mRNA_M-pyrifera_M_contig90129.20891.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90129.20891.1
Unique NamemRNA_M-pyrifera_M_contig90129.20891.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90129.20891.1 vs. uniprot
Match: A0A7S1CRR6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CRR6_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.510e-22
Identity = 50/104 (48.08%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 HANAVSGGDPYVLSAFLTFEKLGVLVRQLVVSEQWVTHVFPRVL-GRVRQGRSLRLYYMLFEEALLANLLEAFFFHDYAVEALGDALVDVVDWVSRRLGELIAR 309
            HANA    DP+V+ A LTF+K+ VL+ +L+  E W   VFP +  G   +   LRLYY  + EA L NLLE F +HDYA EA GDAL+D+VD+  R++  L+ R
Sbjct:   65 HANARGNRDPFVMEAMLTFDKMTVLIHELMAVEAWREFVFPLLRSGGAVERNGLRLYYTFYHEATLVNLLEVFLYHDYACEAAGDALIDLVDYCCRKVSWLVMR 168          
BLAST of mRNA_M-pyrifera_M_contig90129.20891.1 vs. uniprot
Match: A0A482SG05_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SG05_9ARCH)

HSP 1 Score: 85.1 bits (209), Expect = 3.730e-17
Identity = 38/97 (39.18%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    1 HANAVSGGDPYVLSAFLTFEKLGVLVRQLVVSEQWVTHVFPRVLGRVRQGRSLRLYYMLFEEALLANLLEAFFFHDYAVEALGDALVDVVDWVSRRL 291
            H NA+S  D YV+ A LTF K+ VL+  L++ E W   V+P +   +    ++RLY++L+ EA + N+LE F ++ + VEA G+ +++V+D+V+R+L
Sbjct:   73 HHNALSNSDEYVMEAILTFNKIPVLIHDLLLIEAWKESVYPLLKEELSGRNNMRLYFILYHEATVVNMLEIFLYYKHFVEAGGEVMIEVIDYVARKL 169          
BLAST of mRNA_M-pyrifera_M_contig90129.20891.1 vs. uniprot
Match: A0A6S8FW69_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8FW69_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.180e-16
Identity = 39/100 (39.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 HANAVSGGDPYVLSAFLTFEKLGVLVRQLVVSEQWVTHVFPRVLGRVRQGRSLRLYYMLFEEALLANLLEAFFFHDYAVEALGDALVDVVDWVSRRLGEL 300
            H +     D YVL   +T+EKL V+V +L++ E W T++FP +   + Q   ++ Y+ML+ EA L NLLE   ++DYAVEA GD +++++D+  R++  L
Sbjct:   71 HQSVSMSSDNYVLENMVTYEKLPVVVHELIMIEAWRTNLFPLLQEDLAQKCGIKAYHMLYHEATLCNLLEVLLYYDYAVEACGDIVIELIDYTCRQIAWL 170          
BLAST of mRNA_M-pyrifera_M_contig90129.20891.1 vs. uniprot
Match: A0A7S1BIR3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIR3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.230e-16
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    1 HANAVSGGDPYVLSAFLTFEKLGVLVRQLVVSEQWVTHVFPRVLGRVRQGRS-LRLYYMLFEEALLANLLEAFFFHDYAVEALGDALVDVVDWVSRRLGELIARSHR 318
            H  A+   D YV+ A LT+EKL +L+  L+ +E W TH FP +L  +   R+ LR Y+ L+ E  L +LL   F+H  AVEAL    V++VD+ +RR+  L     R
Sbjct:   52 HQCAMRNADEYVVEAILTYEKLPLLITDLLATELWRTHAFPHLLPSLASNRNVLRTYFTLYHECTLVSLLHTLFYHRRAVEALDQLSVELVDYCARRMASLAVPEDR 158          
BLAST of mRNA_M-pyrifera_M_contig90129.20891.1 vs. uniprot
Match: D7FH17_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH17_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.530e-16
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    1 HANAVSGGDPYVLSAFLTFEKLGVLVRQLVVSEQWVTHVFPRVLG--RVRQGR-SLRLYYMLFEEALLANLLEAFFFHDYAVE-ALGDALVDVVDWVSRRLGELIA 306
            H +A++  D YVL A LTF+KLGV+V +L+  E W   V PR+L   R R G+ ++RLY+ L+ EA LANLL+   FH +  E A GD L+++ D+ +R++  LI+
Sbjct:   81 HQSAMARSDEYVLEALLTFDKLGVVVHELLAIEAWKEFVLPRLLETERARSGKCTMRLYFTLYHEATLANLLQVALFHGHICEQAGGDLLMELADYCARKMTMLIS 186          
BLAST of mRNA_M-pyrifera_M_contig90129.20891.1 vs. uniprot
Match: A0A8J2WZ86_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZ86_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.000e-16
Identity = 44/112 (39.29%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    1 HANAVSGGDPYVLSAFLTFEKLGVLVRQLVVSEQWVTHVFPRVLGRVRQG--------RSLRLYYMLFEEALLANLLEAFFFHDYAVEALGDALVDVVDWVSRRLGELIARS 312
            HA+A    D +VL AFLTF+KLG L+  L++ E W   V+P ++  +  G        R++R Y++L+ EA + NLLE   +H +AV A+ DA +D+ D+ +RRL  L +R+
Sbjct:   78 HASARDKSDEFVLEAFLTFDKLGTLIYDLILIETWRERVYPLLVEHLVGGGENEATRSRAMRAYFVLYHEATVVNLLECLCYHAHAVGAVKDASLDLTDYCARRLAALHSRA 189          
BLAST of mRNA_M-pyrifera_M_contig90129.20891.1 vs. uniprot
Match: A0A7S2MU58_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MU58_9EUKA)

