mRNA_M-pyrifera_M_contig90172.20894.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90172.20894.1
Unique NamemRNA_M-pyrifera_M_contig90172.20894.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90172.20894.1 vs. uniprot
Match: UPI0003812ABE (glycosyltransferase n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI0003812ABE)

HSP 1 Score: 104 bits (259), Expect = 2.070e-24
Identity = 52/111 (46.85%), Postives = 75/111 (67.57%), Query Frame = 1 
Query:    1 QQRRWLRGGFESQWSFKIWLALGFGFHFSISLLFLTGLFFSLQTSLFVLALKFLSDLFMLTSQKILLRKKNILRYFPIQFVYILLIMIWLPASVVINSKISWKGEGYEIKY 333
            QQRRWL+GGFE  W + I L L FGFH  +S+LF+TGLF SL+T++  L +K  +D  +L S+K LL++  +LRY      +++  ++WLP S++INS I W G+ Y I Y
Sbjct:  240 QQRRWLKGGFEGSWKYWIGLVLAFGFHNVLSILFVTGLFVSLKTTMIALIIKTGADFLLLASEKTLLKEPKLLRYLFFMEFHLITTLLWLPISLLINSTIHWMGDDYVITY 350
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90172.20894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0003812ABE2.070e-2446.85glycosyltransferase n=1 Tax=Balneola vulgaris TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90172contigM-pyrifera_M_contig90172:2..340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score104.4
Seed ortholog evalue3.6e-20
Seed eggNOG ortholog1121104.AQXH01000001_gene1524
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Pfam Glycosyl transferase family 2
EggNOG OGs4NKDX@976,COG1215@1,COG1215@2
COG Functional cat.M
Best tax levelBacteroidetes
Best eggNOG OGNA|NA|NA
Exons1
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.7453275-CDS-M-pyrifera_M_contig90172:1..3401622816812.7453275-CDS-M-pyrifera_M_contig90172:1..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90172 2..340 +
1692278193.3087778-CDS-M-pyrifera_M_contig90172:1..3401692278193.3087778-CDS-M-pyrifera_M_contig90172:1..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90172 2..340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90172.20894.1prot_M-pyrifera_M_contig90172.20894.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90172 2..340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90172.20894.1

>prot_M-pyrifera_M_contig90172.20894.1 ID=prot_M-pyrifera_M_contig90172.20894.1|Name=mRNA_M-pyrifera_M_contig90172.20894.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
QQRRWLRGGFESQWSFKIWLALGFGFHFSISLLFLTGLFFSLQTSLFVLA
LKFLSDLFMLTSQKILLRKKNILRYFPIQFVYILLIMIWLPASVVINSKI
SWKGEGYEIKYE*
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mRNA from alignment at M-pyrifera_M_contig90172:2..340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90172.20894.1 ID=mRNA_M-pyrifera_M_contig90172.20894.1|Name=mRNA_M-pyrifera_M_contig90172.20894.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig90172:2..340+ (Macrocystis pyrifera P11B4 male)
CAACAACGGCGCTGGTTACGAGGAGGTTTCGAAAGTCAATGGAGCTTCAA
GATTTGGCTGGCACTTGGCTTTGGATTCCATTTTAGTATCTCTTTACTCT
TTCTCACTGGTCTCTTTTTCTCTTTACAAACAAGTTTATTTGTTCTCGCT
TTAAAGTTCTTATCCGATCTATTTATGCTTACTTCTCAAAAAATATTGCT
TAGAAAAAAGAATATCCTTCGCTACTTCCCAATCCAGTTCGTATATATAC
TTCTCATTATGATTTGGTTGCCAGCCAGTGTTGTAATTAACTCGAAAATA
AGCTGGAAAGGAGAAGGCTACGAAATTAAATATGAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90172:2..340+

>mRNA_M-pyrifera_M_contig90172.20894.1 ID=mRNA_M-pyrifera_M_contig90172.20894.1|Name=mRNA_M-pyrifera_M_contig90172.20894.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig90172:2..340+ (Macrocystis pyrifera P11B4 male)
CAACAACGGCGCTGGTTACGAGGAGGTTTCGAAAGTCAATGGAGCTTCAA
GATTTGGCTGGCACTTGGCTTTGGATTCCATTTTAGTATCTCTTTACTCT
TTCTCACTGGTCTCTTTTTCTCTTTACAAACAAGTTTATTTGTTCTCGCT
TTAAAGTTCTTATCCGATCTATTTATGCTTACTTCTCAAAAAATATTGCT
TAGAAAAAAGAATATCCTTCGCTACTTCCCAATCCAGTTCGTATATATAC
TTCTCATTATGATTTGGTTGCCAGCCAGTGTTGTAATTAACTCGAAAATA
AGCTGGAAAGGAGAAGGCTACGAAATTAAATATGAGTAGCAACAACGGCG
CTGGTTACGAGGAGGTTTCGAAAGTCAATGGAGCTTCAAGATTTGGCTGG
CACTTGGCTTTGGATTCCATTTTAGTATCTCTTTACTCTTTCTCACTGGT
CTCTTTTTCTCTTTACAAACAAGTTTATTTGTTCTCGCTTTAAAGTTCTT
ATCCGATCTATTTATGCTTACTTCTCAAAAAATATTGCTTAGAAAAAAGA
ATATCCTTCGCTACTTCCCAATCCAGTTCGTATATATACTTCTCATTATG
ATTTGGTTGCCAGCCAGTGTTGTAATTAACTCGAAAATAAGCTGGAAAGG
AGAAGGCTACGAAATTAAATATGAGTAG
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