mRNA_M-pyrifera_M_contig89961.20846.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89961.20846.1
Unique NamemRNA_M-pyrifera_M_contig89961.20846.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig89961.20846.1 vs. uniprot
Match: A0A2G9TWQ8_TELCI (Helicase protein n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9TWQ8_TELCI)

HSP 1 Score: 168 bits (425), Expect = 3.570e-51
Identity = 75/110 (68.18%), Postives = 98/110 (89.09%), Query Frame = 1 
Query:    1 LRHVLSYGIGMHHAGLAESDRSLVEKLFLENKIQLLVSTSTLAWGVNLPAHLVVVKGTEYFDAKECKYVDFPITDLLQMVGRAGRPQFDTEAVAVVLVEESKKNFYKKFL 330
            L+  L +GIGMHHAGL+ ++R++VE+LFLE KIQ+L++T+TLAWG+N+PAHLV+VKGTEYFD K  KYVD+P+TD+LQM+GRAGRPQFDT AVAV+ V++ KK FYK+FL
Sbjct:   16 LKLTLPFGIGMHHAGLSSNERAIVEQLFLEKKIQVLIATATLAWGINMPAHLVIVKGTEYFDGKTSKYVDYPVTDVLQMMGRAGRPQFDTSAVAVIYVQDIKKTFYKRFL 125
[Close]
BLAST of mRNA_M-pyrifera_M_contig89961.20846.1 vs. uniprot
Match: A0A7S0BU33_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BU33_9RHOD)

HSP 1 Score: 168 bits (425), Expect = 1.780e-50
Identity = 79/110 (71.82%), Postives = 95/110 (86.36%), Query Frame = 1 
Query:    1 LRHVLSYGIGMHHAGLAESDRSLVEKLFLENKIQLLVSTSTLAWGVNLPAHLVVVKGTEYFDAKECKYVDFPITDLLQMVGRAGRPQFDTEAVAVVLVEESKKNFYKKFL 330
            LR  L +G+GMHHAGLAESDR++VE LF   +IQ+L+STSTLAWGVNLPAHLVV+KGTE+FDAK+ +YVD P+TD+LQM+GRAGRPQFD  A AV+LV E +K FYKKFL
Sbjct:   72 LRQALEFGVGMHHAGLAESDRAMVEALFASAEIQVLISTSTLAWGVNLPAHLVVLKGTEFFDAKQHRYVDMPLTDVLQMIGRAGRPQFDDRAFAVLLVHEPRKGFYKKFL 181
[Close]
BLAST of mRNA_M-pyrifera_M_contig89961.20846.1 vs. uniprot
Match: A0A7S1FRB3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRB3_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.860e-50
Identity = 80/110 (72.73%), Postives = 98/110 (89.09%), Query Frame = 1 
Query:    1 LRHVLSYGIGMHHAGLAESDRSLVEKLFLENKIQLLVSTSTLAWGVNLPAHLVVVKGTEYFDAKECKYVDFPITDLLQMVGRAGRPQFDTEAVAVVLVEESKKNFYKKFL 330
            LRHV S+G+G+HHAGL+  DR   E+LFL   +++LV+T+TLAWGVNLPAHLV+VKGTEYFD K  +YVD+P+TD+LQM+GRAGRPQFDTEAVAVV+VEESK+NFYKKFL
Sbjct:  129 LRHVSSFGVGLHHAGLSAGDREATERLFLRGDLRVLVATATLAWGVNLPAHLVIVKGTEYFDGKSGRYVDYPVTDVLQMMGRAGRPQFDTEAVAVVMVEESKRNFYKKFL 238
[Close]
BLAST of mRNA_M-pyrifera_M_contig89961.20846.1 vs. uniprot
Match: J9EGL4_WUCBA (Helicase C-terminal domain-containing protein n=1 Tax=Wuchereria bancrofti TaxID=6293 RepID=J9EGL4_WUCBA)

