mRNA_M-pyrifera_M_contig109974.2087.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109974.2087.1
Unique NamemRNA_M-pyrifera_M_contig109974.2087.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109974.2087.1 vs. uniprot
Match: A0A517W752_9PLAN (Chromosome partition protein Smc n=8 Tax=Bacteria TaxID=2 RepID=A0A517W752_9PLAN)

HSP 1 Score: 280 bits (717), Expect = 4.340e-84
Identity = 164/200 (82.00%), Postives = 173/200 (86.50%), Query Frame = 1
Query:    1 PASGMDDHSAAEPDSAASAETDTAQSAPSEIETPQATGSLLESFLSQPDETPEPEPVSEPESKQDEGVTLQTSRLLSMFSRETPVEPEVSPEDHATPTMEQTESAEMQSAYELTAAEPSPAPHAEEEENSIAAYMEKLLERSRSKSPGSQPNQKQSGSAKPAGATHQPEAGMKLDHQATAPQLSMEEKLATLNQAPTHAQ 600
            PASGMDDH+AA P+SA    TDTAQSAPSE ETP ATGSLLESFLSQPDETP+PEPV       +EGVTLQTSRLLSMFSRETP EPEV+PEDHATP M QTESAE QSAYE TAAE SPAPHAEEEENSIAAYMEKLLERSRSK+PGSQP+QKQSG+AKPAGATHQP AGM  D  AT  QLSMEEKLATLNQAPTH+Q
Sbjct:  964 PASGMDDHTAANPESAELTVTDTAQSAPSETETPHATGSLLESFLSQPDETPKPEPVXXXXXXXEEGVTLQTSRLLSMFSRETPAEPEVTPEDHATPDMVQTESAETQSAYESTAAETSPAPHAEEEENSIAAYMEKLLERSRSKAPGSQPSQKQSGTAKPAGATHQPGAGMIQDQHATGAQLSMEEKLATLNQAPTHSQ 1163          
BLAST of mRNA_M-pyrifera_M_contig109974.2087.1 vs. uniprot
Match: A0A813B9R2_SYMMI (EpmA protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813B9R2_SYMMI)

HSP 1 Score: 280 bits (717), Expect = 7.410e-84
Identity = 164/200 (82.00%), Postives = 173/200 (86.50%), Query Frame = 1
Query:    1 PASGMDDHSAAEPDSAASAETDTAQSAPSEIETPQATGSLLESFLSQPDETPEPEPVSEPESKQDEGVTLQTSRLLSMFSRETPVEPEVSPEDHATPTMEQTESAEMQSAYELTAAEPSPAPHAEEEENSIAAYMEKLLERSRSKSPGSQPNQKQSGSAKPAGATHQPEAGMKLDHQATAPQLSMEEKLATLNQAPTHAQ 600
            PASGMDDH+AA P+SA    TDTAQSAPSE ETP ATGSLLESFLSQPDETP+PEPV       +EGVTLQTSRLLSMFSRETP EPEV+PEDHATP M QTESAE QSAYE TAAE SPAPHAEEEENSIAAYMEKLLERSRSK+PGSQP+QKQSG+AKPAGATHQP AGM  D  AT  QLSMEEKLATLNQAPTH+Q
Sbjct:  992 PASGMDDHTAANPESAELTVTDTAQSAPSETETPHATGSLLESFLSQPDETPKPEPVXXXXXXXEEGVTLQTSRLLSMFSRETPAEPEVTPEDHATPDMVQTESAETQSAYESTAAETSPAPHAEEEENSIAAYMEKLLERSRSKAPGSQPSQKQSGTAKPAGATHQPGAGMIQDQHATGAQLSMEEKLATLNQAPTHSQ 1191          
BLAST of mRNA_M-pyrifera_M_contig109974.2087.1 vs. uniprot
Match: A0A518A190_9PLAN (Chromosome partition protein Smc n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A190_9PLAN)

