mRNA_M-pyrifera_M_contig109964.2082.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109964.2082.1
Unique NamemRNA_M-pyrifera_M_contig109964.2082.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109964.2082.1 vs. uniprot
Match: A0A3B5RFL8_XIPMA (Glyco_trans_2-like domain-containing protein n=1 Tax=Xiphophorus maculatus TaxID=8083 RepID=A0A3B5RFL8_XIPMA)

HSP 1 Score: 84.0 bits (206), Expect = 1.450e-17
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 1
Query:    4 VSIIIPVHNAASTLPDTITSILSQDYR-PLELSVFDDGSTDGSWEVLCGFEEKIRAGAYEGVSMVLSRGGGRVLVGDGDGSVGGSPGYSRNRAVAQSLGSVLVLQDADDCMLPGRI 348
            VSII+PVHNA+S L + + +I+ QD+   +ELSVFDD STD S +VL G+ E++      G+S+V+S        G G    GG  G+++N+AV QS G  L  QDADD MLP R+
Sbjct:   38 VSIIMPVHNASSWLEECLQAIMHQDFTGSMELSVFDDASTDDSRKVLEGWRERMED---RGISVVIS--------GHGSSQPGGV-GFAKNKAVTQSSGRYLCFQDADDIMLPQRV 141          
BLAST of mRNA_M-pyrifera_M_contig109964.2082.1 vs. uniprot
Match: R1DZ04_EMIHU (Glycosyl transferase, family 2 n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZ04_EMIHU)

HSP 1 Score: 85.5 bits (210), Expect = 4.840e-17
Identity = 51/116 (43.97%), Postives = 74/116 (63.79%), Query Frame = 1
Query:    4 VSIIIPVHNAASTLPDTITSILSQDYR-PLELSVFDDGSTDGSWEVLCGFEEKIRAGAYEGVSMVLSRGGGRVLVGDGDGSVGGSPGYSRNRAVAQSLGSVLVLQDADDCMLPGRI 348
            VS+++P HNAA  L + + S+L+Q YR PLE+S+FDDGS+DG+  ++  +  ++RA   + V+       G    GD     GG  G+++NRAVAQS GS+L   DADD MLP R+
Sbjct:  418 VSLVVPAHNAAWCLDEALASVLAQTYRGPLEVSIFDDGSSDGTRALIEAWIPRLRAARVDCVAS------GSRWGGDAHAEAGGI-GFAKNRAVAQSSGSLLAFLDADDVMLPRRV 526          
BLAST of mRNA_M-pyrifera_M_contig109964.2082.1 vs. uniprot
Match: A0A2I4CTI9_9TELE (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4CTI9_9TELE)

HSP 1 Score: 84.3 bits (207), Expect = 7.130e-17
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = 1
Query:    4 VSIIIPVHNAASTLPDTITSILSQDYR-PLELSVFDDGSTDGSWEVLCGFEEKIRAGAYEGVSMVLSRGGGRVLVGDGDGSVGGSPGYSRNRAVAQSLGSVLVLQDADDCMLPGRI 348
            VSII+PV+NA+  L + +  +L QD+   +ELSVFDDGSTD S EVL G+ EK++A    GV++V+S  G   L   G        GY++N+AV QS G  L  QDADD MLP R+
Sbjct:   31 VSIIMPVYNASCWLDECLRGVLHQDFTGSMELSVFDDGSTDDSREVLEGWREKLQA---RGVAVVIS--GHSFLQPRG-------VGYAKNKAVTQSYGQYLCFQDADDIMLPQRV 134          
BLAST of mRNA_M-pyrifera_M_contig109964.2082.1 vs. uniprot
Match: UPI001C3C8B35 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=UPI001C3C8B35)

HSP 1 Score: 81.6 bits (200), Expect = 9.810e-17
Identity = 51/116 (43.97%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    4 VSIIIPVHNAASTLPDTITSILSQDYR-PLELSVFDDGSTDGSWEVLCGFEEKIRAGAYEGVSMVLSRGGGRVLVGDGDGSVGGSPGYSRNRAVAQSLGSVLVLQDADDCMLPGRI 348
            VSI+IPVHNA+  L + +  I+ QDY   +ELSV+DD STDGS  ++ G+ E++      GVSMV+S           D +     G+++N+AV+QS G  L  QDADD M+P RI
Sbjct:   46 VSIVIPVHNASCWLDECLQGIVDQDYTGSMELSVYDDASTDGSRAIVEGWRERLER---RGVSMVIS---------GHDSAQPRGVGHAKNQAVSQSSGKYLCFQDADDVMMPQRI 149          
BLAST of mRNA_M-pyrifera_M_contig109964.2082.1 vs. uniprot
Match: A0A3Q2QLK5_FUNHE (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2QLK5_FUNHE)