HSP 1 Score: 166 bits (421), Expect = 2.160e-50
Identity = 73/110 (66.36%), Postives = 97/110 (88.18%), Query Frame = 1 
Query:    1 LRHVLSYGIGMHHAGLAESDRSLVEKLFLENKIQLLVSTSTLAWGVNLPAHLVVVKGTEYFDAKECKYVDFPITDLLQMVGRAGRPQFDTEAVAVVLVEESKKNFYKKFL 330
            L+  L +G+GMHHAGL + +RS+VE+LF+E KIQ++V+T+TLAWG+N+PAHLV+VKGTEY+D K  KY+DFP+TD+LQM+GRAGRPQFD  AVAV+ V++ KKNFYK+FL
Sbjct:   71 LKLTLPFGVGMHHAGLQQHERSIVERLFVEKKIQVMVATATLAWGINMPAHLVIVKGTEYYDGKTHKYIDFPVTDVLQMIGRAGRPQFDDSAVAVIYVQDIKKNFYKRFL 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig89961.20846.1 vs. uniprot
Match: A0A843UZQ9_COLES (Helicase C-terminal domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UZQ9_COLES)

HSP 1 Score: 172 bits (437), Expect = 2.240e-50
Identity = 81/110 (73.64%), Postives = 95/110 (86.36%), Query Frame = 1 
Query:    1 LRHVLSYGIGMHHAGLAESDRSLVEKLFLENKIQLLVSTSTLAWGVNLPAHLVVVKGTEYFDAKECKYVDFPITDLLQMVGRAGRPQFDTEAVAVVLVEESKKNFYKKFL 330
            LRH L +GIG+HHAGL + DRSLVE+LF  NKIQ+LVSTSTLAWGVNLPAHLV++KGTEY+D K  +Y+DFPITD+LQM+GRAGRPQFD    AV+LV E KK+FYKKFL
Sbjct:  142 LRHTLQFGIGLHHAGLNDKDRSLVEELFGNNKIQVLVSTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYIDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFL 251
[Close]
BLAST of mRNA_M-pyrifera_M_contig89961.20846.1 vs. uniprot
Match: A0A7S3C3B9_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C3B9_9VIRI)

HSP 1 Score: 172 bits (437), Expect = 4.240e-50
Identity = 80/110 (72.73%), Postives = 97/110 (88.18%), Query Frame = 1 
Query:    1 LRHVLSYGIGMHHAGLAESDRSLVEKLFLENKIQLLVSTSTLAWGVNLPAHLVVVKGTEYFDAKECKYVDFPITDLLQMVGRAGRPQFDTEAVAVVLVEESKKNFYKKFL 330
            LRH L +GIG+HHAGL E+DR LVE+LFLE K+Q+LVSTSTLAWGVNLPAHLV+VKGTE++D    +YVDFPITD+LQM+GRAGRPQFDT  VAV++V E KK++YK+FL
Sbjct:  308 LRHTLQFGIGLHHAGLKEADRKLVERLFLECKVQVLVSTSTLAWGVNLPAHLVIVKGTEFYDGARRQYVDFPITDVLQMMGRAGRPQFDTRGVAVIMVHEPKKSYYKRFL 417
[Close]
BLAST of mRNA_M-pyrifera_M_contig89961.20846.1 vs. uniprot
Match: A0A0B1SGV1_OESDE (Helicase protein (Fragment) n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1SGV1_OESDE)

HSP 1 Score: 169 bits (427), Expect = 4.830e-50
Identity = 75/110 (68.18%), Postives = 98/110 (89.09%), Query Frame = 1 
Query:    1 LRHVLSYGIGMHHAGLAESDRSLVEKLFLENKIQLLVSTSTLAWGVNLPAHLVVVKGTEYFDAKECKYVDFPITDLLQMVGRAGRPQFDTEAVAVVLVEESKKNFYKKFL 330
            L+  L +GIGMHHAGL+  +R+LVE+L++E KIQ+L++T+TLAWG+N+PAHLV+VKGTEY+D K CKYVDFP+TD+LQM+GRAGRPQFDT AVAV+ V++ KK FYK+FL
Sbjct:   28 LKLTLPFGIGMHHAGLSPHERALVEELYVEKKIQVLIATATLAWGINMPAHLVIVKGTEYYDGKICKYVDFPVTDVLQMMGRAGRPQFDTSAVAVIFVQDVKKTFYKRFL 137
[Close]
BLAST of mRNA_M-pyrifera_M_contig89961.20846.1 vs. uniprot
Match: A0A7S1UKF8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKF8_9STRA)