HSP 1 Score: 82.8 bits (203), Expect = 3.010e-16
Identity = 38/97 (39.18%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    1 HANAVSGGDPYVLSAFLTFEKLGVLVRQLVVSEQWVTHVFPRVLGRVRQGRSLRLYYMLFEEALLANLLEAFFFHDYAVEALGDALVDVVDWVSRRL 291
            H NA    D +VL AF+  EK+ +L+R+L+ SE W  + +P +   + +  S++ Y +L++E +LANLLEA  FH  A E+ GD ++++VD+  R+L
Sbjct:   60 HVNASQQRDEFVLEAFVLHEKVPLLIRELIASELWKQNAYPLIKDWLAENNSIKGYLLLYQEGVLANLLEALLFHKEACESAGDMIIELVDYCHRKL 156          
BLAST of mRNA_M-pyrifera_M_contig90129.20891.1 vs. uniprot
Match: A0A812SF65_SYMMI (Zmynd10 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SF65_SYMMI)

HSP 1 Score: 81.3 bits (199), Expect = 4.570e-16
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   13 VSGGDPYVLSAFLTFEKLGVLVRQLVVSEQWVTHVFPRVLGRVRQGRSLRLYYMLFEEALLANLLEAFFFHDYAVEALGDALVDVVDWVSRRLGEL 300
            +S  D Y+L + LTF KL VLV  L+  E W  HVFP +   +    S+RLY++L+ EA + NLLE F +H +  E  G+ L+++VD+V+R++  L
Sbjct:    1 MSRSDEYILESVLTFSKLEVLVYDLLTIEAWKEHVFPLLSEPLAGRNSMRLYFILYHEATVINLLEVFLYHKHVCEGGGEKLLELVDYVARKMTRL 96          
BLAST of mRNA_M-pyrifera_M_contig90129.20891.1 vs. uniprot
Match: A0A7S1BJ05_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BJ05_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.530e-16
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    1 HANAVSGGDPYVLSAFLTFEKLGVLVRQLVVSEQWVTHVFPRVLGRVRQGRS-LRLYYMLFEEALLANLLEAFFFHDYAVEALGDALVDVVDWVSRRLGELIARSHR 318
            H  A+   D YV+ A LT+EKL +L+  L+ +E W TH FP +L  +   R+ LR Y+ L+ E  L +LL   F+H  AVEAL    V++VD+ +RR+  L     R
Sbjct:   52 HQCAMRNADEYVVEAILTYEKLPLLITDLLATELWRTHAFPHLLPSLASNRNVLRTYFTLYHECTLVSLLHTLFYHRRAVEALDQLSVELVDYCARRMASLAVPEDR 158          
BLAST of mRNA_M-pyrifera_M_contig90129.20891.1 vs. uniprot
Match: A0A6G0WSL1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSL1_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.400e-15
Identity = 41/103 (39.81%), Postives = 68/103 (66.02%), Query Frame = 1
Query:    1 HANAVSGGDPYVLSAFLTFEKLGVLVRQLVVSEQWVTHVFPRVLGRVRQGRSLRLYYMLFEEALLANLLEAFFFHDYAVEALGD-ALVDVVDWVSRRLGELIA 306
            H +A    D +V+ + LTF+KL VL+  ++V+E W   VFP  L  +    SLR+Y++L+ EA+L NLLE  F+H++ +E+L D  L++V+D+  R++  LI+
Sbjct:   50 HQSAKQKSDNFVVESLLTFKKLDVLIENMLVNELWKEQVFP-TLQDISDTASLRIYFVLYHEAVLCNLLEVAFYHEHVIESLDDETLMEVIDYAMRKVTWLIS 151          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90129.20891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CRR6_9STRA3.510e-2248.08Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A482SG05_9ARCH3.730e-1739.18Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6S8FW69_9STRA1.180e-1639.00Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S1BIR3_9STRA1.230e-1640.19Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
D7FH17_ECTSI1.530e-1644.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J2WZ86_9STRA3.000e-1639.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2MU58_9EUKA3.010e-1639.18Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A812SF65_SYMMI4.570e-1641.67Zmynd10 protein n=1 Tax=Symbiodinium microadriatic... [more]
A0A7S1BJ05_9STRA5.530e-1640.19Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A6G0WSL1_9STRA1.400e-1539.81Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90129contigM-pyrifera_M_contig90129:2..322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.3e-14
Seed eggNOG ortholog112098.XP_008614309.1
Preferred nameZMYND10
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003008,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007600,GO:0007605,GO:0008150,GO:0008270,GO:0009987,GO:0010638,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0019230,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0031344,GO:0031346,GO:0032501,GO:0033043,GO:0034451,GO:0034622,GO:0035082,GO:0036158,GO:0036159,GO:0036477,GO:0040011,GO:0043025,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044458,GO:0044459,GO:0044464,GO:0044782,GO:0045177,GO:0045724,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0048870,GO:0050789,GO:0050794,GO:0050877,GO:0050884,GO:0050905,GO:0050954,GO:0051128,GO:0051130,GO:0051179,GO:0051674,GO:0060271,GO:0060491,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0071944,GO:0097458,GO:0097722,GO:0098590,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:1902017,GO:1902115,GO:1902117,GO:1905503,GO:1905505
EggNOG free text desc.positive regulation of motile cilium assembly
EggNOG OGs28JQ5@1,2QS3F@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.6168218-CDS-M-pyrifera_M_contig90129:1..3221622816812.6168218-CDS-M-pyrifera_M_contig90129:1..322Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90129 2..322 +
1692278193.247634-CDS-M-pyrifera_M_contig90129:1..3221692278193.247634-CDS-M-pyrifera_M_contig90129:1..322Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90129 2..322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90129.20891.1prot_M-pyrifera_M_contig90129.20891.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90129 2..322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90129.20891.1

