mRNA_M-pyrifera_M_contig109969.2084.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109969.2084.1
Unique NamemRNA_M-pyrifera_M_contig109969.2084.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109969.2084.1 vs. uniprot
Match: F2U695_SALR5 (Non-specific serine/threonine protein kinase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U695_SALR5)

HSP 1 Score: 57.8 bits (138), Expect = 3.830e-8
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   22 ETWWEPHVRPGEKVLMFGIVGKKRGVFSLVHDRLLVLTDAPRLFYLDHERQEFKSDIPW 198
            E+ W   +  GE ++  G+V K+RG+FS    R L+LTD PRL Y+D E  E K +IPW
Sbjct:  409 ESPWHSFLNEGELIIKTGLVDKRRGLFS--KRRQLILTDTPRLIYIDPEALEIKGEIPW 465          
BLAST of mRNA_M-pyrifera_M_contig109969.2084.1 vs. uniprot
Match: A0A7S3H2H6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H2H6_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 8.210e-7
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   31 WEPHVRPGEKVLMFGIVGKKRGVFSLVHDRLLVLTDAPRLFYLDHERQEFKSDIPW 198
            WE  ++  E+ +  G++ K++G+FS    R L+LTD PRL Y+D +  E+K +IPW
Sbjct:  109 WEVFLKAPERRVFTGLIYKRKGLFS--KKRQLILTDHPRLLYVDPDTMEYKGEIPW 162          
BLAST of mRNA_M-pyrifera_M_contig109969.2084.1 vs. uniprot
Match: A0A1X7VVY1_AMPQE (3-phosphoinositide-dependent protein kinase 1 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VVY1_AMPQE)

HSP 1 Score: 53.9 bits (128), Expect = 8.730e-7
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 1
Query:   31 WEPHVRPGEKVLMFGIVGKKRGVFSLVHDRLLVLTDAPRLFYLDHERQEFKSDIPW 198
            W P V  GE ++  G+V K++G+FS    R L+LTDAPRL+Y+D      K +IPW
Sbjct:  375 WHPFVN-GELIIKTGLVDKRKGMFS--KRRQLILTDAPRLYYVDPVAMVLKGEIPW 427          
BLAST of mRNA_M-pyrifera_M_contig109969.2084.1 vs. uniprot
Match: A0A8H4A4T2_GIGMA (Non-specific serine/threonine protein kinase n=2 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4A4T2_GIGMA)

HSP 1 Score: 52.4 bits (124), Expect = 3.070e-6
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 1
Query:   31 WEPHVRPGEKVLMFGIVGKKRGVFSLVHDRLLVLTDAPRLFYLDHERQEFKSDIPW 198
            W P +   E ++  G + K++G+FS    RLL+LTD PRL Y+D E+ E K +I W
Sbjct:  424 WIPFLLKSELIIRAGPINKRKGLFS--KKRLLILTDFPRLIYVDQEKMEQKGEIYW 477          
BLAST of mRNA_M-pyrifera_M_contig109969.2084.1 vs. uniprot
Match: A0A433AD41_9FUNG (PH_3 domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433AD41_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 7.180e-6
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 1
Query:   31 WEPHVRPGEKVLMFGIVGKKRGVFSLVHDRLLVLTDAPRLFYLDHERQEFKSDIPW 198
            W   ++  E +L  G V K++G+FS    R+L+LTD PRLFY+D E+   K +I W
Sbjct:  183 WASFLQQNELILRAGPVHKRKGLFS--KKRVLILTDQPRLFYVDQEKMVKKGEIDW 236          
BLAST of mRNA_M-pyrifera_M_contig109969.2084.1 vs. uniprot
Match: A0A433Q681_9FUNG (Non-specific serine/threonine protein kinase n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q681_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 7.920e-6
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 1
Query:   31 WEPHVRPGEKVLMFGIVGKKRGVFSLVHDRLLVLTDAPRLFYLDHERQEFKSDIPW 198
            W   ++  E +L  G V K++G+FS    R+L+LTD PRLFY+D E+   K +I W
Sbjct:  580 WASFLQQNELILRAGPVHKRKGLFS--KKRVLILTDQPRLFYVDQEKMVKKGEIDW 633          
BLAST of mRNA_M-pyrifera_M_contig109969.2084.1 vs. uniprot
Match: PDPKA_DICDI (Probable serine/threonine-protein kinase pdkA n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=PDPKA_DICDI)

HSP 1 Score: 50.8 bits (120), Expect = 1.080e-5
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 1
Query:   52 GEKVLMFGIVGKKRGVFSLVHDRLLVLTDAPRLFYLDHERQEFKSDIPW 198
            GE V+  G+V K++G FS +  R L+LTD PRL Y+D ++ E K +IPW
Sbjct:  590 GENVIYQGLVWKRKG-FS-IKKRQLILTDTPRLIYIDPKKMELKGEIPW 636          
BLAST of mRNA_M-pyrifera_M_contig109969.2084.1 vs. uniprot
Match: A0A1Y2I3E6_9FUNG (Non-specific serine/threonine protein kinase n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2I3E6_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 2.020e-5
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 1
Query:   55 EKVLMFGIVGKKRGVFSLVHDRLLVLTDAPRLFYLDHERQEFKSDIPW 198
            E +L  G V K++G+FS    R LVLTD PRL Y+D +++  K +IPW
Sbjct:  488 EVILRSGFVHKRKGLFS--KKRFLVLTDTPRLIYIDADKKVVKGEIPW 533          
BLAST of mRNA_M-pyrifera_M_contig109969.2084.1 vs. uniprot
Match: F0ZSM2_DICPU (Non-specific serine/threonine protein kinase n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZSM2_DICPU)