HSP 1 Score: 174 bits (440), Expect = 8.980e-50
Identity = 84/110 (76.36%), Postives = 95/110 (86.36%), Query Frame = 1 
Query:    1 LRHVLSYGIGMHHAGLAESDRSLVEKLFLENKIQLLVSTSTLAWGVNLPAHLVVVKGTEYFDAKECKYVDFPITDLLQMVGRAGRPQFDTEAVAVVLVEESKKNFYKKFL 330
            L H+L +G+GMHHAGL  SDR LVE+LF E KIQ+LV T+TLAWGVNLPAHLVVVKGTEYFDA   KYVDF ITD+LQM+GRAGRPQ+D +AVA + VEESKKNFYKKFL
Sbjct:  145 LAHLLRFGVGMHHAGLENSDRDLVERLFTERKIQILVCTATLAWGVNLPAHLVVVKGTEYFDATLKKYVDFEITDVLQMIGRAGRPQYDDKAVACIFVEESKKNFYKKFL 254
[Close]
BLAST of mRNA_M-pyrifera_M_contig89961.20846.1 vs. uniprot
Match: A0A7S0H2E6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H2E6_9EUKA)

HSP 1 Score: 174 bits (442), Expect = 1.190e-49
Identity = 83/110 (75.45%), Postives = 97/110 (88.18%), Query Frame = 1 
Query:    1 LRHVLSYGIGMHHAGLAESDRSLVEKLFLENKIQLLVSTSTLAWGVNLPAHLVVVKGTEYFDAKECKYVDFPITDLLQMVGRAGRPQFDTEAVAVVLVEESKKNFYKKFL 330
            L+H+L++GIG+HHAG+  SDR +VE LF+E KIQ+LV+TSTLAWGVN PAHLVVVKGTEYFDAK  +YVD PITD+LQM+GRAGRPQFDT  VA VLV+ESKKNFY KFL
Sbjct:  451 LKHMLAFGIGLHHAGMLPSDRKVVENLFIEQKIQVLVATSTLAWGVNFPAHLVVVKGTEYFDAKAGRYVDMPITDVLQMMGRAGRPQFDTTGVACVLVQESKKNFYHKFL 560
[Close]
BLAST of mRNA_M-pyrifera_M_contig89961.20846.1 vs. uniprot
Match: UPI000644B0CE (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B0CE)

HSP 1 Score: 178 bits (451), Expect = 1.270e-49
Identity = 82/110 (74.55%), Postives = 99/110 (90.00%), Query Frame = 1 
Query:    1 LRHVLSYGIGMHHAGLAESDRSLVEKLFLENKIQLLVSTSTLAWGVNLPAHLVVVKGTEYFDAKECKYVDFPITDLLQMVGRAGRPQFDTEAVAVVLVEESKKNFYKKFL 330
            L+H LS+GIGMHHAGL ++DR++VE+LF ENKIQ+L+STSTLAWGVNLPAHLV++KGTEYFD K  +YVDFP+TD+LQM+GRAGRPQFD E  AV++V E KKNFYKKFL
Sbjct: 1584 LKHTLSFGIGMHHAGLNDNDRTIVERLFGENKIQVLISTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMMGRAGRPQFDKEGKAVIMVHEPKKNFYKKFL 1693
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89961.20846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G9TWQ8_TELCI3.570e-5168.18Helicase protein n=1 Tax=Teladorsagia circumcincta... [more]
A0A7S0BU33_9RHOD1.780e-5071.82Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S1FRB3_9STRA1.860e-5072.73Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
J9EGL4_WUCBA2.160e-5066.36Helicase C-terminal domain-containing protein n=1 ... [more]
A0A843UZQ9_COLES2.240e-5073.64Helicase C-terminal domain-containing protein n=1 ... [more]
A0A7S3C3B9_9VIRI4.240e-5072.73Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A0B1SGV1_OESDE4.830e-5068.18Helicase protein (Fragment) n=1 Tax=Oesophagostomu... [more]
A0A7S1UKF8_9STRA8.980e-5076.36Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S0H2E6_9EUKA1.190e-4975.45Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
UPI000644B0CE1.270e-4974.55hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89961contigM-pyrifera_M_contig89961:205..534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score162.9
Seed ortholog evalue7.6e-38
Seed eggNOG ortholog7230.FBpp0172442
KEGG koko:K18663
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0003674,GO:0003824,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019219,GO:0019222,GO:0030532,GO:0031323,GO:0032991,GO:0034330,GO:0034332,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045216,GO:0046483,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051179,GO:0051252,GO:0051640,GO:0051641,GO:0051642,GO:0060255,GO:0061842,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097525,GO:0120114,GO:1901360,GO:1903311,GO:1990904
EggNOG free text desc.nucleic acid binding
EggNOG OGs38CPH@33154,3B9XK@33208,3D8Z8@33213,3SI4X@50557,41WZ8@6656,44ZJJ@7147,45RHJ@7214,COG1204@1,KOG0952@2759
EC3.6.4.12
COG Functional cat.A
Best tax levelDrosophilidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons1
Model size330
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816810.1852076-UTR-M-pyrifera_M_contig89961:204..2341622816810.1852076-UTR-M-pyrifera_M_contig89961:204..234Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89961 205..234 +
1692278191.8444498-UTR-M-pyrifera_M_contig89961:204..2341692278191.8444498-UTR-M-pyrifera_M_contig89961:204..234Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89961 205..234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816810.196972-CDS-M-pyrifera_M_contig89961:234..5341622816810.196972-CDS-M-pyrifera_M_contig89961:234..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89961 235..534 +
1692278191.8589034-CDS-M-pyrifera_M_contig89961:234..5341692278191.8589034-CDS-M-pyrifera_M_contig89961:234..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89961 235..534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89961.20846.1prot_M-pyrifera_M_contig89961.20846.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89961 235..534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89961.20846.1