HSP 1 Score: 142 bits (357), Expect = 1.710e-35
Identity = 101/182 (55.49%), Postives = 122/182 (67.03%), Query Frame = 1
Query:   88 EIETPQATGSLLESFLSQPDETP--EPEPVSEPESKQDEGVTLQTSRLLSMFSRETPVEPEVSPEDHATPTMEQTESAEM-------QSAYELTAAEPSPAPHAEEEENSIAAYMEKLLERSRSKSP--GSQPNQKQSGSAKPAGATHQPEAGMKLDHQATAPQLSMEEKLATLNQAPTHAQ 600
            E   PQATGSLLESFLSQPDE P  EP+P  EPE KQD G+TLQTSRLL+MF+RETP  PE+ P +  TP    TE A         Q+A +L   EP       E++NSIA+YMEKLLERSRSKSP  GSQ   ++ G+A   G++    +G+  D  + + Q+SMEEKLATLNQAPTHAQ
Sbjct:  968 ETSAPQATGSLLESFLSQPDEAPQTEPQPELEPE-KQDSGMTLQTSRLLNMFTRETPASPEIPPVETETPPAPPTEPAPQSSTLEPEQNAADLPQEEP-------EDDNSIASYMEKLLERSRSKSPAPGSQHQNQKPGTANQPGSS----SGLMPDGHSPSSQISMEEKLATLNQAPTHAQ 1137          
BLAST of mRNA_M-pyrifera_M_contig109974.2087.1 vs. uniprot
Match: A0A517VDH5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VDH5_9PLAN)

HSP 1 Score: 70.5 bits (171), Expect = 1.180e-10
Identity = 75/193 (38.86%), Postives = 100/193 (51.81%), Query Frame = 1
Query:   58 ETDTAQSAPSEIET-PQATGSLLESFLSQPDETPEPEPVSEPESKQDEGVTLQTSRLLSMFSRETPVEPEVSPEDHATPTMEQTESAEMQSAYELTAAEPSPAPH-----AEEEENSIAAYMEKLLERSRSKSPGS---QPNQKQSGSAKPA---GATHQPEAGMKLDHQATAPQLSMEEKLATLNQAPTHAQ 600
            E D   + P+E E+ PQATGSLL+SF++   +  E E  SEP+        L+TS LL +F            E++ T  +E     E  S++    ++P  AP+     A E+ NSIA+YME+LL RSR KS  +   +PN K   S K A   G T Q  A    +       +SMEEKLATLNQAP H Q
Sbjct:  899 ERDQEDNLPAEPESEPQATGSLLQSFIN---DYAESELESEPK------TPLKTSSLLDLFK-----------ENNDTAAVESPPECESDSSFTEQQSDPENAPNQSELDAAEDSNSIASYMEQLLARSRGKSGSTNAPKPNSKTQASHKSATQAGPTSQSHADSTSETALLNSSISMEEKLATLNQAPAHLQ 1071          
BLAST of mRNA_M-pyrifera_M_contig109974.2087.1 vs. uniprot
Match: A0A517RAF6_9PLAN (Chromosome partition protein Smc n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RAF6_9PLAN)

HSP 1 Score: 65.9 bits (159), Expect = 4.570e-9
Identity = 78/202 (38.61%), Postives = 109/202 (53.96%), Query Frame = 1
Query:   43 SAASAETDTAQ--SAPSEIETPQATGSLLESFLSQPDETPEPEPVSEPESKQDEGVTLQTSRLLSMFSRETPVEPEVSPEDHATPT-------MEQTESA-EMQSAYELTAAEPSPAPHAEEEENSIAAYMEKLLERSRS-KSPGSQPNQKQSGSAKPA-----GATHQPEAGMKLDHQATAPQLSMEEKLATLNQAPTHAQ 600
            S+ +AETD  +  SA S  E P+ATGSLL+SF+    +  EPE  +EP  K        +  LL +F+++T  +PE +  + AT         + +TE+  E + A EL  A+ S         +SIAAYMEKLLERSR  KS  S P++ +S  A P      GA+   E    L+ Q     ++MEEKL TL +APTH+Q
Sbjct:  959 SSPAAETDIQEQTSAESIEEIPEATGSLLQSFMKNSSKD-EPETPAEPAEK--------SGSLLDLFTKKT--DPETTEPEQATDQNPAQSKQISETEATTEQKEALELEDADDS---------DSIAAYMEKLLERSRGGKSGESAPSESRSVKANPEPGFEIGASCPLETSSLLETQPATASMTMEEKLETLKKAPTHSQ 1140          
BLAST of mRNA_M-pyrifera_M_contig109974.2087.1 vs. uniprot
Match: A0A517X654_9PLAN (Chromosome partition protein Smc n=6 Tax=Planctomycetaceae TaxID=126 RepID=A0A517X654_9PLAN)

