mRNA_M-pyrifera_M_contig90053.20873.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90053.20873.1
Unique NamemRNA_M-pyrifera_M_contig90053.20873.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90053.20873.1 vs. uniprot
Match: A0A4Y0BF17_ANOFN (TMEM131_like_N domain-containing protein n=1 Tax=Anopheles funestus TaxID=62324 RepID=A0A4Y0BF17_ANOFN)

HSP 1 Score: 80.9 bits (198), Expect = 1.520e-15
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:    1 SVEVREIAGSNAAFSVAGFSPKALRVGDSMRVSVIVIPTTMGAVQDEMVVRTSVGELRVPLEATGIKNPYQVKPIDGGVQLRGSRFSPLVALYNPHDAPLQVLEAYST 324
            SV +  I+GS A FS + F  K +  G +   +V+ +P  +GA    ++V TS G LR P++  GI+ PY+++P+ G      +  SP + LYNPHD PLQ++E YS+
Sbjct:  150 SVYLGSISGSTAEFSSSYFKEKVIPPGGNTSFNVVFLPRKLGAADGSLLVHTSFGMLRYPVQGEGIECPYRLRPLVGLQAPLNATLSPEITLYNPHDTPLQIVEVYSS 257
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BLAST of mRNA_M-pyrifera_M_contig90053.20873.1 vs. uniprot
Match: A0A4Y0BGS7_ANOFN (Uncharacterized protein n=1 Tax=Anopheles funestus TaxID=62324 RepID=A0A4Y0BGS7_ANOFN)

HSP 1 Score: 80.9 bits (198), Expect = 1.580e-15
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:    1 SVEVREIAGSNAAFSVAGFSPKALRVGDSMRVSVIVIPTTMGAVQDEMVVRTSVGELRVPLEATGIKNPYQVKPIDGGVQLRGSRFSPLVALYNPHDAPLQVLEAYST 324
            SV +  I+GS A FS + F  K +  G +   +V+ +P  +GA    ++V TS G LR P++  GI+ PY+++P+ G      +  SP + LYNPHD PLQ++E YS+
Sbjct:  150 SVYLGSISGSTAEFSSSYFKEKVIPPGGNTSFNVVFLPRKLGAADGSLLVHTSFGMLRYPVQGEGIECPYRLRPLVGLQAPLNATLSPEITLYNPHDTPLQIVEVYSS 257
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BLAST of mRNA_M-pyrifera_M_contig90053.20873.1 vs. uniprot
Match: A0A182JU68_9DIPT (Uncharacterized protein n=1 Tax=Anopheles christyi TaxID=43041 RepID=A0A182JU68_9DIPT)

HSP 1 Score: 76.3 bits (186), Expect = 6.600e-14
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:    1 SVEVREIAGSNAAFSVAGFSPKALRVGDSMRVSVIVIPTTMGAVQDEMVVRTSVGELRVPLEATGIKNPYQVKPIDGGVQLRGSRFSPLVALYNPHDAPLQVLEAYST 324
            SV +  I+GS A FS + F  K +    +   SV+ +P  +G     ++V TS G LR P++  GI+ PY+++P+ G      +  SP + LYNPHD PLQ++E YS+
Sbjct:  151 SVYLGSISGSLAEFSSSYFKEKMIPPSGNTTFSVVFLPRKLGPADGSLLVHTSFGMLRYPVQGEGIECPYRLRPLVGLQAPLNATLSPEITLYNPHDTPLQIVEVYSS 258
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BLAST of mRNA_M-pyrifera_M_contig90053.20873.1 vs. uniprot
Match: L8HH11_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HH11_ACACA)

HSP 1 Score: 65.1 bits (157), Expect = 5.450e-10
Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:   94 VSVIVIPTTMGAVQDEMVVRTSVGELRVPLEATGIKNPYQVKPIDGGVQLRGSRFSPLVALYNPHDAPLQVLEAYST 324
            VS++ +P T+G V++++VV+TSVG L   +   GI NPY+++P  G        + P + +YNPHD PL V E +++
Sbjct:  280 VSIVFLPRTVGPVENQLVVQTSVGHLVYQVYGQGILNPYRLQPFVGAKVPADVTYRPPIEIYNPHDTPLHVTEIFTS 356
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BLAST of mRNA_M-pyrifera_M_contig90053.20873.1 vs. uniprot
Match: A0A7S2SQH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQH7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.870e-7
Identity = 29/91 (31.87%), Postives = 51/91 (56.04%), Query Frame = 1 
Query:   40 FSVAGFSPKALRVGDSMRVSVIVIPTTMGAVQDEMVVRTSVGELRVPLEATGIKNPYQVKPIDGGVQLRGSRFSPLVALYNPHDAPLQVLE 312
            F  A F P+ L+ G+   V +I +P  +G V+  + V TS G++R P++A  +KNPY++    G     G  ++  + ++NP +  L VL+
Sbjct:    6 FHPAVFKPQVLQPGERTSVQIIYLPRYVGQVESSITVFTSAGDIRCPIDAFAVKNPYRLHAFVGTKLPLGVLYTRPIIIHNPFNEVLHVLD 96
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BLAST of mRNA_M-pyrifera_M_contig90053.20873.1 vs. uniprot
Match: A0A1W0WFV9_HYPDU (Chordin n=2 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WFV9_HYPDU)

