mRNA_M-pyrifera_M_contig8990.20838.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8990.20838.1
Unique NamemRNA_M-pyrifera_M_contig8990.20838.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8990.20838.1 vs. uniprot
Match: D7G5K3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5K3_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.890e-27
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 SLPPALTPELLEDSSFLQALHRVLMDMHVVEGVLICPETGRRFPIAEGVPDLM 159
            SLPPALTPELLEDSSFL+ALHRVLMDMHVVEG L+CPETGRRFPIAEGVP+LM
Sbjct:   66 SLPPALTPELLEDSSFLEALHRVLMDMHVVEGTLVCPETGRRFPIAEGVPNLM 118
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BLAST of mRNA_M-pyrifera_M_contig8990.20838.1 vs. uniprot
Match: A0A836CHT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHT2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.550e-17
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    4 LPPALTPELLEDSSFLQALHRVLMDMHVVEGVLICPETGRRFPIAEGVPDLM 159
            LP A++  LL D +FL+ALHRVLMD+HVV G L+CPE+GRRFPIA G+PD+M
Sbjct:   67 LPEAVSDALLGDEAFLRALHRVLMDVHVVAGALVCPESGRRFPIAHGIPDMM 118
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BLAST of mRNA_M-pyrifera_M_contig8990.20838.1 vs. uniprot
Match: A0A8J9S352_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S352_PHATR)

HSP 1 Score: 73.6 bits (179), Expect = 4.750e-16
Identity = 28/53 (52.83%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 SLPPALTPELLEDSSFLQALHRVLMDMHVVEGVLICPETGRRFPIAEGVPDLM 159
            +LPP LT +L+ED  FL+ALH VLM++H+++G+L CP TGR FP+ +G+P+++
Sbjct:    9 TLPPVLTEDLVEDPEFLEALHHVLMNVHLIQGILTCPATGREFPVRDGIPNMV 61
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BLAST of mRNA_M-pyrifera_M_contig8990.20838.1 vs. uniprot
Match: B8C879_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C879_THAPS)

HSP 1 Score: 72.0 bits (175), Expect = 2.700e-15
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 SLPPALTPELLEDSSFLQALHRVLMDMHVVEGVLICPETGRRFPIAEGVPDLM 159
            SLPP +TPEL +D  FL+AL+ VLMD+H+V G+L C ETGR FP+ +G+ ++M
Sbjct:   26 SLPPVVTPELAQDEGFLRALYHVLMDVHLVNGMLTCQETGREFPVTDGIVNMM 78
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BLAST of mRNA_M-pyrifera_M_contig8990.20838.1 vs. uniprot
Match: B5Y448_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y448_PHATC)

HSP 1 Score: 72.8 bits (177), Expect = 4.390e-15
Identity = 28/53 (52.83%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 SLPPALTPELLEDSSFLQALHRVLMDMHVVEGVLICPETGRRFPIAEGVPDLM 159
            +LPP LT +L ED  FL+ALH VLM++H+++G+L CP TGR FP+ +G+P+++
Sbjct:   69 TLPPVLTEDLAEDPEFLEALHHVLMNVHLIQGILTCPATGREFPVRDGIPNMV 121
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BLAST of mRNA_M-pyrifera_M_contig8990.20838.1 vs. uniprot
Match: A0A7S4NDH4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NDH4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.790e-14
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 SLPPALTPELLEDSSFLQALHRVLMDMHVVEGVLICPETGRRFPIAEGVPDLM 159
            +LPP LT EL  D  FL+AL+ VLM++H+V GVL CP+TGR FP+  GVP+ M
Sbjct:   72 TLPPTLTEELASDPVFLKALYHVLMNVHLVRGVLTCPDTGREFPVTNGVPNFM 124
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BLAST of mRNA_M-pyrifera_M_contig8990.20838.1 vs. uniprot
Match: A0A7S2NVK9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NVK9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.890e-14
Identity = 29/53 (54.72%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 SLPPALTPELLEDSSFLQALHRVLMDMHVVEGVLICPETGRRFPIAEGVPDLM 159
            SLPP LT E+++D +FLQAL+ VLM++H+V G+L CP+TGR F + +G+ D M
Sbjct:   72 SLPPNLTDEMVQDQAFLQALYHVLMNVHLVRGILTCPDTGREFAVTDGIVDFM 124
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BLAST of mRNA_M-pyrifera_M_contig8990.20838.1 vs. uniprot
Match: A0A7R9WE96_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WE96_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 6.430e-14
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 SLPPALTPELLEDSSFLQALHRVLMDMHVVEGVLICPETGRRFPIAEGVPDLM 159
            +LPP LT EL  D +FL+AL+ VLM++H+V GVL CP TG+ FP+ +GVP+ M
Sbjct:   80 TLPPTLTEELASDPAFLKALYHVLMNVHLVRGVLTCPNTGQEFPVTDGVPNFM 132
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BLAST of mRNA_M-pyrifera_M_contig8990.20838.1 vs. uniprot
Match: A0A388LY57_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LY57_CHABU)

