mRNA_M-pyrifera_M_contig90172.20895.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90172.20895.1
Unique NamemRNA_M-pyrifera_M_contig90172.20895.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90172.20895.1 vs. uniprot
Match: A0A2A4UZ51_9GAMM (Uncharacterized protein n=1 Tax=Moraxellaceae bacterium TaxID=1889775 RepID=A0A2A4UZ51_9GAMM)

HSP 1 Score: 165 bits (418), Expect = 3.920e-49
Identity = 80/146 (54.79%), Postives = 109/146 (74.66%), Query Frame = 1
Query:    7 GSGWGLAKAAELNGVPGPSHILEMKKEIGLSLDQESKIQAIFDDMQSKAIDTGIKLIEKEKELNQAFVSKEISEEKKKKMTLEIGNLRGELTFIHLVAHLEASEILSKEQIDNYNRLRGYTTSSFDPCNSIPDGHNPEMWKKHNNC 444
            G GWGLAK AELNG+PGP+H+L +KKEI LSLDQE+KIQA++D+M+ KAI  G +L+  EKELN++F ++ I++E+  +    I N+R EL ++HLV H+   +IL+ +QI  YNRLRGY     DPC +IP GH+  MWKKHN+C
Sbjct:   52 GKGWGLAKVAELNGLPGPAHVLMLKKEISLSLDQEAKIQALYDEMKKKAIPLGYRLVALEKELNESFANRTITKERLTQQLDLISNVRKELRYVHLVTHVMTPQILTTQQISEYNRLRGYY--KIDPCKNIPRGHDVVMWKKHNDC 195          
BLAST of mRNA_M-pyrifera_M_contig90172.20895.1 vs. uniprot
Match: UPI001B3B1ED6 (hypothetical protein n=1 Tax=Vibrio agarilyticus TaxID=2726741 RepID=UPI001B3B1ED6)

HSP 1 Score: 163 bits (413), Expect = 2.120e-48
Identity = 84/146 (57.53%), Postives = 104/146 (71.23%), Query Frame = 1
Query:    7 GSGWGLAKAAELNGVPGPSHILEMKKEIGLSLDQESKIQAIFDDMQSKAIDTGIKLIEKEKELNQAFVSKEISEEKKKKMTLEIGNLRGELTFIHLVAHLEASEILSKEQIDNYNRLRGYTTSSFDPCNSIPDGHNPEMWKKHNNC 444
            G GWGLAKAAELNGVPGP+HILEM  EIGL+ DQE+KIQ I+D+M+ +AI+ G +LI  EK LN  F +K I++   +    +I  +R +L  IHL  HL+   IL+ EQI  YN LRGY   S DPC +IP+GHNPEMWKKHN C
Sbjct:   50 GGGWGLAKAAELNGVPGPAHILEMGSEIGLTSDQENKIQVIYDNMKIEAIELGKQLINLEKILNNGFSNKTINQSLLENTVQDIEKVRAKLRVIHLSTHLQTPSILTTEQIKRYNELRGY---SNDPCKNIPEGHNPEMWKKHNGC 192          
BLAST of mRNA_M-pyrifera_M_contig90172.20895.1 vs. uniprot
Match: A0A1B6YCM7_9BACT (Uncharacterized protein n=2 Tax=Balneola sp. EhC07 TaxID=1849360 RepID=A0A1B6YCM7_9BACT)

HSP 1 Score: 163 bits (412), Expect = 3.700e-48
Identity = 80/148 (54.05%), Postives = 111/148 (75.00%), Query Frame = 1
Query:    1 RAGSGWGLAKAAELNGVPGPSHILEMKKEIGLSLDQESKIQAIFDDMQSKAIDTGIKLIEKEKELNQAFVSKEISEEKKKKMTLEIGNLRGELTFIHLVAHLEASEILSKEQIDNYNRLRGYTTSSFDPCNSIPDGHNPEMWKKHNNC 444
            +AG GWG AKAAELNG+PGP H+LEMK+EI L+ +Q  KI+ IF  M+++AI  G +L+  EK+LN  F  ++  +++ K+M ++I  + GEL F+HL AHL+  +IL+K Q++ YN LRGYT  S DPC +IP+GHNPEMWK+HNNC
Sbjct:   55 KAGKGWGFAKAAELNGIPGPLHLLEMKEEIVLTEEQIKKIKVIFKAMKAEAITFGNELVSAEKKLNIFFAEQKNDQDELKEMLMDISEITGELRFVHLNAHLKTLKILTKAQVNLYNELRGYT--SQDPCENIPEGHNPEMWKRHNNC 200          
BLAST of mRNA_M-pyrifera_M_contig90172.20895.1 vs. uniprot
Match: A0A7Y2I7M0_9DELT (Uncharacterized protein n=3 Tax=Desulfofustis sp. TaxID=2053546 RepID=A0A7Y2I7M0_9DELT)

