mRNA_M-pyrifera_M_contig109975.2088.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109975.2088.1
Unique NamemRNA_M-pyrifera_M_contig109975.2088.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109975.2088.1 vs. uniprot
Match: G0QIZ4_ICHMG (Palmitoyltransferase n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QIZ4_ICHMG)

HSP 1 Score: 67.0 bits (162), Expect = 4.610e-12
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 CEKCGVEKGKGVVHCEFDDLCIQGYDHHCPWFGGAIGDGNLLYF 132
            C+KC + K +G+ HC   D+CIQ YDHHCPW G  IG GN+ +F
Sbjct:  164 CDKCQIIKNQGIYHCFECDICIQDYDHHCPWTGKCIGKGNMFFF 207
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BLAST of mRNA_M-pyrifera_M_contig109975.2088.1 vs. uniprot
Match: A0C0P7_PARTE (Palmitoyltransferase n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0C0P7_PARTE)

HSP 1 Score: 63.2 bits (152), Expect = 7.700e-11
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 CEKCGVEKGKGVVHCEFDDLCIQGYDHHCPWFGGAIGDGNLLYF 132
            C+ C ++K  G  HC   D+C++GYDHHCPW G  IG+GN++ F
Sbjct:  125 CQPCKLKKELGTHHCYECDICVRGYDHHCPWVGKCIGEGNIIEF 168
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BLAST of mRNA_M-pyrifera_M_contig109975.2088.1 vs. uniprot
Match: A0A7S1S8V0_ALECA (Palmitoyltransferase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1S8V0_ALECA)

HSP 1 Score: 62.0 bits (149), Expect = 7.940e-11
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 CEKCGVEKGKGVVHCEFDDLCIQGYDHHCPWFGGAIGDGNL--LYFFLSIALIAASF 165
            C  C + + +G +HCEF  +C++G+DHHCPW G  IG  NL   Y FL  +L + ++
Sbjct:   69 CSACLIMQPRGAMHCEFCHVCVEGWDHHCPWMGKCIGKSNLNEFYTFLCTSLTSLAY 125
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BLAST of mRNA_M-pyrifera_M_contig109975.2088.1 vs. uniprot
Match: A0A7S2ISR3_9DINO (Palmitoyltransferase n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2ISR3_9DINO)

HSP 1 Score: 61.6 bits (148), Expect = 9.660e-11
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 CEKCGVEKGKGVVHCEFDDLCIQGYDHHCPWFGGAIGDGNL--LYFFLSIALIAASF 165
            C  C + + +G +HCEF  +C++G+DHHCPW G  IG  NL   Y FL  +L + ++
Sbjct:   62 CSACLIMQPRGALHCEFCHVCVEGWDHHCPWMGKCIGKSNLNAFYAFLCTSLSSLAY 118
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BLAST of mRNA_M-pyrifera_M_contig109975.2088.1 vs. uniprot
Match: I7MB77_TETTS (Palmitoyltransferase n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MB77_TETTS)

HSP 1 Score: 63.2 bits (152), Expect = 1.310e-10
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 CEKCGVEKGKGVVHCEFDDLCIQGYDHHCPWFGGAIGDGNLLYFFLSI 144
            C+ C + + KG  HC   D+CIQ YDHHCPW G  IG GNL  F++ +
Sbjct:  162 CKPCQILRPKGTTHCYDCDVCIQEYDHHCPWTGKCIGHGNLQVFYIFV 209
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BLAST of mRNA_M-pyrifera_M_contig109975.2088.1 vs. uniprot
Match: A0BW25_PARTE (Palmitoyltransferase n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BW25_PARTE)

HSP 1 Score: 62.0 bits (149), Expect = 2.300e-10
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 CEKCGVEKGKGVVHCEFDDLCIQGYDHHCPWFGGAIGDGNLLYF 132
            C+ C +EK  G  HC   D+C++GYDHHCPW G  IG GN+  F
Sbjct:  130 CQPCKLEKEYGTYHCYQCDICVKGYDHHCPWVGKCIGVGNIKEF 173
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BLAST of mRNA_M-pyrifera_M_contig109975.2088.1 vs. uniprot
Match: A0A1R2BM03_9CILI (Palmitoyltransferase n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BM03_9CILI)

HSP 1 Score: 58.5 bits (140), Expect = 7.190e-10
Identity = 25/55 (45.45%), Postives = 31/55 (56.36%), Query Frame = 1 
Query:    1 CEKCGVEKGKGVVHCEFDDLCIQGYDHHCPWFGGAIGDGNLLYFFLSIALIAASF 165
            C  C V K     HC+   +CIQ YDHHCPW    IG GN+ YF+  +A +  SF
Sbjct:   23 CSTCLVYKRPHTEHCDECGVCIQEYDHHCPWTSKCIGKGNIKYFYCFLAGLLISF 77
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BLAST of mRNA_M-pyrifera_M_contig109975.2088.1 vs. uniprot
Match: A0A7S0XE05_9STRA (Palmitoyltransferase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XE05_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 8.940e-10
Identity = 23/44 (52.27%), Postives = 27/44 (61.36%), Query Frame = 1 
Query:    1 CEKCGVEKGKGVVHCEFDDLCIQGYDHHCPWFGGAIGDGNLLYF 132
            C+ C   +  G VHC    +CI GYDHHCPW G  IG GN+ YF
Sbjct:  150 CDHCESFRPPGTVHCSTCQVCIAGYDHHCPWTGKCIGYGNIFYF 193
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BLAST of mRNA_M-pyrifera_M_contig109975.2088.1 vs. uniprot
Match: I7MHW9_TETTS (Palmitoyltransferase n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MHW9_TETTS)