>prot_M-pyrifera_M_contig90129.20891.1 ID=prot_M-pyrifera_M_contig90129.20891.1|Name=mRNA_M-pyrifera_M_contig90129.20891.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
HANAVSGGDPYVLSAFLTFEKLGVLVRQLVVSEQWVTHVFPRVLGRVRQG
RSLRLYYMLFEEALLANLLEAFFFHDYAVEALGDALVDVVDWVSRRLGEL
IARSHRG
back to top

mRNA from alignment at M-pyrifera_M_contig90129:2..322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90129.20891.1 ID=mRNA_M-pyrifera_M_contig90129.20891.1|Name=mRNA_M-pyrifera_M_contig90129.20891.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig90129:2..322+ (Macrocystis pyrifera P11B4 male)
CACGCGAACGCGGTGAGCGGTGGGGACCCGTACGTGTTGAGTGCGTTTTT GACGTTTGAGAAGCTGGGTGTGCTGGTGCGGCAGCTGGTGGTGTCGGAGC AGTGGGTGACGCACGTGTTCCCGCGGGTGCTGGGCCGGGTGCGGCAAGGG CGGTCGCTGCGGCTCTACTACATGCTCTTCGAGGAGGCGCTGCTGGCCAA CCTGCTCGAGGCATTCTTCTTCCACGACTATGCCGTCGAGGCTCTCGGAG ATGCGCTGGTCGATGTGGTGGACTGGGTGAGCCGCCGCCTCGGGGAGCTC ATCGCTCGGTCGCACCGCGGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig90129:2..322+

>mRNA_M-pyrifera_M_contig90129.20891.1 ID=mRNA_M-pyrifera_M_contig90129.20891.1|Name=mRNA_M-pyrifera_M_contig90129.20891.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig90129:2..322+ (Macrocystis pyrifera P11B4 male)
CACGCGAACGCGGTGAGCGGTGGGGACCCGTACGTGTTGAGTGCGTTTTT
GACGTTTGAGAAGCTGGGTGTGCTGGTGCGGCAGCTGGTGGTGTCGGAGC
AGTGGGTGACGCACGTGTTCCCGCGGGTGCTGGGCCGGGTGCGGCAAGGG
CGGTCGCTGCGGCTCTACTACATGCTCTTCGAGGAGGCGCTGCTGGCCAA
CCTGCTCGAGGCATTCTTCTTCCACGACTATGCCGTCGAGGCTCTCGGAG
ATGCGCTGGTCGATGTGGTGGACTGGGTGAGCCGCCGCCTCGGGGAGCTC
ATCGCTCGGTCGCACCGCGGGCACGCGAACGCGGTGAGCGGTGGGGACCC
GTACGTGTTGAGTGCGTTTTTGACGTTTGAGAAGCTGGGTGTGCTGGTGC
GGCAGCTGGTGGTGTCGGAGCAGTGGGTGACGCACGTGTTCCCGCGGGTG
CTGGGCCGGGTGCGGCAAGGGCGGTCGCTGCGGCTCTACTACATGCTCTT
CGAGGAGGCGCTGCTGGCCAACCTGCTCGAGGCATTCTTCTTCCACGACT
ATGCCGTCGAGGCTCTCGGAGATGCGCTGGTCGATGTGGTGGACTGGGTG
AGCCGCCGCCTCGGGGAGCTCATCGCTCGGTCGCACCGCGGG
back to top