HSP 1 Score: 162 bits (410), Expect = 6.030e-48
Identity = 83/148 (56.08%), Postives = 106/148 (71.62%), Query Frame = 1
Query:    1 RAGSGWGLAKAAELNGVPGPSHILEMKKEIGLSLDQESKIQAIFDDMQSKAIDTGIKLIEKEKELNQAFVSKEISEEKKKKMTLEIGNLRGELTFIHLVAHLEASEILSKEQIDNYNRLRGYTTSSFDPCNSIPDGHNPEMWKKHNNC 444
            R G GWGLA AAELNGVPGP H+LEMKKEI LS +Q  +I+A+F+ M+ +AI+ G  LI+ E+ELN  F    I+E+  + +  +I  +R +L F+HL  HL+  +IL+ EQI  YN LRGY  SS DPC +IP GHNPEMWKKHNNC
Sbjct:   49 RDGGGWGLALAAELNGVPGPVHLLEMKKEIRLSPEQIGQIEALFEQMRGQAIELGTTLIDLERELNSQFAEGTINEKLLRDLLEQIAQVRTQLRFVHLSTHLKTPDILTTEQIARYNELRGY--SSDDPCTNIPAGHNPEMWKKHNNC 194          
BLAST of mRNA_M-pyrifera_M_contig90172.20895.1 vs. uniprot
Match: A0A7Y3ACY8_9DELT (Uncharacterized protein n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A7Y3ACY8_9DELT)

HSP 1 Score: 159 bits (402), Expect = 1.040e-46
Identity = 78/148 (52.70%), Postives = 111/148 (75.00%), Query Frame = 1
Query:    1 RAGSGWGLAKAAELNGVPGPSHILEMKKEIGLSLDQESKIQAIFDDMQSKAIDTGIKLIEKEKELNQAFVSKEISEEKKKKMTLEIGNLRGELTFIHLVAHLEASEILSKEQIDNYNRLRGYTTSSFDPCNSIPDGHNPEMWKKHNNC 444
            R G GWGLAKAAELNGVPGP+H+LE+K+EI L+ +Q ++I+ ++ +M+++AI  GI+LIE E+ LN  F  + I+ E   +   +I   + +L ++HL  HL+ +++L+ EQID YN+LRGY  SS DPC SIPDGH+P+MWKKHNNC
Sbjct:   51 RNGQGWGLAKAAELNGVPGPAHVLELKQEISLNPEQVAEIKRLYQNMKNQAIPLGIELIELERVLNNHFADRSITAEILHESLEQIAQTQKQLRYVHLSMHLKTADLLTPEQIDLYNKLRGY--SSDDPCKSIPDGHDPKMWKKHNNC 196          
BLAST of mRNA_M-pyrifera_M_contig90172.20895.1 vs. uniprot
Match: A0A7Y2DTN1_9BACT (Uncharacterized protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7Y2DTN1_9BACT)

HSP 1 Score: 159 bits (401), Expect = 1.520e-46
Identity = 77/148 (52.03%), Postives = 106/148 (71.62%), Query Frame = 1
Query:    1 RAGSGWGLAKAAELNGVPGPSHILEMKKEIGLSLDQESKIQAIFDDMQSKAIDTGIKLIEKEKELNQAFVSKEISEEKKKKMTLEIGNLRGELTFIHLVAHLEASEILSKEQIDNYNRLRGYTTSSFDPCNSIPDGHNPEMWKKHNNC 444
            RAG GWGLAKAAELNG PGP H++EMK ++GLS  Q  KI+ ++  M+ +A+  G+KLIE EK L+  F +K I++E+  ++  EIG +  +L   HL  HL+  +ILS++QI  YNRL GY  +S DPC S+P+GH+P MW+KHNNC
Sbjct:   52 RAGKGWGLAKAAELNGYPGPVHLIEMKDKLGLSRQQLLKIEELYSGMKKEAVPLGLKLIELEKNLDSGFANKTINKERLDELLKEIGQVTADLRSAHLSVHLKTPDILSQKQISTYNRLSGY--NSTDPCKSVPEGHDPAMWRKHNNC 197          
BLAST of mRNA_M-pyrifera_M_contig90172.20895.1 vs. uniprot
Match: A0A7Y2GJ91_9BACT (Uncharacterized protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7Y2GJ91_9BACT)

