mRNA_M-pyrifera_M_contig89975.20850.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89975.20850.1
Unique NamemRNA_M-pyrifera_M_contig89975.20850.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89975.20850.1 vs. uniprot
Match: S4RLF7_PETMA (Dual specificity phosphatase 10 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RLF7_PETMA)

HSP 1 Score: 52.0 bits (123), Expect = 6.380e-6
Identity = 31/108 (28.70%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:   19 GVSLIVSCIPSVSFAFEDRGMEYVHVPIGDFATRMNEEVIEEKLGEVVEAVRKVVGEGKAVLFHCNAGASRSATLLLLTLLQLHPELPLPTLFKRVQAKRPIILPQFH 342
            G+ L+++    V+  +E  G+ Y  +P  D     +++ + +   E  E +      G+ +L HC AG SRSAT+++  L++ H  + +   +K V+ KRPII P  +
Sbjct:   12 GIGLVLN----VTAHYERGGLHYKRLPANDSDNDSDKQNLRQYFEEAFEFIEDAHRRGQGLLVHCQAGVSRSATIVIAYLMK-HTRMTMTDAYKFVKGKRPIISPNLN 114
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BLAST of mRNA_M-pyrifera_M_contig89975.20850.1 vs. uniprot
Match: A0A1L8G644_XENLA (dual specificity protein phosphatase 10 n=3 Tax=Xenopus TaxID=8353 RepID=A0A1L8G644_XENLA)

HSP 1 Score: 52.8 bits (125), Expect = 1.350e-5
Identity = 36/115 (31.30%), Postives = 61/115 (53.04%), Query Frame = 1 
Query:    1 EGLGKDGVSLIVSCIPSVSFAFEDRGM-EYVHVPIGDFATRMNEEVIEEKLGEVVEAVRKVVGEGKAVLFHCNAGASRSATLLLLTLLQLHPELPLPTLFKRVQAKRPIILPQFH 342
            E + +  +S IV+    +     D+G+  Y  +P    AT  N++ + +   E  E + +    GKA+L HC AG SRSAT+++  L++ H  + +   +K V+ KRPII P  +
Sbjct:  336 EKMQRLNISYIVNVTTHIPLYHYDKGIFNYKRLP----ATDSNKQNLRQYFEEAFEFIEEAHQCGKALLIHCQAGVSRSATIVIAYLMK-HTRMTMTDAYKFVKGKRPIISPNLN 445
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BLAST of mRNA_M-pyrifera_M_contig89975.20850.1 vs. uniprot
Match: A0A444UPX2_ACIRT (Protein-tyrosine-phosphatase n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444UPX2_ACIRT)

HSP 1 Score: 50.4 bits (119), Expect = 5.240e-5
Identity = 33/115 (28.70%), Postives = 60/115 (52.17%), Query Frame = 1 
Query:    1 EGLGKDGVSLIVSCIPSVSFAFEDRGM-EYVHVPIGDFATRMNEEVIEEKLGEVVEAVRKVVGEGKAVLFHCNAGASRSATLLLLTLLQLHPELPLPTLFKRVQAKRPIILPQFH 342
            E + K  ++ I++    +     D+G+  Y  +P    AT  N++ + +   E  E + +    GK +L HC AG SRSAT+++  L++ H  + +   +K V+ +RPII P  +
Sbjct:   69 EKVQKMNIAYIINVTTHLPLFHYDKGIFNYKRLP----ATDSNKQNLRQYFEEAFEFIEEAHQSGKGLLIHCQAGVSRSATIVIAYLMK-HTRMTMTDAYKFVKTRRPIISPNLN 178
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BLAST of mRNA_M-pyrifera_M_contig89975.20850.1 vs. uniprot
Match: A0A2I4BVY3_9TELE (uncharacterized protein LOC106523125 n=2 Tax=Rivulidae TaxID=28771 RepID=A0A2I4BVY3_9TELE)

