mRNA_M-pyrifera_M_contig89827.20825.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89827.20825.1
Unique NamemRNA_M-pyrifera_M_contig89827.20825.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89827.20825.1 vs. uniprot
Match: A0A7Y4VND6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y4VND6_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 4.710e-9
Identity = 48/134 (35.82%), Postives = 77/134 (57.46%), Query Frame = 1 
Query:   16 YNNDSDIVATATLLPTLDYINETGAT----VSV---ANGLKVGELSIRDGGGA-DTDGAGTTLDAITLQFTNPTLIQEVALFDQAYGSLLASEVSLTGAGTD------EAVFTGLSGFTASDDGTFLFSVVVTF 375
            Y+  SDIV   +L  + + +  T A     +S+   + G+++    +RDGGGA DTDG GT+L A++++ TN   ++ +ALFD    +LL  EV +  + T+      +  F+G+SGFTA D+G   F +V TF
Sbjct: 1215 YDGASDIVKDGSLGYSSNILYATTANQASPISLNDGSTGVRLERFQVRDGGGATDTDGTGTSLSAVSIRVTNYQFLKRLALFDAGTNTLL-KEVDVATSATNVSGNVADIPFSGISGFTAPDNGVRSFDLVGTF 1347
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BLAST of mRNA_M-pyrifera_M_contig89827.20825.1 vs. uniprot
Match: A0A3D5KRN5_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D5KRN5_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 3.010e-6
Identity = 44/122 (36.07%), Postives = 67/122 (54.92%), Query Frame = 1 
Query:   19 NNDSDIVATATLLPTLDYINETGAT-VSVANGLKVGELSIRDGG--GADTDGAGTTLDAITLQFTNPTLIQEVALFDQAYGSLLASEVSLTGAGTDEAVFTGLSGFTASDDGTFLFSVVVTF 375
            +N SDI+A       +DY N   A+ ++++N + +G   IRDGG    D D   T + +IT QFTNPT ++ VALFD   G+   +E + +G+      F+ L+   A D+ T  FS+  TF
Sbjct:  172 SNLSDIIANGGNSSAIDYKNFQAASGLTISNSVSLGTFVIRDGGVNANDLDNLSTEITSITFQFTNPTTLRRVALFD---GATNIAEAAASGS----VNFSSLN-LIAPDNSTKSFSLYATF 285
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89827.20825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7Y4VND6_9BACT4.710e-935.82Uncharacterized protein (Fragment) n=1 Tax=Cycloba... [more]
A0A3D5KRN5_9BACT3.010e-636.07Uncharacterized protein (Fragment) n=1 Tax=Cytopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89827contigM-pyrifera_M_contig89827:2..376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816809.2590969-CDS-M-pyrifera_M_contig89827:1..3761622816809.2590969-CDS-M-pyrifera_M_contig89827:1..376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89827 2..376 -
1692278191.2884867-CDS-M-pyrifera_M_contig89827:1..3761692278191.2884867-CDS-M-pyrifera_M_contig89827:1..376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89827 2..376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89827.20825.1prot_M-pyrifera_M_contig89827.20825.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89827 2..376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89827.20825.1

>prot_M-pyrifera_M_contig89827.20825.1 ID=prot_M-pyrifera_M_contig89827.20825.1|Name=mRNA_M-pyrifera_M_contig89827.20825.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
TTIDIYNNDSDIVATATLLPTLDYINETGATVSVANGLKVGELSIRDGGG
ADTDGAGTTLDAITLQFTNPTLIQEVALFDQAYGSLLASEVSLTGAGTDE
AVFTGLSGFTASDDGTFLFSVVVTF
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mRNA from alignment at M-pyrifera_M_contig89827:2..376-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89827.20825.1 ID=mRNA_M-pyrifera_M_contig89827.20825.1|Name=mRNA_M-pyrifera_M_contig89827.20825.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig89827:2..376- (Macrocystis pyrifera P11B4 male)
ACCACAATTGATATTTACAACAACGACTCTGATATCGTAGCAACAGCAAC
CTTGTTGCCAACACTTGATTATATTAACGAAACAGGCGCAACAGTAAGTG
TTGCAAATGGATTAAAAGTAGGAGAACTGAGTATTCGAGATGGGGGGGGA
GCTGACACTGATGGCGCTGGAACTACGCTAGACGCAATTACGCTTCAGTT
TACTAATCCAACACTGATTCAGGAAGTAGCCTTATTCGATCAGGCATACG
GCTCACTATTGGCATCAGAGGTATCTCTCACAGGTGCTGGTACAGATGAA
GCCGTGTTTACCGGATTGAGCGGATTCACAGCATCAGATGATGGTACATT
CTTGTTCAGCGTAGTAGTCACCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89827:2..376-

>mRNA_M-pyrifera_M_contig89827.20825.1 ID=mRNA_M-pyrifera_M_contig89827.20825.1|Name=mRNA_M-pyrifera_M_contig89827.20825.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig89827:2..376- (Macrocystis pyrifera P11B4 male)
ACCACAATTGATATTTACAACAACGACTCTGATATCGTAGCAACAGCAAC
CTTGTTGCCAACACTTGATTATATTAACGAAACAGGCGCAACAGTAAGTG
TTGCAAATGGATTAAAAGTAGGAGAACTGAGTATTCGAGATGGGGGGGGA
GCTGACACTGATGGCGCTGGAACTACGCTAGACGCAATTACGCTTCAGTT
TACTAATCCAACACTGATTCAGGAAGTAGCCTTATTCGATCAGGCATACG
GCTCACTATTGGCATCAGAGGTATCTCTCACAGGTGCTGGTACAGATGAA
GCCGTGTTTACCGGATTGAGCGGATTCACAGCATCAGATGATGGTACATT
CTTGTTCAGCGTAGTAGTCACCTTCACCACAATTGATATTTACAACAACG
ACTCTGATATCGTAGCAACAGCAACCTTGTTGCCAACACTTGATTATATT
AACGAAACAGGCGCAACAGTAAGTGTTGCAAATGGATTAAAAGTAGGAGA
ACTGAGTATTCGAGATGGGGGGGGAGCTGACACTGATGGCGCTGGAACTA
CGCTAGACGCAATTACGCTTCAGTTTACTAATCCAACACTGATTCAGGAA
GTAGCCTTATTCGATCAGGCATACGGCTCACTATTGGCATCAGAGGTATC
TCTCACAGGTGCTGGTACAGATGAAGCCGTGTTTACCGGATTGAGCGGAT
TCACAGCATCAGATGATGGTACATTCTTGTTCAGCGTAGTAGTCACCTTC
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