HSP 1 Score: 158 bits (399), Expect = 2.710e-46
Identity = 77/146 (52.74%), Postives = 101/146 (69.18%), Query Frame = 1
Query:    7 GSGWGLAKAAELNGVPGPSHILEMKKEIGLSLDQESKIQAIFDDMQSKAIDTGIKLIEKEKELNQAFVSKEISEEKKKKMTLEIGNLRGELTFIHLVAHLEASEILSKEQIDNYNRLRGYTTSSFDPCNSIPDGHNPEMWKKHNNC 444
            G GWGLAKAAELNG+PGP H++EMK +IGL   +  KI+ ++++M+  A+  G +LIE EKEL++ F  K I  E  K    EI  +R +L F+HL  HL+  EIL+KEQI  YN LRGY     DPC ++P+GH+P MWKKHNNC
Sbjct:   50 GQGWGLAKAAELNGLPGPVHLIEMKDKIGLEGTKLKKIEKLYNEMKKNAVPLGKRLIELEKELDRGFSKKTIDSESLKTQLSEIAKVRADLRFVHLSTHLKTPEILTKEQISKYNELRGY--GKGDPCKNVPEGHDPAMWKKHNNC 193          
BLAST of mRNA_M-pyrifera_M_contig90172.20895.1 vs. uniprot
Match: V4J101_9DELT (Uncharacterized protein n=1 Tax=Desulfofustis sp. PB-SRB1 TaxID=1385624 RepID=V4J101_9DELT)

HSP 1 Score: 155 bits (391), Expect = 5.130e-45
Identity = 79/146 (54.11%), Postives = 102/146 (69.86%), Query Frame = 1
Query:    7 GSGWGLAKAAELNGVPGPSHILEMKKEIGLSLDQESKIQAIFDDMQSKAIDTGIKLIEKEKELNQAFVSKEISEEKKKKMTLEIGNLRGELTFIHLVAHLEASEILSKEQIDNYNRLRGYTTSSFDPCNSIPDGHNPEMWKKHNNC 444
            G GWGLAKAAELNG+PGP H+LEMK EIGLS  Q  +I+A+++ M+  AI  G KLIE E  LN  F    I+++   ++  EIG  R +L ++HL AHL+   +++ EQID YNRLRGY   S DPC +IP GH+P+MWK HNNC
Sbjct:   55 GGGWGLAKAAELNGMPGPIHLLEMKTEIGLSTQQIEEIEALYESMRQAAIPLGEKLIELETVLNDQFADGTITDDSLARLLEEIGATRSQLRYVHLSAHLKTPLMVTAEQIDEYNRLRGYF--SDDPCANIPAGHDPQMWKMHNNC 198          
BLAST of mRNA_M-pyrifera_M_contig90172.20895.1 vs. uniprot
Match: A0A7C7Y3Z9_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C7Y3Z9_9GAMM)

