mRNA_M-pyrifera_M_contig89892.20834.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89892.20834.1
Unique NamemRNA_M-pyrifera_M_contig89892.20834.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89892.20834.1 vs. uniprot
Match: A0A3A2HYI4_9VIBR (PEP-CTERM domain-containing protein n=2 Tax=unclassified Vibrio TaxID=2614977 RepID=A0A3A2HYI4_9VIBR)

HSP 1 Score: 53.1 bits (126), Expect = 2.160e-5
Identity = 40/104 (38.46%), Postives = 51/104 (49.04%), Query Frame = 1 
Query:  193 LQYDGSEATNV-LATNGLGSVDLTVNGGIAF-------QLGLAVGIQ--EGLGASFIVTVYTNNGTQTCTWEQKLPKTDVVYHIEFQDLPSCDFTQVGAVEIII 474
            +QYDG+++  V + T GLGSVDLT+NGG AF        LG   G+Q    LGA     VYT +G  T            +  + F D    DFT V A+E  I
Sbjct:  110 IQYDGNDSDAVNIDTAGLGSVDLTLNGGDAFLLDVINTDLGFTFGVQVWSALGAETDTVVYTASGATTG-----------LAALSFSDFVGVDFTDVSAIEFTI 202
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89892.20834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3A2HYI4_9VIBR2.160e-538.46PEP-CTERM domain-containing protein n=2 Tax=unclas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89892contigM-pyrifera_M_contig89892:28..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816809.603842-CDS-M-pyrifera_M_contig89892:27..5011622816809.603842-CDS-M-pyrifera_M_contig89892:27..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89892 28..501 -
1692278191.4803636-CDS-M-pyrifera_M_contig89892:27..5011692278191.4803636-CDS-M-pyrifera_M_contig89892:27..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89892 28..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89892.20834.1prot_M-pyrifera_M_contig89892.20834.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89892 28..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89892.20834.1

>prot_M-pyrifera_M_contig89892.20834.1 ID=prot_M-pyrifera_M_contig89892.20834.1|Name=mRNA_M-pyrifera_M_contig89892.20834.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
VDDFSTLQTDLVGDRLEYNSANGNMLGGNRDMILTGDGQGSGTSEGVDEG
SWSVYGHGGNGTFSLQYDGSEATNVLATNGLGSVDLTVNGGIAFQLGLAV
GIQEGLGASFIVTVYTNNGTQTCTWEQKLPKTDVVYHIEFQDLPSCDFTQ
VGAVEIII
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mRNA from alignment at M-pyrifera_M_contig89892:28..501-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89892.20834.1 ID=mRNA_M-pyrifera_M_contig89892.20834.1|Name=mRNA_M-pyrifera_M_contig89892.20834.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig89892:28..501- (Macrocystis pyrifera P11B4 male)
GTGGACGACTTCAGTACTCTACAGACAGATCTTGTTGGAGACAGGCTCGA
GTACAACTCTGCGAATGGAAACATGCTGGGTGGGAACAGAGACATGATCC
TCACTGGCGATGGGCAGGGATCTGGGACGAGCGAGGGCGTGGACGAGGGC
AGCTGGTCTGTGTATGGCCACGGAGGGAATGGGACGTTTTCCTTGCAGTA
CGATGGCTCAGAGGCAACCAACGTGCTGGCTACGAACGGCCTGGGTAGCG
TCGACTTGACTGTGAATGGTGGCATTGCCTTCCAGCTGGGACTTGCTGTG
GGAATTCAAGAGGGACTTGGAGCAAGCTTCATAGTGACCGTCTACACCAA
CAATGGCACCCAGACCTGTACCTGGGAGCAGAAGCTACCCAAGACGGATG
TTGTGTACCACATAGAGTTCCAAGACTTGCCTTCCTGTGACTTCACGCAG
GTCGGTGCAGTGGAGATCATCATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89892:28..501-

>mRNA_M-pyrifera_M_contig89892.20834.1 ID=mRNA_M-pyrifera_M_contig89892.20834.1|Name=mRNA_M-pyrifera_M_contig89892.20834.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig89892:28..501- (Macrocystis pyrifera P11B4 male)
GTGGACGACTTCAGTACTCTACAGACAGATCTTGTTGGAGACAGGCTCGA
GTACAACTCTGCGAATGGAAACATGCTGGGTGGGAACAGAGACATGATCC
TCACTGGCGATGGGCAGGGATCTGGGACGAGCGAGGGCGTGGACGAGGGC
AGCTGGTCTGTGTATGGCCACGGAGGGAATGGGACGTTTTCCTTGCAGTA
CGATGGCTCAGAGGCAACCAACGTGCTGGCTACGAACGGCCTGGGTAGCG
TCGACTTGACTGTGAATGGTGGCATTGCCTTCCAGCTGGGACTTGCTGTG
GGAATTCAAGAGGGACTTGGAGCAAGCTTCATAGTGACCGTCTACACCAA
CAATGGCACCCAGACCTGTACCTGGGAGCAGAAGCTACCCAAGACGGATG
TTGTGTACCACATAGAGTTCCAAGACTTGCCTTCCTGTGACTTCACGCAG
GTCGGTGCAGTGGAGATCATCATTGTGGACGACTTCAGTACTCTACAGAC
AGATCTTGTTGGAGACAGGCTCGAGTACAACTCTGCGAATGGAAACATGC
TGGGTGGGAACAGAGACATGATCCTCACTGGCGATGGGCAGGGATCTGGG
ACGAGCGAGGGCGTGGACGAGGGCAGCTGGTCTGTGTATGGCCACGGAGG
GAATGGGACGTTTTCCTTGCAGTACGATGGCTCAGAGGCAACCAACGTGC
TGGCTACGAACGGCCTGGGTAGCGTCGACTTGACTGTGAATGGTGGCATT
GCCTTCCAGCTGGGACTTGCTGTGGGAATTCAAGAGGGACTTGGAGCAAG
CTTCATAGTGACCGTCTACACCAACAATGGCACCCAGACCTGTACCTGGG
AGCAGAAGCTACCCAAGACGGATGTTGTGTACCACATAGAGTTCCAAGAC
TTGCCTTCCTGTGACTTCACGCAGGTCGGTGCAGTGGAGATCATCATT
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