HSP 1 Score: 62.8 bits (151), Expect = 5.140e-8
Identity = 69/179 (38.55%), Postives = 93/179 (51.96%), Query Frame = 1
Query:   88 EIETPQATGSLLESFLSQPDETPEPEPVSEPESKQDEGVTLQTSRLLSMFSRETPVEP-EVSPEDHATPTMEQTESAEMQSAYELTAAEPSPAPHAEEEENSIAAYMEKLLERSRSKSPGSQPNQKQSG----SAKPA---GATHQPEAGMKLDHQATAPQLSMEEKLATLNQAPTHAQ 600
            E E P ATGSLL+SF++   E+       E E++ +  V L+T+ LL +F+ +      E +P   A   + + +    Q+  E T  E   A    E+ NSIAAYME+LL RSR KS  +Q  +  S     S KPA    +T QP+     D  A    +SMEEKLATL QAP H Q
Sbjct:  912 ETEAP-ATGSLLQSFINDYAES-----ELETETEAEPAVPLKTTSLLDLFNEKNDATAGEAAPAYQADSFLPEEQFQSAQTESEPTQDELDDA----EDSNSIAAYMEQLLARSRGKSGSTQSAKPNSAAGHTSQKPATKTSSTLQPQVASSSDSAALNSSVSMEEKLATLKQAPAHQQ 1080          
BLAST of mRNA_M-pyrifera_M_contig109974.2087.1 vs. uniprot
Match: A0A518I729_9PLAN (Chromosome partition protein Smc n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I729_9PLAN)

HSP 1 Score: 55.5 bits (132), Expect = 1.610e-5
Identity = 63/175 (36.00%), Postives = 90/175 (51.43%), Query Frame = 1
Query:   94 ETPQATGSLLESFLSQPDETPEPEPVSEPESKQDEGVTLQTSRLLSMFSRETPVEPEVSPEDHATPTMEQTESAEMQSAYELTAAEPSPAPHAEEEENSIAAYMEKLLERSRS-KSPGSQPNQKQSGSAKPA-----GATHQPEAGMKLDHQATAPQLSMEEKLATLNQAPTHAQ 600
            E P+A+GSLL+SF+         E  +  ES+ ++    ++  LL +F+++T   PE    + AT     TE+A+            S      ++ +SIAAYMEKLLERSR  KS GS P++  S  A P      GA+        L+ Q     +SMEEKL TL +APTH+Q
Sbjct: 1022 EIPEASGSLLQSFM---------ENSANEESETNDEPAAKSGSLLDLFTQKT--NPESVDSEQATDESP-TETAQTXXXXXXXXXXDSLELADADDSDSIAAYMEKLLERSRGGKSGGSTPSEASSVKANPEAGLEIGASCPLVTSNLLETQPPTASMSMEEKLETLKKAPTHSQ 1184          
BLAST of mRNA_M-pyrifera_M_contig109974.2087.1 vs. uniprot
Match: A0A2E2BY33_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BY33_9PLAN)