HSP 1 Score: 49.3 bits (116), Expect = 3.760e-5
Identity = 23/56 (41.07%), Postives = 35/56 (62.50%), Query Frame = 1
Query:   31 WEPHVRPGEKVLMFGIVGKKRGVFSLVHDRLLVLTDAPRLFYLDHERQEFKSDIPW 198
            W   +   E ++  G+V K++G FS +  R L+LTD PRL Y+D ++ E K +IPW
Sbjct:  406 WSNLINKDETIVCQGLVWKRKG-FS-IKKRQLILTDTPRLIYIDPKKMEVKGEIPW 459          
BLAST of mRNA_M-pyrifera_M_contig109969.2084.1 vs. uniprot
Match: A0A8H7RK41_9FUNG (Non-specific serine/threonine protein kinase n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7RK41_9FUNG)

HSP 1 Score: 49.3 bits (116), Expect = 3.770e-5
Identity = 29/72 (40.28%), Postives = 40/72 (55.56%), Query Frame = 1
Query:    1 LPSSLWAETWWEPHVRPGEKVLMFGIVGKKRGVFSLVHDRLLVLTDAPRLFYLDH--ERQEF----KSDIPW 198
            +P  L     W PH+ P E V+  G V ++RG  S    R LVLT+ PRL YLD   E+++F    + +IPW
Sbjct:  436 VPERLGLHPAWIPHLYPNESVIKAGRVTRRRGFIS--KKRNLVLTNRPRLLYLDQGTEKEKFDGHLRCEIPW 505          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109969.2084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
F2U695_SALR53.830e-845.76Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S3H2H6_9STRA8.210e-741.07Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A1X7VVY1_AMPQE8.730e-746.433-phosphoinositide-dependent protein kinase 1 n=1 ... [more]
A0A8H4A4T2_GIGMA3.070e-642.86Non-specific serine/threonine protein kinase n=2 T... [more]
A0A433AD41_9FUNG7.180e-642.86PH_3 domain-containing protein n=1 Tax=Jimgerdeman... [more]
A0A433Q681_9FUNG7.920e-642.86Non-specific serine/threonine protein kinase n=1 T... [more]
PDPKA_DICDI1.080e-548.98Probable serine/threonine-protein kinase pdkA n=1 ... [more]
A0A1Y2I3E6_9FUNG2.020e-547.92Non-specific serine/threonine protein kinase n=1 T... [more]
F0ZSM2_DICPU3.760e-541.07Non-specific serine/threonine protein kinase n=1 T... [more]
A0A8H7RK41_9FUNG3.770e-540.28Non-specific serine/threonine protein kinase n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109969contigM-pyrifera_M_contig109969:361..558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.2277677-CDS-M-pyrifera_M_contig109969:360..5581622815610.2277677-CDS-M-pyrifera_M_contig109969:360..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109969 361..558 +
1692277486.2662647-CDS-M-pyrifera_M_contig109969:360..5581692277486.2662647-CDS-M-pyrifera_M_contig109969:360..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109969 361..558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109969.2084.1prot_M-pyrifera_M_contig109969.2084.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109969 361..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109969.2084.1

>prot_M-pyrifera_M_contig109969.2084.1 ID=prot_M-pyrifera_M_contig109969.2084.1|Name=mRNA_M-pyrifera_M_contig109969.2084.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
LPSSLWAETWWEPHVRPGEKVLMFGIVGKKRGVFSLVHDRLLVLTDAPRL
FYLDHERQEFKSDIPW
back to top

mRNA from alignment at M-pyrifera_M_contig109969:361..558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109969.2084.1 ID=mRNA_M-pyrifera_M_contig109969.2084.1|Name=mRNA_M-pyrifera_M_contig109969.2084.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig109969:361..558+ (Macrocystis pyrifera P11B4 male)
CTTCCTTCCTCGCTATGGGCAGAAACGTGGTGGGAACCACATGTAAGGCC TGGAGAAAAAGTGTTGATGTTTGGCATTGTTGGAAAGAAGAGGGGAGTGT TTTCTCTTGTCCACGACCGATTGCTCGTACTCACCGACGCACCACGGTTG TTTTACCTTGACCATGAACGACAGGAGTTTAAATCAGATATTCCGTGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig109969:361..558+

>mRNA_M-pyrifera_M_contig109969.2084.1 ID=mRNA_M-pyrifera_M_contig109969.2084.1|Name=mRNA_M-pyrifera_M_contig109969.2084.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig109969:361..558+ (Macrocystis pyrifera P11B4 male)
CTTCCTTCCTCGCTATGGGCAGAAACGTGGTGGGAACCACATGTAAGGCC
TGGAGAAAAAGTGTTGATGTTTGGCATTGTTGGAAAGAAGAGGGGAGTGT
TTTCTCTTGTCCACGACCGATTGCTCGTACTCACCGACGCACCACGGTTG
TTTTACCTTGACCATGAACGACAGGAGTTTAAATCAGATATTCCGTGGCT
TCCTTCCTCGCTATGGGCAGAAACGTGGTGGGAACCACATGTAAGGCCTG
GAGAAAAAGTGTTGATGTTTGGCATTGTTGGAAAGAAGAGGGGAGTGTTT
TCTCTTGTCCACGACCGATTGCTCGTACTCACCGACGCACCACGGTTGTT
TTACCTTGACCATGAACGACAGGAGTTTAAATCAGATATTCCGTGG
back to top