HSP 1 Score: 53.5 bits (127), Expect = 6.210e-6
Identity = 26/76 (34.21%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:   91 RVSVIVIPTTMGAVQDEMVVRTSVGELRVPLEATGIKNPYQVKPIDGGVQLRGSRFSPLVALYNPHDAPLQVLEAY 318
            RV V ++P  MGA    + V TS+G +R+P++A    +P+++ PI+      GS F   + +YNP  + LQ+++ Y
Sbjct: 1118 RVRVALVPRLMGAFGGVITVFTSLGRMRIPVQAQVAPSPFRISPIEHPRLPMGSTFEREIVVYNPFGSALQIVQVY 1193
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90053.20873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A4Y0BF17_ANOFN1.520e-1538.89TMEM131_like_N domain-containing protein n=1 Tax=A... [more]
A0A4Y0BGS7_ANOFN1.580e-1538.89Uncharacterized protein n=1 Tax=Anopheles funestus... [more]
A0A182JU68_9DIPT6.600e-1437.96Uncharacterized protein n=1 Tax=Anopheles christyi... [more]
L8HH11_ACACA5.450e-1038.96Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A7S2SQH7_9STRA1.870e-731.87Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A1W0WFV9_HYPDU6.210e-634.21Chordin n=2 Tax=Hypsibius dujardini TaxID=232323 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90053contigM-pyrifera_M_contig90053:407..730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score74.3
Seed ortholog evalue3.8e-11
Seed eggNOG ortholog7165.AGAP008098-PA
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0016020
EggNOG free text desc.Transmembrane protein 131-like
EggNOG OGs38FI0@33154,3BAE7@33208,3CWGQ@33213,3SH0M@50557,41X8D@6656,450EM@7147,45GTK@7148,KOG3620@1,KOG3620@2759
COG Functional cat.S
Best tax levelNematocera
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816811.9807184-CDS-M-pyrifera_M_contig90053:406..7301622816811.9807184-CDS-M-pyrifera_M_contig90053:406..730Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90053 407..730 +
1692278192.9240563-CDS-M-pyrifera_M_contig90053:406..7301692278192.9240563-CDS-M-pyrifera_M_contig90053:406..730Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90053 407..730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90053.20873.1prot_M-pyrifera_M_contig90053.20873.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90053 407..730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90053.20873.1

>prot_M-pyrifera_M_contig90053.20873.1 ID=prot_M-pyrifera_M_contig90053.20873.1|Name=mRNA_M-pyrifera_M_contig90053.20873.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
SVEVREIAGSNAAFSVAGFSPKALRVGDSMRVSVIVIPTTMGAVQDEMVV
RTSVGELRVPLEATGIKNPYQVKPIDGGVQLRGSRFSPLVALYNPHDAPL
QVLEAYST
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mRNA from alignment at M-pyrifera_M_contig90053:407..730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90053.20873.1 ID=mRNA_M-pyrifera_M_contig90053.20873.1|Name=mRNA_M-pyrifera_M_contig90053.20873.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig90053:407..730+ (Macrocystis pyrifera P11B4 male)
TCGGTGGAGGTGCGGGAGATTGCGGGTTCGAATGCGGCGTTTTCCGTGGC
TGGGTTTTCTCCAAAGGCGCTTCGCGTGGGAGATTCGATGCGTGTGAGCG
TGATCGTGATCCCCACCACCATGGGGGCCGTGCAGGACGAAATGGTGGTG
CGAACGAGCGTGGGGGAGCTGCGTGTGCCGCTGGAAGCCACGGGGATCAA
AAACCCGTACCAAGTCAAGCCCATTGACGGGGGAGTGCAGTTGCGAGGAT
CGCGGTTTTCTCCTCTCGTGGCCCTCTACAACCCTCACGATGCTCCTCTG
CAAGTATTGGAGGCCTACAGCACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90053:407..730+

>mRNA_M-pyrifera_M_contig90053.20873.1 ID=mRNA_M-pyrifera_M_contig90053.20873.1|Name=mRNA_M-pyrifera_M_contig90053.20873.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig90053:407..730+ (Macrocystis pyrifera P11B4 male)
TCGGTGGAGGTGCGGGAGATTGCGGGTTCGAATGCGGCGTTTTCCGTGGC
TGGGTTTTCTCCAAAGGCGCTTCGCGTGGGAGATTCGATGCGTGTGAGCG
TGATCGTGATCCCCACCACCATGGGGGCCGTGCAGGACGAAATGGTGGTG
CGAACGAGCGTGGGGGAGCTGCGTGTGCCGCTGGAAGCCACGGGGATCAA
AAACCCGTACCAAGTCAAGCCCATTGACGGGGGAGTGCAGTTGCGAGGAT
CGCGGTTTTCTCCTCTCGTGGCCCTCTACAACCCTCACGATGCTCCTCTG
CAAGTATTGGAGGCCTACAGCACGTCGGTGGAGGTGCGGGAGATTGCGGG
TTCGAATGCGGCGTTTTCCGTGGCTGGGTTTTCTCCAAAGGCGCTTCGCG
TGGGAGATTCGATGCGTGTGAGCGTGATCGTGATCCCCACCACCATGGGG
GCCGTGCAGGACGAAATGGTGGTGCGAACGAGCGTGGGGGAGCTGCGTGT
GCCGCTGGAAGCCACGGGGATCAAAAACCCGTACCAAGTCAAGCCCATTG
ACGGGGGAGTGCAGTTGCGAGGATCGCGGTTTTCTCCTCTCGTGGCCCTC
TACAACCCTCACGATGCTCCTCTGCAAGTATTGGAGGCCTACAGCACG
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