HSP 1 Score: 50.8 bits (120), Expect = 6.810e-5
Identity = 28/89 (31.46%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:   76 GMEYVHVPIGDFATRMNEEVIEEKLGEVVEAVRKVVGEGKAVLFHCNAGASRSATLLLLTLLQLHPELPLPTLFKRVQAKRPIILPQFH 342
            G+ Y  +P    AT  +++ + +   EV E + +    GK VL HC AG SRSAT+++ +L++ H  + +   +K V+++RP++ P  +
Sbjct:  768 GLRYXRLP----ATDNSKQNLRQYFEEVFEFIEEAYQSGKGVLVHCQAGVSRSATIVIASLMK-HTLMTMTDAYKYVRSRRPVVSPNLN 851
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BLAST of mRNA_M-pyrifera_M_contig89975.20850.1 vs. uniprot
Match: UPI00145BE01E (dual specificity protein phosphatase 10-like n=4 Tax=Acipenseroidei TaxID=186622 RepID=UPI00145BE01E)

HSP 1 Score: 50.4 bits (119), Expect = 8.710e-5
Identity = 33/115 (28.70%), Postives = 60/115 (52.17%), Query Frame = 1 
Query:    1 EGLGKDGVSLIVSCIPSVSFAFEDRGM-EYVHVPIGDFATRMNEEVIEEKLGEVVEAVRKVVGEGKAVLFHCNAGASRSATLLLLTLLQLHPELPLPTLFKRVQAKRPIILPQFH 342
            E + K  ++ I++    +     D+G+  Y  +P    AT  N++ + +   E  E + +    GK +L HC AG SRSAT+++  L++ H  + +   +K V+ +RPII P  +
Sbjct:  330 EKVQKMNIAYIINVTTHLPLFHYDKGIFNYKRLP----ATDSNKQNLRQYFEEAFEFIEEAHQSGKGLLIHCQAGVSRSATIVIAYLMK-HTRMTMTDAYKFVKTRRPIISPNLN 439
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BLAST of mRNA_M-pyrifera_M_contig89975.20850.1 vs. uniprot
Match: A0A8C4SUX7_ERPCA (Dual specificity phosphatase 10 n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4SUX7_ERPCA)

HSP 1 Score: 50.4 bits (119), Expect = 8.720e-5
Identity = 30/95 (31.58%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:   58 FAFEDRGMEYVHVPIGDFATRMNEEVIEEKLGEVVEAVRKVVGEGKAVLFHCNAGASRSATLLLLTLLQLHPELPLPTLFKRVQAKRPIILPQFH 342
            F +E   + Y  +P    AT  N++ + +   E  E + +   +GK +L HC AG SRSAT+++  L++ H  + +   +K V+ +RPII P  +
Sbjct:  354 FHYEKGILNYKRLP----ATDSNKQNLRQYFEEAFEFIEEAQQDGKGLLIHCQAGVSRSATIVIAYLMK-HTRMTMTDAYKFVKTRRPIISPNLN 443
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BLAST of mRNA_M-pyrifera_M_contig89975.20850.1 vs. uniprot
Match: A0A7L4MXB0_9AVES (Protein-tyrosine-phosphatase (Fragment) n=1 Tax=Ceyx cyanopectus TaxID=390723 RepID=A0A7L4MXB0_9AVES)

HSP 1 Score: 48.5 bits (114), Expect = 9.590e-5
Identity = 30/95 (31.58%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:   58 FAFEDRGMEYVHVPIGDFATRMNEEVIEEKLGEVVEAVRKVVGEGKAVLFHCNAGASRSATLLLLTLLQLHPELPLPTLFKRVQAKRPIILPQFH 342
            + +E   + Y  +P    AT  N++ + +   E  E + +    GK +L HC AG SRSAT+++  L++ H  + +   +K V+ KRPII P  +
Sbjct:   29 YHYEKGFLNYKRLP----ATDSNKQNLRQYFEEAFEFIEEAQQCGKGLLIHCQAGVSRSATIVIAYLMK-HTRMTMTDAYKFVKGKRPIISPNLN 118
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89975.20850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
S4RLF7_PETMA6.380e-628.70Dual specificity phosphatase 10 n=1 Tax=Petromyzon... [more]
A0A1L8G644_XENLA1.350e-531.30dual specificity protein phosphatase 10 n=3 Tax=Xe... [more]
A0A444UPX2_ACIRT5.240e-528.70Protein-tyrosine-phosphatase n=1 Tax=Acipenser rut... [more]
A0A2I4BVY3_9TELE6.810e-531.46uncharacterized protein LOC106523125 n=2 Tax=Rivul... [more]
UPI00145BE01E8.710e-528.70dual specificity protein phosphatase 10-like n=4 T... [more]
A0A8C4SUX7_ERPCA8.720e-531.58Dual specificity phosphatase 10 n=2 Tax=Polypterid... [more]
A0A7L4MXB0_9AVES9.590e-531.58Protein-tyrosine-phosphatase (Fragment) n=1 Tax=Ce... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89975contigM-pyrifera_M_contig89975:249..596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816810.3373234-CDS-M-pyrifera_M_contig89975:248..5961622816810.3373234-CDS-M-pyrifera_M_contig89975:248..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89975 249..596 +
1692278191.9208772-CDS-M-pyrifera_M_contig89975:248..5961692278191.9208772-CDS-M-pyrifera_M_contig89975:248..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89975 249..596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89975.20850.1prot_M-pyrifera_M_contig89975.20850.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89975 249..596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89975.20850.1