HSP 1 Score: 61.2 bits (147), Expect = 9.050e-10
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    1 CEKCGVEKGKGVVHCEFDDLCIQGYDHHCPWFGGAIGDGNLLYFFLSIAL 150
            C+KC + K K   HC+  D+C++GYDHHCPW    I  GN+  F + IA+
Sbjct:  163 CKKCDILKDKSTEHCDSCDVCVRGYDHHCPWSSKCIAKGNIKPFNVFIAM 212
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BLAST of mRNA_M-pyrifera_M_contig109975.2088.1 vs. uniprot
Match: K3WQW4_GLOUD (Palmitoyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQW4_GLOUD)

HSP 1 Score: 60.8 bits (146), Expect = 1.870e-9
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 CEKCGVEKGKGVVHCEFDDLCIQGYDHHCPWFGGAIGDGNLLYFFLSIALIAASF 165
            C+ C   + +G +HC    +CI+GYDHHCPW G  +G GN+ YF+  +  +  +F
Sbjct:  266 CDHCESYRPQGALHCMDCRVCIEGYDHHCPWTGKCVGRGNVRYFYAWLFFLVLAF 320
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109975.2088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G0QIZ4_ICHMG4.610e-1254.55Palmitoyltransferase n=1 Tax=Ichthyophthirius mult... [more]
A0C0P7_PARTE7.700e-1150.00Palmitoyltransferase n=1 Tax=Paramecium tetraureli... [more]
A0A7S1S8V0_ALECA7.940e-1142.11Palmitoyltransferase n=1 Tax=Alexandrium catenella... [more]
A0A7S2ISR3_9DINO9.660e-1142.11Palmitoyltransferase n=1 Tax=Alexandrium andersoni... [more]
I7MB77_TETTS1.310e-1050.00Palmitoyltransferase n=1 Tax=Tetrahymena thermophi... [more]
A0BW25_PARTE2.300e-1052.27Palmitoyltransferase n=1 Tax=Paramecium tetraureli... [more]
A0A1R2BM03_9CILI7.190e-1045.45Palmitoyltransferase n=1 Tax=Stentor coeruleus Tax... [more]
A0A7S0XE05_9STRA8.940e-1052.27Palmitoyltransferase n=1 Tax=Chromulina nebulosa T... [more]
I7MHW9_TETTS9.050e-1046.00Palmitoyltransferase n=1 Tax=Tetrahymena thermophi... [more]
K3WQW4_GLOUD1.870e-940.00Palmitoyltransferase n=1 Tax=Globisporangium ultim... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109975contigM-pyrifera_M_contig109975:92..256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue4.1e-09
Seed eggNOG ortholog5932.XP_004040118.1
KEGG koko:K20029
KEGG TC9.B.37.2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Pfam:zf-DHHC
EggNOG OGs3ZENA@5878,COG5273@1,KOG0509@2759
EC2.3.1.225
COG Functional cat.S
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.4177496-CDS-M-pyrifera_M_contig109975:91..2561622815610.4177496-CDS-M-pyrifera_M_contig109975:91..256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109975 92..256 +
1692277486.3164954-CDS-M-pyrifera_M_contig109975:91..2561692277486.3164954-CDS-M-pyrifera_M_contig109975:91..256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109975 92..256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109975.2088.1prot_M-pyrifera_M_contig109975.2088.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109975 92..256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109975.2088.1

>prot_M-pyrifera_M_contig109975.2088.1 ID=prot_M-pyrifera_M_contig109975.2088.1|Name=mRNA_M-pyrifera_M_contig109975.2088.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
CEKCGVEKGKGVVHCEFDDLCIQGYDHHCPWFGGAIGDGNLLYFFLSIAL
IAASF
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mRNA from alignment at M-pyrifera_M_contig109975:92..256+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109975.2088.1 ID=mRNA_M-pyrifera_M_contig109975.2088.1|Name=mRNA_M-pyrifera_M_contig109975.2088.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig109975:92..256+ (Macrocystis pyrifera P11B4 male)
TGTGAGAAATGTGGGGTGGAGAAGGGAAAAGGTGTTGTGCATTGCGAGTT
TGACGACTTGTGTATCCAAGGATATGACCATCATTGCCCATGGTTTGGAG
GTGCCATTGGTGATGGCAATTTGCTCTATTTCTTTCTCTCTATTGCTCTA
ATCGCTGCTTCATTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109975:92..256+

>mRNA_M-pyrifera_M_contig109975.2088.1 ID=mRNA_M-pyrifera_M_contig109975.2088.1|Name=mRNA_M-pyrifera_M_contig109975.2088.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig109975:92..256+ (Macrocystis pyrifera P11B4 male)
TGTGAGAAATGTGGGGTGGAGAAGGGAAAAGGTGTTGTGCATTGCGAGTT
TGACGACTTGTGTATCCAAGGATATGACCATCATTGCCCATGGTTTGGAG
GTGCCATTGGTGATGGCAATTTGCTCTATTTCTTTCTCTCTATTGCTCTA
ATCGCTGCTTCATTCTGTGAGAAATGTGGGGTGGAGAAGGGAAAAGGTGT
TGTGCATTGCGAGTTTGACGACTTGTGTATCCAAGGATATGACCATCATT
GCCCATGGTTTGGAGGTGCCATTGGTGATGGCAATTTGCTCTATTTCTTT
CTCTCTATTGCTCTAATCGCTGCTTCATTC
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