mRNA_M-pyrifera_M_contig90065.20878.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90065.20878.1
Unique NamemRNA_M-pyrifera_M_contig90065.20878.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90065.20878.1 vs. uniprot
Match: A0A5A8C643_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C643_CAFRO)

HSP 1 Score: 166 bits (421), Expect = 5.730e-47
Identity = 87/157 (55.41%), Postives = 108/157 (68.79%), Query Frame = 1
Query:   22 AEHLVREV---LEKRCGFAPWIGPSQAPTPSHVAGLYVRGCAQPGTVLALFPGAVFEPSMRLRASDAGHLADPRKSRLLIPRFDGAVLDVHAYSPPTPNPFAVGHLARHPPPGISPNALRIQIDFPGPSHDASTP-PFPPHLLPYVPNAFGAALSAA 480
            AE  VR+V   L +R GFAPWIGP+QAPTP H AGL+++G A PGTV+AL+PGA F   MR+RASD GH  DPR  R ++PR DGA+LDV AY P  PNPFAV   ARHPPP + PN  RIQ+DF   S + +     P +L P++P  +GA +S A
Sbjct:  146 AETAVRDVKDSLLRRVGFAPWIGPTQAPTPEHSAGLFLKGAALPGTVVALYPGATFAIDMRMRASDVGHWMDPRVKRTIVPRHDGAMLDVDAYRPERPNPFAVAQHARHPPPDVRPNCARIQVDFVLDSRNTTRLLGLPDYLSPFLPVDWGAKVSQA 302          
BLAST of mRNA_M-pyrifera_M_contig90065.20878.1 vs. uniprot
Match: A0A812QII4_9DINO (Ankrd52 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812QII4_9DINO)

HSP 1 Score: 154 bits (389), Expect = 1.800e-40
Identity = 76/169 (44.97%), Postives = 107/169 (63.31%), Query Frame = 1
Query:    4 GEERRAAEHLVREVLEKRCGFAPWIGPSQAPTPSHVAGLYVRGCAQPGTVLALFPGAVFEPSMRLRASDAGHLADPRKSRLLIPRFDGAVLDVHAYSPPTPNPFAVGHLARHPPPGISPNALRIQIDFPGPSHDASTP----------PFPPHLLPYVPNAFGAALSAA 480
            GE+ +AA+   R+++  R GFA W+GP+QAPTPSH AG+++RG A PG V+ +FPGAV+   MR +A D GH A+P   R+++PRFD  +LDVH       NP AV H ARHPP G++PN +R+Q D+    + A              FP HL PY+PN +G+ ++ A
Sbjct:  605 GEQEKAAKLQQRQLMLARTGFALWLGPTQAPTPSHSAGVFLRGRALPGQVVGVFPGAVYNSEMRQKAVDFGHFANPAVQRIILPRFDDTILDVHGAGADVYNPLAVAHHARHPPAGVTPNVMRLQYDYVDDENSACLHGLVADHYGHLDFPRHLRPYIPNKWGSLVTGA 773          
BLAST of mRNA_M-pyrifera_M_contig90065.20878.1 vs. uniprot
Match: A0A7S1C2T4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2T4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.520e-24
Identity = 47/93 (50.54%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    7 EERRAAEHLVREVLEKRCGFAPWIGPSQAPTPSHVAGLYVRGCAQPGTVLALFPGAVFEPSMRLRASDAGHLADPRKSRLLIPRFDGAVLDVH 285
            E+R AA  L+ E L  R G++ W+GPSQA TP + AGLY+RG A PGTV+A++PG  +   M L+A D  HLA+P   R  + RFDG ++DVH
Sbjct:   51 EDRLAASRLMSEYLGLRVGYSLWVGPSQAQTPQNTAGLYLRGYAPPGTVVAMYPGRAYSSEMMLKAKDFAHLANPDVPRHFVVRFDGTLIDVH 143          
BLAST of mRNA_M-pyrifera_M_contig90065.20878.1 vs. uniprot
Match: A0A8K1CCH4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCH4_PYTOL)

