mRNA_M-pyrifera_M_contig90036.20865.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90036.20865.1
Unique NamemRNA_M-pyrifera_M_contig90036.20865.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90036.20865.1 vs. uniprot
Match: C1DZN1_MICCC (Uncharacterized protein n=4 Tax=Micromonas TaxID=38832 RepID=C1DZN1_MICCC)

HSP 1 Score: 213 bits (542), Expect = 5.610e-66
Identity = 106/119 (89.08%), Postives = 113/119 (94.96%), Query Frame = 1 
Query:    1 DMIRRRNLRTRGIKMLILDEADEMLSMGFKEQIYDIYRYLPPEIQVVLVSATLPQDVLIMTTKFMTNPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLAITQAVIFCNTK 357
            DMI+RRNLRTR IK LILDEADEML+ GFKEQIYD+YRYLPPE QVVLVSATLPQ+VL MTTKFMT+P+RILVKRDELTLEGIKQFFVAVEKE+WKFDTLCDLYDTL ITQAVIFCNTK
Sbjct:  152 DMIKRRNLRTRNIKALILDEADEMLNKGFKEQIYDVYRYLPPETQVVLVSATLPQEVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTK 270
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BLAST of mRNA_M-pyrifera_M_contig90036.20865.1 vs. uniprot
Match: A0A099ZQW7_TINGU (Eukaryotic initiation factor 4A-III (Fragment) n=1 Tax=Tinamus guttatus TaxID=94827 RepID=A0A099ZQW7_TINGU)

HSP 1 Score: 206 bits (525), Expect = 1.330e-65
Identity = 101/119 (84.87%), Postives = 111/119 (93.28%), Query Frame = 1 
Query:    1 DMIRRRNLRTRGIKMLILDEADEMLSMGFKEQIYDIYRYLPPEIQVVLVSATLPQDVLIMTTKFMTNPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLAITQAVIFCNTK 357
            DMIRRR+LRTR IKML+LDEADEML+ GFKEQIYD+YRYLPP  QVVL+SATLP ++L MT KFMT+PIRILVKRDELTLEGIKQFFVAVE+E+WKFDTLCDLYDTL ITQAVIFCNTK
Sbjct:  100 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 218
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BLAST of mRNA_M-pyrifera_M_contig90036.20865.1 vs. uniprot
Match: A0A0M8MJI1_9BASI (Dead-domain-containing protein n=2 Tax=Malassezia TaxID=55193 RepID=A0A0M8MJI1_9BASI)

HSP 1 Score: 211 bits (538), Expect = 2.360e-65
Identity = 105/119 (88.24%), Postives = 113/119 (94.96%), Query Frame = 1 
Query:    1 DMIRRRNLRTRGIKMLILDEADEMLSMGFKEQIYDIYRYLPPEIQVVLVSATLPQDVLIMTTKFMTNPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLAITQAVIFCNTK 357
            DMIRRR+LRT+ IKMLILDEADE+L+MGFK+QIYDIYRYLPP  QVVLVSATLP DVL MTTKFMT+P+RILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTL ITQAVIFCNT+
Sbjct:  154 DMIRRRHLRTKNIKMLILDEADELLNMGFKDQIYDIYRYLPPATQVVLVSATLPHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTR 272
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BLAST of mRNA_M-pyrifera_M_contig90036.20865.1 vs. uniprot
Match: M8A503_TRIUA (DEAD-box ATP-dependent RNA helicase 34 n=3 Tax=Triticum TaxID=4564 RepID=M8A503_TRIUA)

HSP 1 Score: 207 bits (527), Expect = 2.610e-65
Identity = 99/119 (83.19%), Postives = 113/119 (94.96%), Query Frame = 1 
Query:    1 DMIRRRNLRTRGIKMLILDEADEMLSMGFKEQIYDIYRYLPPEIQVVLVSATLPQDVLIMTTKFMTNPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLAITQAVIFCNTK 357
            DMI+RR LRTR IK+L+LDEADEML+ GFK+QIYD+YRYLPPE+QVVL+SATLP D+L +T+KFMT+P+RILVKRDELTLEGIKQFFVAVEKE+WKFDTLCDLYDTL ITQAVIFCNTK
Sbjct:   79 DMIKRRTLRTRAIKLLVLDEADEMLTRGFKDQIYDVYRYLPPELQVVLISATLPHDILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTK 197
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BLAST of mRNA_M-pyrifera_M_contig90036.20865.1 vs. uniprot
Match: A0A7S4MMT2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MMT2_9EUKA)

