pyrifera_M_contig90178.20899.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
RSVTVLLAWAQQATEGYEGVRVSNFTKSFWDGLAFCALVHHYHPRLIDFA
ALQAADKEHNLRLAFDTAEKLGVERLLDEEDMLAYPPERLSVITYLFELR
KVLVR*
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mRNA from alignment at M-pyrifera_M_contig90178:399..716-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90178.20899.1 ID=mRNA_M-pyrifera_M_contig90178.20899.1|Name=mRNA_M-pyrifera_M_contig90178.20899.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig90178:399..716- (Macrocystis pyrifera P11B4 male)
CGCAGTGTGACAGTGTTGTTGGCGTGGGCACAGCAGGCAACAGAAGGCTA CGAGGGAGTGCGAGTGTCGAACTTCACGAAGAGCTTCTGGGACGGCCTGG CCTTCTGTGCGCTCGTCCACCACTACCACCCCCGCCTCATCGACTTCGCT GCCCTCCAGGCGGCCGACAAGGAGCACAACCTCCGCCTCGCCTTCGACAC TGCGGAGAAGTTGGGTGTGGAGCGCCTGCTGGACGAGGAAGACATGCTGG CCTACCCACCCGAGCGCCTCTCCGTCATCACCTACCTCTTCGAGCTCCGC AAGGTGCTCGTTCGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90178:399..716-

>mRNA_M-pyrifera_M_contig90178.20899.1 ID=mRNA_M-pyrifera_M_contig90178.20899.1|Name=mRNA_M-pyrifera_M_contig90178.20899.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig90178:399..716- (Macrocystis pyrifera P11B4 male)
CGCAGTGTGACAGTGTTGTTGGCGTGGGCACAGCAGGCAACAGAAGGCTA
CGAGGGAGTGCGAGTGTCGAACTTCACGAAGAGCTTCTGGGACGGCCTGG
CCTTCTGTGCGCTCGTCCACCACTACCACCCCCGCCTCATCGACTTCGCT
GCCCTCCAGGCGGCCGACAAGGAGCACAACCTCCGCCTCGCCTTCGACAC
TGCGGAGAAGTTGGGTGTGGAGCGCCTGCTGGACGAGGAAGACATGCTGG
CCTACCCACCCGAGCGCCTCTCCGTCATCACCTACCTCTTCGAGCTCCGC
AAGGTGCTCGTTCGCTGACGCAGTGTGACAGTGTTGTTGGCGTGGGCACA
GCAGGCAACAGAAGGCTACGAGGGAGTGCGAGTGTCGAACTTCACGAAGA
GCTTCTGGGACGGCCTGGCCTTCTGTGCGCTCGTCCACCACTACCACCCC
CGCCTCATCGACTTCGCTGCCCTCCAGGCGGCCGACAAGGAGCACAACCT
CCGCCTCGCCTTCGACACTGCGGAGAAGTTGGGTGTGGAGCGCCTGCTGG
ACGAGGAAGACATGCTGGCCTACCCACCCGAGCGCCTCTCCGTCATCACC
TACCTCTTCGAGCTCCGCAAGGTGCTCGTTCGCTGA
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