HSP 1 Score: 154 bits (390), Expect = 6.650e-45
Identity = 78/147 (53.06%), Postives = 103/147 (70.07%), Query Frame = 1
Query:    7 GSGWGLAKAAELNGVPGPSHILEMKKEIGLSLDQESKIQAIFDDMQSKAIDTGIKLIEKEKELNQAFVSKEISEEKKKKMTLEIGNLRGELTFIHLVAHLEASEILSKEQIDNYNRLRGYTTSSFDPCNSIPDGHNPEMWKKHNNCE 447
            G GWGLAK AELNGVPGP+H+LEMK EIGLS +Q S I+ I+ +M   A   G   +  E+ELN+ F + +I+ +  K + L+I  ++ EL + HL AHL+A+ +L   Q+  YNRLRGY  SS DPC +IP+GH+P MWKKHNNCE
Sbjct:   52 GRGWGLAKPAELNGVPGPAHLLEMKTEIGLSAEQVSAIEVIWSEMNQNARRLGEHYVALERELNEQFATGQITSDTLKTLLLKIATVQTELRYTHLFAHLQANPVLKPAQVALYNRLRGY--SSDDPCLNIPEGHDPNMWKKHNNCE 196          
BLAST of mRNA_M-pyrifera_M_contig90172.20895.1 vs. uniprot
Match: A0A1V1WYZ4_9DELT (Uncharacterized protein n=1 Tax=Desulfobacterales bacterium PC51MH44 TaxID=1869304 RepID=A0A1V1WYZ4_9DELT)

HSP 1 Score: 154 bits (390), Expect = 7.270e-45
Identity = 77/147 (52.38%), Postives = 105/147 (71.43%), Query Frame = 1
Query:    4 AGSGWGLAKAAELNGVPGPSHILEMKKEIGLSLDQESKIQAIFDDMQSKAIDTGIKLIEKEKELNQAFVSKEISEEKKKKMTLEIGNLRGELTFIHLVAHLEASEILSKEQIDNYNRLRGYTTSSFDPCNSIPDGHNPEMWKKHNNC 444
            AG GWGLAKAAELNG PGP H+LEMK EI L+  Q  KI+ ++++M  +AI  G KLIE E+ LN+AF  +EI E    ++   I  +R +L ++HL AHL+   ILS EQI+ YN+LRGY+ SS +PC+ +P GH+ E+WK+H+NC
Sbjct:   53 AGKGWGLAKAAELNGFPGPIHLLEMKHEIKLTKTQTEKIEELYNEMNERAIPLGKKLIEAERSLNRAFAKREIDERILVELLANIARIRNKLRYVHLSAHLKTPPILSLEQIELYNKLRGYS-SSENPCDKVPPGHDSELWKRHHNC 198          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90172.20895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2A4UZ51_9GAMM3.920e-4954.79Uncharacterized protein n=1 Tax=Moraxellaceae bact... [more]
UPI001B3B1ED62.120e-4857.53hypothetical protein n=1 Tax=Vibrio agarilyticus T... [more]
A0A1B6YCM7_9BACT3.700e-4854.05Uncharacterized protein n=2 Tax=Balneola sp. EhC07... [more]
A0A7Y2I7M0_9DELT6.030e-4856.08Uncharacterized protein n=3 Tax=Desulfofustis sp. ... [more]
A0A7Y3ACY8_9DELT1.040e-4652.70Uncharacterized protein n=1 Tax=Desulfobacterales ... [more]
A0A7Y2DTN1_9BACT1.520e-4652.03Uncharacterized protein n=1 Tax=Pyrinomonadaceae b... [more]
A0A7Y2GJ91_9BACT2.710e-4652.74Uncharacterized protein n=1 Tax=Pyrinomonadaceae b... [more]
V4J101_9DELT5.130e-4554.11Uncharacterized protein n=1 Tax=Desulfofustis sp. ... [more]
A0A7C7Y3Z9_9GAMM6.650e-4553.06Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A1V1WYZ4_9DELT7.270e-4552.38Uncharacterized protein n=1 Tax=Desulfobacterales ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90172contigM-pyrifera_M_contig90172:341..793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score143.7
Seed ortholog evalue7.2e-32
Seed eggNOG ortholog1100720.ALKN01000024_gene1568
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP-independent chaperone mediated protein folding
EggNOG OGs1MZKK@1224,2W3Z1@28216,4AIAU@80864,COG3678@1,COG3678@2
COG Functional cat.NPTU
Best tax levelComamonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size453
Cds size453
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.776475-CDS-M-pyrifera_M_contig90172:340..7931622816812.776475-CDS-M-pyrifera_M_contig90172:340..793Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90172 341..793 -
1692278193.3234727-CDS-M-pyrifera_M_contig90172:340..7931692278193.3234727-CDS-M-pyrifera_M_contig90172:340..793Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90172 341..793 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90172.20895.1prot_M-pyrifera_M_contig90172.20895.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90172 341..793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90172.20895.1