HSP 1 Score: 207 bits (527), Expect = 3.640e-65
Identity = 100/119 (84.03%), Postives = 113/119 (94.96%), Query Frame = 1 
Query:    1 DMIRRRNLRTRGIKMLILDEADEMLSMGFKEQIYDIYRYLPPEIQVVLVSATLPQDVLIMTTKFMTNPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLAITQAVIFCNTK 357
            DMIRRRNLRT+ IKML+LDEADEMLS GFK+QIYDIYRYLPPEIQVV++SATLP +VL +TTKFMT P+RILVKRDELTLEGI+QFFVAVE+EDWKF+TLCDLYDT+ ITQAVIFCNT+
Sbjct:  150 DMIRRRNLRTKDIKMLVLDEADEMLSQGFKDQIYDIYRYLPPEIQVVVISATLPHEVLEITTKFMTTPVRILVKRDELTLEGIRQFFVAVEQEDWKFETLCDLYDTMTITQAVIFCNTR 268
[Close]
BLAST of mRNA_M-pyrifera_M_contig90036.20865.1 vs. uniprot
Match: A0A5B0MYS6_PUCGR (RNA helicase n=1 Tax=Puccinia graminis f. sp. tritici TaxID=56615 RepID=A0A5B0MYS6_PUCGR)

HSP 1 Score: 210 bits (534), Expect = 5.120e-65
Identity = 102/119 (85.71%), Postives = 114/119 (95.80%), Query Frame = 1 
Query:    1 DMIRRRNLRTRGIKMLILDEADEMLSMGFKEQIYDIYRYLPPEIQVVLVSATLPQDVLIMTTKFMTNPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLAITQAVIFCNTK 357
            DMIRRRNLRTR IKML+LDEADE+L++GFK+QIYD+YRYLPP+ QVV++SATLP DVL MTTKFMT+PIRILVKRDELTLEGIKQFFVAVEKE+WKFDTLCDLYDTL ITQAVIFCNT+
Sbjct:  131 DMIRRRNLRTRNIKMLVLDEADELLNLGFKDQIYDVYRYLPPQTQVVVLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 249
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BLAST of mRNA_M-pyrifera_M_contig90036.20865.1 vs. uniprot
Match: M8AAC7_TRIUA (DEAD-box ATP-dependent RNA helicase 2 n=16 Tax=Mesangiospermae TaxID=1437183 RepID=M8AAC7_TRIUA)

HSP 1 Score: 208 bits (530), Expect = 5.250e-65
Identity = 100/119 (84.03%), Postives = 113/119 (94.96%), Query Frame = 1 
Query:    1 DMIRRRNLRTRGIKMLILDEADEMLSMGFKEQIYDIYRYLPPEIQVVLVSATLPQDVLIMTTKFMTNPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLAITQAVIFCNTK 357
            DMI+RR LRTR IK+L+LDEADEMLS GFK+QIYD+YRYLPPE+QVVL+SATLP D+L +T+KFMT+P+RILVKRDELTLEGIKQFFVAVEKE+WKFDTLCDLYDTL ITQAVIFCNTK
Sbjct:   79 DMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHDILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTK 197
[Close]
BLAST of mRNA_M-pyrifera_M_contig90036.20865.1 vs. uniprot
Match: A0A0F7SRP4_PHARH (Dead-domain-containing protein n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SRP4_PHARH)

HSP 1 Score: 211 bits (537), Expect = 6.040e-65
Identity = 105/119 (88.24%), Postives = 112/119 (94.12%), Query Frame = 1 
Query:    1 DMIRRRNLRTRGIKMLILDEADEMLSMGFKEQIYDIYRYLPPEIQVVLVSATLPQDVLIMTTKFMTNPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLAITQAVIFCNTK 357
            DMIRRRNLRTR +KMLILDEADE+L+ GFK+QIYDIYRYLPP  QVV++SATLP DVL MTTKFMT+PIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTL ITQAVIFCNTK
Sbjct:  154 DMIRRRNLRTRNVKMLILDEADELLNQGFKDQIYDIYRYLPPATQVVVLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTK 272
[Close]
BLAST of mRNA_M-pyrifera_M_contig90036.20865.1 vs. uniprot
Match: G3HTE6_CRIGR (Eukaryotic initiation factor 4A-III n=22 Tax=Amniota TaxID=32524 RepID=G3HTE6_CRIGR)

