mRNA_M-pyrifera_M_contig90051.20871.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90051.20871.1
Unique NamemRNA_M-pyrifera_M_contig90051.20871.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90051.20871.1 vs. uniprot
Match: A0A5B1CM61_9BACT (Uncharacterized protein n=1 Tax=Rubripirellula obstinata TaxID=406547 RepID=A0A5B1CM61_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 1.760e-9
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 TDADRSVYVGYGRALTADVWYQDVVRAEYAVRF 99
            TD+DRS++ GYGR+LT DVWY D+VR EYA+RF
Sbjct:  279 TDSDRSIFAGYGRSLTGDVWYNDIVRLEYAMRF 311
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BLAST of mRNA_M-pyrifera_M_contig90051.20871.1 vs. uniprot
Match: A0A5C5V4G7_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula retiformator TaxID=2527970 RepID=A0A5C5V4G7_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 4.570e-9
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 TDADRSVYVGYGRALTADVWYQDVVRAEYAVRF 99
            T +  SVYVGYGRALT DVWY D++RAEYA+RF
Sbjct:  278 TQSRHSVYVGYGRALTGDVWYHDILRAEYAIRF 310
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BLAST of mRNA_M-pyrifera_M_contig90051.20871.1 vs. uniprot
Match: UPI001E2DD982 (hypothetical protein n=1 Tax=unclassified Blastopirellula TaxID=2647022 RepID=UPI001E2DD982)

HSP 1 Score: 57.4 bits (137), Expect = 1.190e-8
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 TDADRSVYVGYGRALTADVWYQDVVRAEYAVRF 99
            T +  SVYVGYGRA T DVWY D++RAEYA+RF
Sbjct:  278 TQSCHSVYVGYGRAFTGDVWYHDIIRAEYAIRF 310
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BLAST of mRNA_M-pyrifera_M_contig90051.20871.1 vs. uniprot
Match: A0A255QKC5_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula sp. MGV TaxID=2023130 RepID=A0A255QKC5_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 5.730e-8
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 TDADRSVYVGYGRALTADVWYQDVVRAEYAVRF 99
            +D+ RSV+ GYGR+LT  VWY D+VRAEYA+RF
Sbjct:  270 SDSRRSVFAGYGRSLTGHVWYHDIVRAEYAIRF 302
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BLAST of mRNA_M-pyrifera_M_contig90051.20871.1 vs. uniprot
Match: A0A5C6C432_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6C432_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 3.930e-7
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 TDADRSVYVGYGRALTADVWYQDVVRAEYAVRF 99
            +D  RS++ GYGR+LT  VWY D++RAEYA+RF
Sbjct:  285 SDCRRSLFAGYGRSLTRHVWYHDIIRAEYAIRF 317
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BLAST of mRNA_M-pyrifera_M_contig90051.20871.1 vs. uniprot
Match: A0A5C6BCA8_9PLAN (Uncharacterized protein n=7 Tax=Symmachiella TaxID=2795780 RepID=A0A5C6BCA8_9PLAN)

HSP 1 Score: 47.8 bits (112), Expect = 3.240e-5
Identity = 18/28 (64.29%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   16 SVYVGYGRALTADVWYQDVVRAEYAVRF 99
            S+Y+GYGRALT + WYQD++RAEY + F
Sbjct:  395 SIYIGYGRALTGERWYQDILRAEYRMFF 422
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90051.20871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5B1CM61_9BACT1.760e-969.70Uncharacterized protein n=1 Tax=Rubripirellula obs... [more]
A0A5C5V4G7_9BACT4.570e-972.73Uncharacterized protein n=1 Tax=Blastopirellula re... [more]
UPI001E2DD9821.190e-869.70hypothetical protein n=1 Tax=unclassified Blastopi... [more]
A0A255QKC5_9BACT5.730e-866.67Uncharacterized protein n=1 Tax=Rhodopirellula sp.... [more]
A0A5C6C432_9BACT3.930e-760.61Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A5C6BCA8_9PLAN3.240e-564.29Uncharacterized protein n=7 Tax=Symmachiella TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90051contigM-pyrifera_M_contig90051:696..797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816811.8978627-CDS-M-pyrifera_M_contig90051:695..7971622816811.8978627-CDS-M-pyrifera_M_contig90051:695..797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90051 696..797 -
1692278192.8817751-CDS-M-pyrifera_M_contig90051:695..7971692278192.8817751-CDS-M-pyrifera_M_contig90051:695..797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90051 696..797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90051.20871.1prot_M-pyrifera_M_contig90051.20871.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90051 696..797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90051.20871.1

>prot_M-pyrifera_M_contig90051.20871.1 ID=prot_M-pyrifera_M_contig90051.20871.1|Name=mRNA_M-pyrifera_M_contig90051.20871.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=34bp
TDADRSVYVGYGRALTADVWYQDVVRAEYAVRF*
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mRNA from alignment at M-pyrifera_M_contig90051:696..797-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90051.20871.1 ID=mRNA_M-pyrifera_M_contig90051.20871.1|Name=mRNA_M-pyrifera_M_contig90051.20871.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=102bp|location=Sequence derived from alignment at M-pyrifera_M_contig90051:696..797- (Macrocystis pyrifera P11B4 male)
ACCGATGCGGACCGCAGTGTGTACGTCGGTTACGGTCGCGCGCTCACCGC
AGACGTTTGGTACCAGGATGTGGTGCGAGCGGAATACGCGGTGCGGTTTT
AG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90051:696..797-

>mRNA_M-pyrifera_M_contig90051.20871.1 ID=mRNA_M-pyrifera_M_contig90051.20871.1|Name=mRNA_M-pyrifera_M_contig90051.20871.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig90051:696..797- (Macrocystis pyrifera P11B4 male)
ACCGATGCGGACCGCAGTGTGTACGTCGGTTACGGTCGCGCGCTCACCGC
AGACGTTTGGTACCAGGATGTGGTGCGAGCGGAATACGCGGTGCGGTTTT
AGACCGATGCGGACCGCAGTGTGTACGTCGGTTACGGTCGCGCGCTCACC
GCAGACGTTTGGTACCAGGATGTGGTGCGAGCGGAATACGCGGTGCGGTT
TTAG
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