>prot_M-pyrifera_M_contig89961.20846.1 ID=prot_M-pyrifera_M_contig89961.20846.1|Name=mRNA_M-pyrifera_M_contig89961.20846.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MHHAGLAESDRSLVEKLFLENKIQLLVSTSTLAWGVNLPAHLVVVKGTEY
FDAKECKYVDFPITDLLQMVGRAGRPQFDTEAVAVVLVEESKKNFYKKFL
back to top

mRNA from alignment at M-pyrifera_M_contig89961:205..534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89961.20846.1 ID=mRNA_M-pyrifera_M_contig89961.20846.1|Name=mRNA_M-pyrifera_M_contig89961.20846.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig89961:205..534+ (Macrocystis pyrifera P11B4 male)
CTGCGCCACGTGCTGAGCTACGGCATTGGCATGCACCACGCAGGCCTTGC
AGAGAGCGACCGCTCGCTCGTGGAGAAGCTCTTCCTGGAGAACAAGATCC
AGCTGTTGGTGAGCACCTCCACGCTCGCCTGGGGAGTGAACCTTCCCGCA
CACTTGGTGGTGGTGAAGGGCACGGAGTACTTCGACGCCAAGGAGTGCAA
GTACGTGGACTTTCCCATCACAGATCTCCTGCAGATGGTGGGCAGGGCTG
GCCGGCCGCAGTTCGACACCGAGGCCGTCGCTGTGGTGCTCGTCGAGGAG
AGCAAGAAGAACTTCTACAAGAAGTTCCTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig89961:205..534+

>mRNA_M-pyrifera_M_contig89961.20846.1 ID=mRNA_M-pyrifera_M_contig89961.20846.1|Name=mRNA_M-pyrifera_M_contig89961.20846.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig89961:205..534+ (Macrocystis pyrifera P11B4 male)
ATGCACCACGCAGGCCTTGCAGAGAGCGACCGCTCGCTCGTGGAGAAGCT
CTTCCTGGAGAACAAGATCCAGCTGTTGGTGAGCACCTCCACGCTCGCCT
GGGGAGTGAACCTTCCCGCACACTTGGTGGTGGTGAAGGGCACGGAGTAC
TTCGACGCCAAGGAGTGCAAGTACGTGGACTTTCCCATCACAGATCTCCT
GCAGATGGTGGGCAGGGCTGGCCGGCCGCAGTTCGACACCGAGGCCGTCG
CTGTGGTGCTCGTCGAGGAGAGCAAGAAGAACTTCTACAAGAAGTTCCTT
ATGCACCACGCAGGCCTTGCAGAGAGCGACCGCTCGCTCGTGGAGAAGCT
CTTCCTGGAGAACAAGATCCAGCTGTTGGTGAGCACCTCCACGCTCGCCT
GGGGAGTGAACCTTCCCGCACACTTGGTGGTGGTGAAGGGCACGGAGTAC
TTCGACGCCAAGGAGTGCAAGTACGTGGACTTTCCCATCACAGATCTCCT
GCAGATGGTGGGCAGGGCTGGCCGGCCGCAGTTCGACACCGAGGCCGTCG
CTGTGGTGCTCGTCGAGGAGAGCAAGAAGAACTTCTACAAGAAGTTCCTT
back to top