HSP 1 Score: 206 bits (525), Expect = 8.000e-65
Identity = 101/119 (84.87%), Postives = 111/119 (93.28%), Query Frame = 1 
Query:    1 DMIRRRNLRTRGIKMLILDEADEMLSMGFKEQIYDIYRYLPPEIQVVLVSATLPQDVLIMTTKFMTNPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLAITQAVIFCNTK 357
            DMIRRR+LRTR IKML+LDEADEML+ GFKEQIYD+YRYLPP  QVVL+SATLP ++L MT KFMT+PIRILVKRDELTLEGIKQFFVAVE+E+WKFDTLCDLYDTL ITQAVIFCNTK
Sbjct:   37 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig90036.20865.1 vs. uniprot
Match: L8X949_THACA (ATP-dependent RNA helicase FAL1 n=1 Tax=Thanatephorus cucumeris (strain AG1-IA) TaxID=983506 RepID=L8X949_THACA)

HSP 1 Score: 210 bits (534), Expect = 8.940e-65
Identity = 103/119 (86.55%), Postives = 112/119 (94.12%), Query Frame = 1 
Query:    1 DMIRRRNLRTRGIKMLILDEADEMLSMGFKEQIYDIYRYLPPEIQVVLVSATLPQDVLIMTTKFMTNPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLAITQAVIFCNTK 357
            DMIRRRNLRTR IKML+LDEADE+L+ GFK+QIYD+YRYLPP  QVV++SATLP DVL MTTKFMT+PIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTL ITQAVIFCNT+
Sbjct:  151 DMIRRRNLRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPPSTQVVVLSATLPHDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTR 269
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90036.20865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C1DZN1_MICCC5.610e-6689.08Uncharacterized protein n=4 Tax=Micromonas TaxID=3... [more]
A0A099ZQW7_TINGU1.330e-6584.87Eukaryotic initiation factor 4A-III (Fragment) n=1... [more]
A0A0M8MJI1_9BASI2.360e-6588.24Dead-domain-containing protein n=2 Tax=Malassezia ... [more]
M8A503_TRIUA2.610e-6583.19DEAD-box ATP-dependent RNA helicase 34 n=3 Tax=Tri... [more]
A0A7S4MMT2_9EUKA3.640e-6584.03Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A5B0MYS6_PUCGR5.120e-6585.71RNA helicase n=1 Tax=Puccinia graminis f. sp. trit... [more]
M8AAC7_TRIUA5.250e-6584.03DEAD-box ATP-dependent RNA helicase 2 n=16 Tax=Mes... [more]
A0A0F7SRP4_PHARH6.040e-6588.24Dead-domain-containing protein n=1 Tax=Phaffia rho... [more]
G3HTE6_CRIGR8.000e-6584.87Eukaryotic initiation factor 4A-III n=22 Tax=Amnio... [more]
L8X949_THACA8.940e-6586.55ATP-dependent RNA helicase FAL1 n=1 Tax=Thanatepho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90036contigM-pyrifera_M_contig90036:440..796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score210.7
Seed ortholog evalue3.7e-52
Seed eggNOG ortholog296587.XP_002499891.1
KEGG koko:K13025
KEGG Pathwayko03013,ko03015,ko03040,map03013,map03015,map03040
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0001666,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005730,GO:0005737,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009628,GO:0009987,GO:0010467,GO:0010468,GO:0010501,GO:0016020,GO:0016070,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035145,GO:0036293,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070482,GO:0071013,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.Belongs to the DEAD box helicase family
EggNOG OGs34GTX@3041,37QGM@33090,COG0513@1,KOG0328@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03012,ko03019,ko03041
Exons1
Model size357
Cds size354
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816811.6095262-UTR-M-pyrifera_M_contig90036:439..4421622816811.6095262-UTR-M-pyrifera_M_contig90036:439..442Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90036 440..442 +
1692278192.6916645-UTR-M-pyrifera_M_contig90036:439..4421692278192.6916645-UTR-M-pyrifera_M_contig90036:439..442Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90036 440..442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816811.6207294-CDS-M-pyrifera_M_contig90036:442..7961622816811.6207294-CDS-M-pyrifera_M_contig90036:442..796Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90036 443..796 +
1692278192.7105467-CDS-M-pyrifera_M_contig90036:442..7961692278192.7105467-CDS-M-pyrifera_M_contig90036:442..796Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90036 443..796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90036.20865.1prot_M-pyrifera_M_contig90036.20865.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90036 443..796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90036.20865.1