HSP 1 Score: 54.7 bits (130), Expect = 2.910e-5
Identity = 70/191 (36.65%), Postives = 97/191 (50.79%), Query Frame = 1
Query:   58 ETDTAQSAPSEIETPQATGSLLESFLSQPDETPEPEPVSEPESKQDEGVTLQTSRLLSMFSRET-PVEPEVSPEDHA--TPTMEQTESAEMQSAYELTAAEPSPAPHAEEEENSIAAYMEKLLERSRSKSPGSQPNQKQSGSAKPAGATHQPEAGMKLDHQATAPQ-------LSMEEKLATLNQAPTHAQ 600
            E D   SA +E +TP A+GSLL+SF++   +  E E  +E ESK    V L+TS LL +F  +  P   E S + H+  +PT + T+        EL  A  S         NSIA+YME+LL R+R K+ GS    K   SA  +      +    L     +P+       +++EEKLATLNQAP H Q
Sbjct:  903 EQDERLSADTESDTP-ASGSLLQSFIN---DYAESELEAESESKP--AVPLKTSSLLDLFKEDNKPAADETSTKSHSDSSPTGQPTQQENTPEQSELDDAADS---------NSIASYMEQLLARTRGKT-GSTYASKPHSSAGHSSQKTVTKTASSLQPPPGSPETALHNSSITLEEKLATLNQAPAHQQ 1077          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109974.2087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A517W752_9PLAN4.340e-8482.00Chromosome partition protein Smc n=8 Tax=Bacteria ... [more]
A0A813B9R2_SYMMI7.410e-8482.00EpmA protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A518A190_9PLAN1.710e-3555.49Chromosome partition protein Smc n=3 Tax=Gimesia p... [more]
A0A517VDH5_9PLAN1.180e-1038.86Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A517RAF6_9PLAN4.570e-938.61Chromosome partition protein Smc n=1 Tax=Gimesia a... [more]
A0A517X654_9PLAN5.140e-838.55Chromosome partition protein Smc n=6 Tax=Planctomy... [more]
A0A518I729_9PLAN1.610e-536.00Chromosome partition protein Smc n=1 Tax=Gimesia f... [more]
A0A2E2BY33_9PLAN2.910e-536.65Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109974contigM-pyrifera_M_contig109974:2..601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.0
Seed ortholog evalue3.4e-10
Seed eggNOG ortholog344747.PM8797T_05350
KEGG koko:K12472
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nuclear chromosome segregation
EggNOG OGsCOG1196@1,COG1196@2
COG Functional cat.D
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size600
Cds size588
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.3609421-UTR-M-pyrifera_M_contig109974:1..131622815610.3609421-UTR-M-pyrifera_M_contig109974:1..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109974 2..13 +
1692277486.2985795-UTR-M-pyrifera_M_contig109974:1..131692277486.2985795-UTR-M-pyrifera_M_contig109974:1..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109974 2..13 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.378436-CDS-M-pyrifera_M_contig109974:13..6011622815610.378436-CDS-M-pyrifera_M_contig109974:13..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109974 14..601 +
1692277486.307858-CDS-M-pyrifera_M_contig109974:13..6011692277486.307858-CDS-M-pyrifera_M_contig109974:13..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109974 14..601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109974.2087.1prot_M-pyrifera_M_contig109974.2087.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109974 14..601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109974.2087.1

>prot_M-pyrifera_M_contig109974.2087.1 ID=prot_M-pyrifera_M_contig109974.2087.1|Name=mRNA_M-pyrifera_M_contig109974.2087.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=196bp
MDDHSAAEPDSAASAETDTAQSAPSEIETPQATGSLLESFLSQPDETPEP
EPVSEPESKQDEGVTLQTSRLLSMFSRETPVEPEVSPEDHATPTMEQTES
AEMQSAYELTAAEPSPAPHAEEEENSIAAYMEKLLERSRSKSPGSQPNQK
QSGSAKPAGATHQPEAGMKLDHQATAPQLSMEEKLATLNQAPTHAQ
back to top