>prot_M-pyrifera_M_contig89975.20850.1 ID=prot_M-pyrifera_M_contig89975.20850.1|Name=mRNA_M-pyrifera_M_contig89975.20850.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
EGLGKDGVSLIVSCIPSVSFAFEDRGMEYVHVPIGDFATRMNEEVIEEKL
GEVVEAVRKVVGEGKAVLFHCNAGASRSATLLLLTLLQLHPELPLPTLFK
RVQAKRPIILPQFHAL
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mRNA from alignment at M-pyrifera_M_contig89975:249..596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89975.20850.1 ID=mRNA_M-pyrifera_M_contig89975.20850.1|Name=mRNA_M-pyrifera_M_contig89975.20850.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig89975:249..596+ (Macrocystis pyrifera P11B4 male)
GAAGGGTTGGGGAAAGATGGCGTCTCCCTGATCGTCTCCTGCATCCCTTC
GGTGAGTTTTGCGTTCGAGGACAGAGGCATGGAGTACGTGCATGTGCCGA
TTGGCGACTTTGCGACGCGAATGAACGAGGAAGTGATCGAAGAGAAGTTG
GGCGAAGTCGTGGAGGCTGTGAGAAAGGTGGTTGGAGAAGGAAAGGCAGT
ATTGTTCCACTGCAATGCAGGAGCAAGTCGCTCCGCCACCCTCCTGCTCC
TCACACTCCTGCAACTCCACCCCGAACTACCCCTCCCAACACTCTTCAAA
CGAGTGCAAGCGAAACGACCCATCATCCTGCCGCAGTTTCATGCGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89975:249..596+

>mRNA_M-pyrifera_M_contig89975.20850.1 ID=mRNA_M-pyrifera_M_contig89975.20850.1|Name=mRNA_M-pyrifera_M_contig89975.20850.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig89975:249..596+ (Macrocystis pyrifera P11B4 male)
GAAGGGTTGGGGAAAGATGGCGTCTCCCTGATCGTCTCCTGCATCCCTTC
GGTGAGTTTTGCGTTCGAGGACAGAGGCATGGAGTACGTGCATGTGCCGA
TTGGCGACTTTGCGACGCGAATGAACGAGGAAGTGATCGAAGAGAAGTTG
GGCGAAGTCGTGGAGGCTGTGAGAAAGGTGGTTGGAGAAGGAAAGGCAGT
ATTGTTCCACTGCAATGCAGGAGCAAGTCGCTCCGCCACCCTCCTGCTCC
TCACACTCCTGCAACTCCACCCCGAACTACCCCTCCCAACACTCTTCAAA
CGAGTGCAAGCGAAACGACCCATCATCCTGCCGCAGTTTCATGCGCTCGA
AGGGTTGGGGAAAGATGGCGTCTCCCTGATCGTCTCCTGCATCCCTTCGG
TGAGTTTTGCGTTCGAGGACAGAGGCATGGAGTACGTGCATGTGCCGATT
GGCGACTTTGCGACGCGAATGAACGAGGAAGTGATCGAAGAGAAGTTGGG
CGAAGTCGTGGAGGCTGTGAGAAAGGTGGTTGGAGAAGGAAAGGCAGTAT
TGTTCCACTGCAATGCAGGAGCAAGTCGCTCCGCCACCCTCCTGCTCCTC
ACACTCCTGCAACTCCACCCCGAACTACCCCTCCCAACACTCTTCAAACG
AGTGCAAGCGAAACGACCCATCATCCTGCCGCAGTTTCATGCGCTC
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