>prot_M-pyrifera_M_contig90036.20865.1 ID=prot_M-pyrifera_M_contig90036.20865.1|Name=mRNA_M-pyrifera_M_contig90036.20865.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MIRRRNLRTRGIKMLILDEADEMLSMGFKEQIYDIYRYLPPEIQVVLVSA
TLPQDVLIMTTKFMTNPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLC
DLYDTLAITQAVIFCNTK
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mRNA from alignment at M-pyrifera_M_contig90036:440..796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90036.20865.1 ID=mRNA_M-pyrifera_M_contig90036.20865.1|Name=mRNA_M-pyrifera_M_contig90036.20865.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig90036:440..796+ (Macrocystis pyrifera P11B4 male)
GACATGATCAGGCGCAGGAACCTGCGCACGCGGGGCATCAAGATGCTGAT
CCTGGACGAGGCAGACGAGATGCTCAGCATGGGATTCAAGGAGCAGATCT
ATGACATCTACCGCTACCTGCCGCCGGAGATCCAGGTGGTGCTCGTGTCT
GCAACGCTGCCGCAGGACGTGCTCATCATGACGACCAAGTTCATGACCAA
CCCCATCAGAATCCTCGTGAAGCGCGACGAGCTCACCCTCGAGGGCATCA
AGCAGTTCTTCGTGGCCGTGGAGAAGGAGGACTGGAAGTTCGATACCCTG
TGCGACCTCTACGACACCCTCGCCATCACGCAGGCCGTCATCTTCTGCAA
CACCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90036:440..796+

>mRNA_M-pyrifera_M_contig90036.20865.1 ID=mRNA_M-pyrifera_M_contig90036.20865.1|Name=mRNA_M-pyrifera_M_contig90036.20865.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig90036:440..796+ (Macrocystis pyrifera P11B4 male)
ATGATCAGGCGCAGGAACCTGCGCACGCGGGGCATCAAGATGCTGATCCT
GGACGAGGCAGACGAGATGCTCAGCATGGGATTCAAGGAGCAGATCTATG
ACATCTACCGCTACCTGCCGCCGGAGATCCAGGTGGTGCTCGTGTCTGCA
ACGCTGCCGCAGGACGTGCTCATCATGACGACCAAGTTCATGACCAACCC
CATCAGAATCCTCGTGAAGCGCGACGAGCTCACCCTCGAGGGCATCAAGC
AGTTCTTCGTGGCCGTGGAGAAGGAGGACTGGAAGTTCGATACCCTGTGC
GACCTCTACGACACCCTCGCCATCACGCAGGCCGTCATCTTCTGCAACAC
CAAGATGATCAGGCGCAGGAACCTGCGCACGCGGGGCATCAAGATGCTGA
TCCTGGACGAGGCAGACGAGATGCTCAGCATGGGATTCAAGGAGCAGATC
TATGACATCTACCGCTACCTGCCGCCGGAGATCCAGGTGGTGCTCGTGTC
TGCAACGCTGCCGCAGGACGTGCTCATCATGACGACCAAGTTCATGACCA
ACCCCATCAGAATCCTCGTGAAGCGCGACGAGCTCACCCTCGAGGGCATC
AAGCAGTTCTTCGTGGCCGTGGAGAAGGAGGACTGGAAGTTCGATACCCT
GTGCGACCTCTACGACACCCTCGCCATCACGCAGGCCGTCATCTTCTGCA
ACACCAAG
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