HSP 1 Score: 69.3 bits (168), Expect = 7.920e-14
Identity = 27/52 (51.92%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    4 LPPALTPELLEDSSFLQALHRVLMDMHVVEGVLICPETGRRFPIAEGVPDLM 159
            LP    P +LED +FLQ LH VL+++++ EG L+CPETGRRFP+++G+P+++
Sbjct:   65 LPEQAEPSMLEDEAFLQKLHHVLLEVNLEEGALVCPETGRRFPVSKGIPNML 116
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BLAST of mRNA_M-pyrifera_M_contig8990.20838.1 vs. uniprot
Match: A0A176VS12_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VS12_MARPO)

HSP 1 Score: 68.2 bits (165), Expect = 2.250e-13
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    4 LPPALTPELLEDSSFLQALHRVLMDMHVVEGVLICPETGRRFPIAEGVPDLM 159
            +P  + P +LED  FLQ  H  L+++H+ EG LICPETGRRFP+ +GVP+++
Sbjct:   65 IPEQVDPTMLEDHEFLQKFHHALLEVHLEEGALICPETGRRFPVTKGVPNML 116
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8990.20838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5K3_ECTSI1.890e-2792.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHT2_9STRA1.550e-1767.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J9S352_PHATR4.750e-1652.83Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]
B8C879_THAPS2.700e-1556.60Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
B5Y448_PHATC4.390e-1552.83Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S4NDH4_9STRA3.790e-1458.49Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2NVK9_9STRA4.890e-1454.72Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7R9WE96_9STRA6.430e-1456.60Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A388LY57_CHABU7.920e-1451.92Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A176VS12_MARPO2.250e-1351.92Uncharacterized protein n=2 Tax=Marchantia polymor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8990contigM-pyrifera_M_contig8990:4716..4877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue7.8e-21
Seed eggNOG ortholog2880.D7G5K3
Preferred nameTRMT112
KEGG koko:K15448
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0009451,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0018364,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030488,GO:0031167,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0036265,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0046982,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:2000232,GO:2000234
EggNOG free text desc.peptidyl-glutamine methylation
EggNOG OGsKOG1088@1,KOG1088@2759
Ec32 ortholog descriptionUncharacterised protein family UPF0434/Trm112
Ec32 orthologEc-22_000960.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03016
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816809.7419143-CDS-M-pyrifera_M_contig8990:4715..48771622816809.7419143-CDS-M-pyrifera_M_contig8990:4715..4877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8990 4716..4877 -
1692278191.5317707-CDS-M-pyrifera_M_contig8990:4715..48771692278191.5317707-CDS-M-pyrifera_M_contig8990:4715..4877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8990 4716..4877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8990.20838.1prot_M-pyrifera_M_contig8990.20838.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8990 4716..4877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8990.20838.1

>prot_M-pyrifera_M_contig8990.20838.1 ID=prot_M-pyrifera_M_contig8990.20838.1|Name=mRNA_M-pyrifera_M_contig8990.20838.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
SLPPALTPELLEDSSFLQALHRVLMDMHVVEGVLICPETGRRFPIAEGVP
DLM*
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mRNA from alignment at M-pyrifera_M_contig8990:4716..4877-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8990.20838.1 ID=mRNA_M-pyrifera_M_contig8990.20838.1|Name=mRNA_M-pyrifera_M_contig8990.20838.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig8990:4716..4877- (Macrocystis pyrifera P11B4 male)
TCACTGCCTCCAGCTTTGACTCCCGAGCTTCTGGAAGACTCCTCTTTCCT
CCAGGCGTTGCACCGTGTGCTCATGGACATGCACGTTGTAGAAGGGGTGC
TGATTTGCCCTGAAACGGGCCGGAGGTTTCCTATCGCTGAAGGCGTGCCA
GATCTCATGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8990:4716..4877-

>mRNA_M-pyrifera_M_contig8990.20838.1 ID=mRNA_M-pyrifera_M_contig8990.20838.1|Name=mRNA_M-pyrifera_M_contig8990.20838.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig8990:4716..4877- (Macrocystis pyrifera P11B4 male)
TCACTGCCTCCAGCTTTGACTCCCGAGCTTCTGGAAGACTCCTCTTTCCT
CCAGGCGTTGCACCGTGTGCTCATGGACATGCACGTTGTAGAAGGGGTGC
TGATTTGCCCTGAAACGGGCCGGAGGTTTCCTATCGCTGAAGGCGTGCCA
GATCTCATGTGATCACTGCCTCCAGCTTTGACTCCCGAGCTTCTGGAAGA
CTCCTCTTTCCTCCAGGCGTTGCACCGTGTGCTCATGGACATGCACGTTG
TAGAAGGGGTGCTGATTTGCCCTGAAACGGGCCGGAGGTTTCCTATCGCT
GAAGGCGTGCCAGATCTCATGTGA
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