mRNA_M-pyrifera_M_contig90130.20892.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90130.20892.1
Unique NamemRNA_M-pyrifera_M_contig90130.20892.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90130.20892.1 vs. uniprot
Match: A0A382S369_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382S369_9ZZZZ)

HSP 1 Score: 50.8 bits (120), Expect = 1.100e-6
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    4 MIKAAEEGNVDAVNRCISGGVDLESKDKNGDTALHRAAFAGKEEVVSALIKAGAD 168
            + KAA+ GN++AV + ++ G D+ +KD++G T LHRAA  G +E    LI  GAD
Sbjct:   26 IYKAAKTGNIEAVKQHLAAGTDVNAKDEDGGTPLHRAAARGHKETAELLIAQGAD 80
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BLAST of mRNA_M-pyrifera_M_contig90130.20892.1 vs. uniprot
Match: A0A2W5DSY5_9SPHN (Uncharacterized protein (Fragment) n=1 Tax=Sphingomonas hengshuiensis TaxID=1609977 RepID=A0A2W5DSY5_9SPHN)

HSP 1 Score: 50.1 bits (118), Expect = 2.490e-6
Identity = 23/56 (41.07%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 GMIKAAEEGNVDAVNRCISGGVDLESKDKNGDTALHRAAFAGKEEVVSALIKAGAD 168
            G+ +AA+ G+V  + R  + G+D++++D+NG T  H AAFA  ++ + AL +AGAD
Sbjct:   36 GLHRAAQNGDVAEIRRLAAAGMDIDTRDRNGRTPAHVAAFASNDDALRALAQAGAD 91
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BLAST of mRNA_M-pyrifera_M_contig90130.20892.1 vs. uniprot
Match: A0A1Q4A9R4_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium sp. 65-26 TaxID=1895781 RepID=A0A1Q4A9R4_9HYPH)

HSP 1 Score: 50.8 bits (120), Expect = 5.170e-6
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 GMIKAAEEGNVDAVNRCISGGVDLESKDKNGDTALHRAAFAGKEEVVSALIKAGAD 168
            G+ +AA+ GNVD ++R    G  L+ +D+NG T  H AAFA +   + AL KAGAD
Sbjct:   33 GLHRAAQNGNVDDIDRLARAGAPLDGRDRNGRTPAHVAAFAAQAGALRALAKAGAD 88
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BLAST of mRNA_M-pyrifera_M_contig90130.20892.1 vs. uniprot
Match: UPI0015CF9970 (ankyrin repeat domain-containing protein n=1 Tax=Wolbachia endosymbiont of Bemisia tabaci TaxID=215173 RepID=UPI0015CF9970)

HSP 1 Score: 47.4 bits (111), Expect = 1.040e-5
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    4 MIKAAEEGNVDAVNRCISGGVDLESKDKNGDTALHRAAFAGKEEVVSALI 153
            +IK  ++GN+ AV   I  G ++E+KD +G T LHRAA+ G++E+V  L+
Sbjct:    7 LIKEVDQGNIQAVKNFIEQGGNIEAKDNDGWTLLHRAAWKGRKEIVEFLV 56
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BLAST of mRNA_M-pyrifera_M_contig90130.20892.1 vs. uniprot
Match: A0A067M7S0_9AGAM (Protein kinase domain-containing protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067M7S0_9AGAM)

HSP 1 Score: 48.1 bits (113), Expect = 6.410e-5
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   40 VNRCISGGVDLESKDKNGDTALHRAAFAGKEEVVSALIKAGAD 168
            V + ++ G+D+ +KDKNGDT L RAAF G    V AL++AGAD
Sbjct:  153 VAKVLATGIDVNAKDKNGDTLLDRAAFCGSPSAVIALLRAGAD 195
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90130.20892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A382S369_9ZZZZ1.100e-645.45Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A2W5DSY5_9SPHN2.490e-641.07Uncharacterized protein (Fragment) n=1 Tax=Sphingo... [more]
A0A1Q4A9R4_9HYPH5.170e-646.43Uncharacterized protein n=1 Tax=Mesorhizobium sp. ... [more]
UPI0015CF99701.040e-544.00ankyrin repeat domain-containing protein n=1 Tax=W... [more]
A0A067M7S0_9AGAM6.410e-553.49Protein kinase domain-containing protein n=1 Tax=B... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90130contigM-pyrifera_M_contig90130:626..793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size165
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.6519163-UTR-M-pyrifera_M_contig90130:625..6281622816812.6519163-UTR-M-pyrifera_M_contig90130:625..628Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90130 626..628 +
1692278193.2691963-UTR-M-pyrifera_M_contig90130:625..6281692278193.2691963-UTR-M-pyrifera_M_contig90130:625..628Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90130 626..628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.667548-CDS-M-pyrifera_M_contig90130:628..7931622816812.667548-CDS-M-pyrifera_M_contig90130:628..793Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90130 629..793 +
1692278193.2788823-CDS-M-pyrifera_M_contig90130:628..7931692278193.2788823-CDS-M-pyrifera_M_contig90130:628..793Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90130 629..793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90130.20892.1prot_M-pyrifera_M_contig90130.20892.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90130 629..793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90130.20892.1

>prot_M-pyrifera_M_contig90130.20892.1 ID=prot_M-pyrifera_M_contig90130.20892.1|Name=mRNA_M-pyrifera_M_contig90130.20892.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MIKAAEEGNVDAVNRCISGGVDLESKDKNGDTALHRAAFAGKEEVVSALI
KAGAD
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mRNA from alignment at M-pyrifera_M_contig90130:626..793+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90130.20892.1 ID=mRNA_M-pyrifera_M_contig90130.20892.1|Name=mRNA_M-pyrifera_M_contig90130.20892.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=168bp|location=Sequence derived from alignment at M-pyrifera_M_contig90130:626..793+ (Macrocystis pyrifera P11B4 male)
GGGATGATTAAGGCAGCAGAAGAGGGCAATGTGGATGCAGTAAATCGATG
CATATCGGGTGGAGTAGATTTGGAGTCGAAAGACAAGAATGGCGACACAG
CATTACATAGAGCTGCATTTGCTGGCAAAGAAGAGGTGGTATCTGCTCTG
ATTAAAGCAGGTGCTGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90130:626..793+

>mRNA_M-pyrifera_M_contig90130.20892.1 ID=mRNA_M-pyrifera_M_contig90130.20892.1|Name=mRNA_M-pyrifera_M_contig90130.20892.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig90130:626..793+ (Macrocystis pyrifera P11B4 male)
ATGATTAAGGCAGCAGAAGAGGGCAATGTGGATGCAGTAAATCGATGCAT
ATCGGGTGGAGTAGATTTGGAGTCGAAAGACAAGAATGGCGACACAGCAT
TACATAGAGCTGCATTTGCTGGCAAAGAAGAGGTGGTATCTGCTCTGATT
AAAGCAGGTGCTGATATGATTAAGGCAGCAGAAGAGGGCAATGTGGATGC
AGTAAATCGATGCATATCGGGTGGAGTAGATTTGGAGTCGAAAGACAAGA
ATGGCGACACAGCATTACATAGAGCTGCATTTGCTGGCAAAGAAGAGGTG
GTATCTGCTCTGATTAAAGCAGGTGCTGAT
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