HSP 1 Score: 63.5 bits (153), Expect = 5.850e-9
Identity = 41/141 (29.08%), Postives = 66/141 (46.81%), Query Frame = 1
Query:   37 REVLEKRCGFAPWIGPSQAPTPSHVAGLYVRGCAQPGTVLALFPGAVFEPSMRLRASDAGHLADPRKSRLLIPRFDGAVLDVHAYSPPTPNPFAVGHLARHPPPGISPNALRIQIDFPGPSHDASTPPFPPHLLPYVPNAF 459
            R+++ +  G++  +  S  P      G+ ++G    G+++ALFPGAV+ P    +     +L +   +     RFD  ++D    +P   NP AV H   HPP G SPN +    DFP        P   P    ++PN+F
Sbjct:  105 RDIVRELLGYSLKVEASSVPNAGE--GVKIQGRLPIGSLVALFPGAVYLPEHFKKPQ---YLREVSNNVYARARFDSIIIDAKNETPSPRNPLAVAHKINHPPAGSSPNVMPFSYDFP-----PEEPFTDPDYQQFIPNSF 235          
BLAST of mRNA_M-pyrifera_M_contig90065.20878.1 vs. uniprot
Match: A0A1D1ZP11_AUXPR (Uncharacterized protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZP11_AUXPR)

HSP 1 Score: 58.5 bits (140), Expect = 4.160e-7
Identity = 49/154 (31.82%), Postives = 63/154 (40.91%), Query Frame = 1
Query:   64 FAPWIGPSQAPTPSHVAGLYVRGCAQPGTVLALFPGAVFEPSMRLRASDAGHLADPRKSRLLIPRFDGAVLDVHAYS---------PPTP---------------NPFAVGHLARHPPPGISPNALRIQIDFPGPSHDASTPPFPPHLLPYVPN 453
            FA  I PS     S   G+++RG A  G ++AL+PG  + P +  RA   G+    R +  L+ RFDG  LD   +          PP P               N  A GHL  HPP G  PN      D+        TP    HL  Y+PN
Sbjct:  150 FALDIAPSSIQHASAGRGVWLRGHAATGQIVALYPGVAYRP-LHHRAIP-GYPMVGRDNEFLLSRFDGVALDGKPWGLGAALERRWPPLPPHNLAEEALGCLEGVNNLAAGHLVNHPPAGTLPNVAVASFDW-------HTPGSQSHLRAYIPN 294          
BLAST of mRNA_M-pyrifera_M_contig90065.20878.1 vs. uniprot
Match: A0A7S1D256_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D256_CYCTE)

HSP 1 Score: 51.2 bits (121), Expect = 2.010e-5
Identity = 36/99 (36.36%), Postives = 51/99 (51.52%), Query Frame = 1
Query:  100 PSHVAGLYVRGCAQPGTVLALFPGAVFEPSMRLRASDAG-HLADPRKSRLLIPRFDGAVLDVHAYSPPT--PNPFAVGHLARHPPPGISPNALRIQIDF 387
            P+   G+Y+ G A  G+V+A FPG  +     +  +D   H      +  L  R D  +LD  A SP T   NP+A+GH+A HPPP  + N   I ID+
Sbjct:    1 PNAGRGVYLDGRALGGSVVAFFPGDTWARDFLVDITDELLHYISHDPNHQLRLRGDEVLLDCRA-SPYTVLTNPWAIGHIANHPPPNTTVNCRSIPIDY 98          
BLAST of mRNA_M-pyrifera_M_contig90065.20878.1 vs. uniprot
Match: D8UFA4_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UFA4_VOLCA)

HSP 1 Score: 52.8 bits (125), Expect = 4.710e-5
Identity = 22/53 (41.51%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   22 AEHLVREVLEKRCGFAPWIGPSQAPTPSHVAGLYVRGCAQPGTVLALFPGAVF 180
            ++  V E L++R GF   +GPS  P P    GL++RG A+PG ++A+FPG ++
Sbjct:  160 SQQQVAEALQRRIGFRLELGPSSVPHPDSGTGLFLRGEARPGAIVAIFPGVLY 212          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90065.20878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A5A8C643_CAFRO5.730e-4755.41Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A812QII4_9DINO1.800e-4044.97Ankrd52 protein n=1 Tax=Symbiodinium sp. KB8 TaxID... [more]
A0A7S1C2T4_9STRA1.520e-2450.54Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8K1CCH4_PYTOL5.850e-929.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1D1ZP11_AUXPR4.160e-731.82Uncharacterized protein n=1 Tax=Auxenochlorella pr... [more]
A0A7S1D256_CYCTE2.010e-536.36Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
D8UFA4_VOLCA4.710e-541.51Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90065contigM-pyrifera_M_contig90065:55..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue9.1e-09
Seed eggNOG ortholog2880.D7FT86
Hectar predicted targeting categoryother localisation
EggNOG OGs28PNT@1,2QWAW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.151937-CDS-M-pyrifera_M_contig90065:54..5341622816812.151937-CDS-M-pyrifera_M_contig90065:54..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90065 55..534 -
1692278193.0056593-CDS-M-pyrifera_M_contig90065:54..5341692278193.0056593-CDS-M-pyrifera_M_contig90065:54..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90065 55..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90065.20878.1prot_M-pyrifera_M_contig90065.20878.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90065 55..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90065.20878.1