>prot_M-pyrifera_M_contig90172.20895.1 ID=prot_M-pyrifera_M_contig90172.20895.1|Name=mRNA_M-pyrifera_M_contig90172.20895.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
RAGSGWGLAKAAELNGVPGPSHILEMKKEIGLSLDQESKIQAIFDDMQSK
AIDTGIKLIEKEKELNQAFVSKEISEEKKKKMTLEIGNLRGELTFIHLVA
HLEASEILSKEQIDNYNRLRGYTTSSFDPCNSIPDGHNPEMWKKHNNCEG
*
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mRNA from alignment at M-pyrifera_M_contig90172:341..793-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90172.20895.1 ID=mRNA_M-pyrifera_M_contig90172.20895.1|Name=mRNA_M-pyrifera_M_contig90172.20895.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig90172:341..793- (Macrocystis pyrifera P11B4 male)
AGAGCTGGAAGTGGTTGGGGATTAGCGAAAGCTGCCGAACTAAATGGGGT GCCCGGTCCTTCTCATATACTTGAAATGAAAAAAGAAATTGGATTGAGTT TAGATCAGGAGAGCAAAATTCAAGCAATTTTCGATGACATGCAGAGTAAA GCGATTGATACAGGGATAAAACTGATTGAAAAAGAAAAAGAATTGAATCA AGCTTTTGTTTCGAAAGAGATTTCAGAGGAAAAGAAAAAAAAAATGACTT TAGAAATAGGAAACTTGAGAGGGGAGTTAACTTTTATTCACTTAGTTGCA CACTTAGAAGCATCTGAAATTCTCTCAAAAGAACAAATTGATAATTATAA TAGGCTACGGGGATACACCACTTCATCTTTCGATCCATGTAATTCGATAC CTGACGGGCATAATCCAGAGATGTGGAAAAAGCATAATAATTGTGAAGGT TAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90172:341..793-

>mRNA_M-pyrifera_M_contig90172.20895.1 ID=mRNA_M-pyrifera_M_contig90172.20895.1|Name=mRNA_M-pyrifera_M_contig90172.20895.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig90172:341..793- (Macrocystis pyrifera P11B4 male)
AGAGCTGGAAGTGGTTGGGGATTAGCGAAAGCTGCCGAACTAAATGGGGT
GCCCGGTCCTTCTCATATACTTGAAATGAAAAAAGAAATTGGATTGAGTT
TAGATCAGGAGAGCAAAATTCAAGCAATTTTCGATGACATGCAGAGTAAA
GCGATTGATACAGGGATAAAACTGATTGAAAAAGAAAAAGAATTGAATCA
AGCTTTTGTTTCGAAAGAGATTTCAGAGGAAAAGAAAAAAAAAATGACTT
TAGAAATAGGAAACTTGAGAGGGGAGTTAACTTTTATTCACTTAGTTGCA
CACTTAGAAGCATCTGAAATTCTCTCAAAAGAACAAATTGATAATTATAA
TAGGCTACGGGGATACACCACTTCATCTTTCGATCCATGTAATTCGATAC
CTGACGGGCATAATCCAGAGATGTGGAAAAAGCATAATAATTGTGAAGGT
TAAAGAGCTGGAAGTGGTTGGGGATTAGCGAAAGCTGCCGAACTAAATGG
GGTGCCCGGTCCTTCTCATATACTTGAAATGAAAAAAGAAATTGGATTGA
GTTTAGATCAGGAGAGCAAAATTCAAGCAATTTTCGATGACATGCAGAGT
AAAGCGATTGATACAGGGATAAAACTGATTGAAAAAGAAAAAGAATTGAA
TCAAGCTTTTGTTTCGAAAGAGATTTCAGAGGAAAAGAAAAAAAAAATGA
CTTTAGAAATAGGAAACTTGAGAGGGGAGTTAACTTTTATTCACTTAGTT
GCACACTTAGAAGCATCTGAAATTCTCTCAAAAGAACAAATTGATAATTA
TAATAGGCTACGGGGATACACCACTTCATCTTTCGATCCATGTAATTCGA
TACCTGACGGGCATAATCCAGAGATGTGGAAAAAGCATAATAATTGTGAA
GGTTAA
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