mRNA from alignment at M-pyrifera_M_contig109974:2..601+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109974.2087.1 ID=mRNA_M-pyrifera_M_contig109974.2087.1|Name=mRNA_M-pyrifera_M_contig109974.2087.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig109974:2..601+ (Macrocystis pyrifera P11B4 male)
CCTGCCAGTGGGATGGATGATCATAGCGCCGCAGAGCCAGACTCAGCAGC GTCAGCGGAAACAGACACCGCTCAATCAGCCCCATCTGAAATAGAAACAC CTCAAGCGACCGGCTCTTTACTGGAATCATTCTTGAGCCAGCCGGATGAG ACACCCGAGCCGGAACCAGTTTCTGAACCTGAATCAAAACAGGATGAGGG TGTGACACTGCAGACAAGCCGGCTGCTGAGCATGTTCTCCCGCGAGACTC CTGTAGAACCAGAAGTTTCTCCCGAAGACCACGCCACACCGACCATGGAG CAAACTGAGTCAGCAGAAATGCAGTCTGCTTATGAATTGACTGCAGCCGA ACCCTCTCCTGCTCCGCACGCAGAAGAGGAAGAAAACTCGATTGCAGCCT ACATGGAAAAACTGCTGGAGCGATCGCGTTCCAAATCTCCCGGTTCACAA CCAAATCAGAAACAATCCGGATCAGCAAAGCCGGCTGGCGCGACGCATCA ACCGGAAGCAGGTATGAAGCTGGACCACCAAGCCACCGCTCCCCAGCTGT CGATGGAAGAAAAACTGGCGACGCTAAACCAGGCTCCCACGCACGCTCAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig109974:2..601+

>mRNA_M-pyrifera_M_contig109974.2087.1 ID=mRNA_M-pyrifera_M_contig109974.2087.1|Name=mRNA_M-pyrifera_M_contig109974.2087.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1176bp|location=Sequence derived from alignment at M-pyrifera_M_contig109974:2..601+ (Macrocystis pyrifera P11B4 male)
ATGGATGATCATAGCGCCGCAGAGCCAGACTCAGCAGCGTCAGCGGAAAC
AGACACCGCTCAATCAGCCCCATCTGAAATAGAAACACCTCAAGCGACCG
GCTCTTTACTGGAATCATTCTTGAGCCAGCCGGATGAGACACCCGAGCCG
GAACCAGTTTCTGAACCTGAATCAAAACAGGATGAGGGTGTGACACTGCA
GACAAGCCGGCTGCTGAGCATGTTCTCCCGCGAGACTCCTGTAGAACCAG
AAGTTTCTCCCGAAGACCACGCCACACCGACCATGGAGCAAACTGAGTCA
GCAGAAATGCAGTCTGCTTATGAATTGACTGCAGCCGAACCCTCTCCTGC
TCCGCACGCAGAAGAGGAAGAAAACTCGATTGCAGCCTACATGGAAAAAC
TGCTGGAGCGATCGCGTTCCAAATCTCCCGGTTCACAACCAAATCAGAAA
CAATCCGGATCAGCAAAGCCGGCTGGCGCGACGCATCAACCGGAAGCAGG
TATGAAGCTGGACCACCAAGCCACCGCTCCCCAGCTGTCGATGGAAGAAA
AACTGGCGACGCTAAACCAGGCTCCCACGCACGCTCAGATGGATGATCAT
AGCGCCGCAGAGCCAGACTCAGCAGCGTCAGCGGAAACAGACACCGCTCA
ATCAGCCCCATCTGAAATAGAAACACCTCAAGCGACCGGCTCTTTACTGG
AATCATTCTTGAGCCAGCCGGATGAGACACCCGAGCCGGAACCAGTTTCT
GAACCTGAATCAAAACAGGATGAGGGTGTGACACTGCAGACAAGCCGGCT
GCTGAGCATGTTCTCCCGCGAGACTCCTGTAGAACCAGAAGTTTCTCCCG
AAGACCACGCCACACCGACCATGGAGCAAACTGAGTCAGCAGAAATGCAG
TCTGCTTATGAATTGACTGCAGCCGAACCCTCTCCTGCTCCGCACGCAGA
AGAGGAAGAAAACTCGATTGCAGCCTACATGGAAAAACTGCTGGAGCGAT
CGCGTTCCAAATCTCCCGGTTCACAACCAAATCAGAAACAATCCGGATCA
GCAAAGCCGGCTGGCGCGACGCATCAACCGGAAGCAGGTATGAAGCTGGA
CCACCAAGCCACCGCTCCCCAGCTGTCGATGGAAGAAAAACTGGCGACGC
TAAACCAGGCTCCCACGCACGCTCAG
back to top