>prot_M-pyrifera_M_contig90065.20878.1 ID=prot_M-pyrifera_M_contig90065.20878.1|Name=mRNA_M-pyrifera_M_contig90065.20878.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
VGEERRAAEHLVREVLEKRCGFAPWIGPSQAPTPSHVAGLYVRGCAQPGT
VLALFPGAVFEPSMRLRASDAGHLADPRKSRLLIPRFDGAVLDVHAYSPP
TPNPFAVGHLARHPPPGISPNALRIQIDFPGPSHDASTPPFPPHLLPYVP
NAFGAALSAA
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mRNA from alignment at M-pyrifera_M_contig90065:55..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90065.20878.1 ID=mRNA_M-pyrifera_M_contig90065.20878.1|Name=mRNA_M-pyrifera_M_contig90065.20878.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig90065:55..534- (Macrocystis pyrifera P11B4 male)
GTGGGAGAAGAGCGGCGGGCTGCCGAGCATTTGGTGCGGGAGGTGTTGGA GAAGCGGTGTGGATTTGCGCCCTGGATTGGACCTTCCCAGGCCCCCACGC CCTCGCACGTCGCAGGCCTCTATGTGCGGGGCTGCGCACAGCCCGGAACC GTGCTGGCTCTATTTCCTGGGGCTGTGTTCGAGCCCTCCATGCGACTGCG GGCGAGTGATGCTGGTCATTTGGCTGATCCTCGCAAATCGCGACTGCTCA TTCCTCGGTTCGACGGGGCAGTGTTGGACGTGCATGCGTACAGTCCTCCA ACCCCCAACCCGTTTGCAGTGGGTCATTTGGCCAGACACCCACCTCCGGG AATCTCTCCCAACGCTCTTCGGATCCAGATCGATTTCCCAGGCCCTTCCC ACGACGCCTCCACCCCACCCTTCCCCCCCCACCTCCTGCCTTACGTCCCA AACGCCTTCGGAGCCGCCCTCTCCGCCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90065:55..534-

>mRNA_M-pyrifera_M_contig90065.20878.1 ID=mRNA_M-pyrifera_M_contig90065.20878.1|Name=mRNA_M-pyrifera_M_contig90065.20878.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig90065:55..534- (Macrocystis pyrifera P11B4 male)
GTGGGAGAAGAGCGGCGGGCTGCCGAGCATTTGGTGCGGGAGGTGTTGGA
GAAGCGGTGTGGATTTGCGCCCTGGATTGGACCTTCCCAGGCCCCCACGC
CCTCGCACGTCGCAGGCCTCTATGTGCGGGGCTGCGCACAGCCCGGAACC
GTGCTGGCTCTATTTCCTGGGGCTGTGTTCGAGCCCTCCATGCGACTGCG
GGCGAGTGATGCTGGTCATTTGGCTGATCCTCGCAAATCGCGACTGCTCA
TTCCTCGGTTCGACGGGGCAGTGTTGGACGTGCATGCGTACAGTCCTCCA
ACCCCCAACCCGTTTGCAGTGGGTCATTTGGCCAGACACCCACCTCCGGG
AATCTCTCCCAACGCTCTTCGGATCCAGATCGATTTCCCAGGCCCTTCCC
ACGACGCCTCCACCCCACCCTTCCCCCCCCACCTCCTGCCTTACGTCCCA
AACGCCTTCGGAGCCGCCCTCTCCGCCGCCGTGGGAGAAGAGCGGCGGGC
TGCCGAGCATTTGGTGCGGGAGGTGTTGGAGAAGCGGTGTGGATTTGCGC
CCTGGATTGGACCTTCCCAGGCCCCCACGCCCTCGCACGTCGCAGGCCTC
TATGTGCGGGGCTGCGCACAGCCCGGAACCGTGCTGGCTCTATTTCCTGG
GGCTGTGTTCGAGCCCTCCATGCGACTGCGGGCGAGTGATGCTGGTCATT
TGGCTGATCCTCGCAAATCGCGACTGCTCATTCCTCGGTTCGACGGGGCA
GTGTTGGACGTGCATGCGTACAGTCCTCCAACCCCCAACCCGTTTGCAGT
GGGTCATTTGGCCAGACACCCACCTCCGGGAATCTCTCCCAACGCTCTTC
GGATCCAGATCGATTTCCCAGGCCCTTCCCACGACGCCTCCACCCCACCC
TTCCCCCCCCACCTCCTGCCTTACGTCCCAAACGCCTTCGGAGCCGCCCT
CTCCGCCGCC
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