HSP 1 Score: 82.8 bits (203), Expect = 2.580e-16
Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    1 LVSIIIPVHNAASTLPDTITSILSQDYR-PLELSVFDDGSTDGSWEVLCGFEEKIRAGAYEGVSMVLSRGGGRVLVGDGDGSVGGSPGYSRNRAVAQSLGSVLVLQDADDCMLPGRI 348
            LVS+I+PVHNA+  L + + +IL QD+   +ELS FDD STD S +VL G+ E++      G+S+V+S           + S  G  G+++N+AV QS G  L  QDADD MLP RI
Sbjct:   69 LVSVILPVHNASCWLEECLQAILDQDFTGSMELSAFDDASTDDSRKVLEGWRERMEE---RGISVVIS---------GHNASQPGGVGFAKNKAVTQSSGQYLCFQDADDIMLPQRI 173          
BLAST of mRNA_M-pyrifera_M_contig109964.2082.1 vs. uniprot
Match: UPI00165B7A8F (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X1 n=2 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165B7A8F)

HSP 1 Score: 82.4 bits (202), Expect = 3.720e-16
Identity = 52/116 (44.83%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    4 VSIIIPVHNAASTLPDTITSILSQDYR-PLELSVFDDGSTDGSWEVLCGFEEKIRAGAYEGVSMVLSRGGGRVLVGDGDGSVGGSPGYSRNRAVAQSLGSVLVLQDADDCMLPGRI 348
            VS+I+PVHNA+  L + + +IL QD+   +ELSVFDD STD S +VL G+ E++      G+S+V+S           + S  G  G+++N+AV QS G  L  QDADD MLP RI
Sbjct:   37 VSVILPVHNASCWLEECLQAILDQDFTGSMELSVFDDASTDDSRKVLEGWRERMEE---RGISVVIS---------GHNASRPGGVGFAKNKAVTQSSGQYLCFQDADDIMLPQRI 140          
BLAST of mRNA_M-pyrifera_M_contig109964.2082.1 vs. uniprot
Match: A0A315UTF8_GAMAF (Glyco_trans_2-like domain-containing protein n=1 Tax=Gambusia affinis TaxID=33528 RepID=A0A315UTF8_GAMAF)

HSP 1 Score: 82.0 bits (201), Expect = 6.180e-16
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = 1
Query:    4 VSIIIPVHNAASTLPDTITSILSQDYR-PLELSVFDDGSTDGSWEVLCGFEEKIRAGAYEGVSMVLSRGGGRVLVGDGDGSVGGSPGYSRNRAVAQSLGSVLVLQDADDCMLPGRI 348
            VSII+PVHNA+  L + + +I+ QD+   +ELSVFDD STD S +VL G+ E++      G+S+V+S        G G    GG  G+++N+AV QS G  L  QDADD MLP R+
Sbjct:   65 VSIIMPVHNASCWLEECLQAIMHQDFTGSMELSVFDDASTDDSRKVLEGWRERMED---RGISVVIS--------GHGSSQPGGV-GFAKNKAVTQSSGRYLCFQDADDIMLPQRV 168          
BLAST of mRNA_M-pyrifera_M_contig109964.2082.1 vs. uniprot
Match: UPI0018EB7B40 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 n=1 Tax=Micropterus salmoides TaxID=27706 RepID=UPI0018EB7B40)

HSP 1 Score: 79.7 bits (195), Expect = 8.430e-16
Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    4 VSIIIPVHNAASTLPDTITSILSQDYR-PLELSVFDDGSTDGSWEVLCGFEEKIRAGAYEGVSMVLSRGGGRVLVGDGDGSVGGSP---GYSRNRAVAQSLGSVLVLQDADDCMLPGRI 348
            VSI++PV+NA+  L + + +IL QD+   +ELSVFDD STD S +V+ G+ E++      GVS+V+S            G V   P   GY++N+A +QS G  L  QDADD MLP R+
Sbjct:   36 VSIVMPVYNASCWLDECLQAILHQDFTGTMELSVFDDASTDDSRKVVEGWRERLEG---RGVSLVIS------------GHVSAHPRGVGYAKNKATSQSCGQYLCFQDADDVMLPQRV 139          
BLAST of mRNA_M-pyrifera_M_contig109964.2082.1 vs. uniprot
Match: UPI001E8E891A (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X1 n=5 Tax=Micropterus TaxID=27705 RepID=UPI001E8E891A)

HSP 1 Score: 81.3 bits (199), Expect = 9.760e-16
Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    4 VSIIIPVHNAASTLPDTITSILSQDYR-PLELSVFDDGSTDGSWEVLCGFEEKIRAGAYEGVSMVLSRGGGRVLVGDGDGSVGGSP---GYSRNRAVAQSLGSVLVLQDADDCMLPGRI 348
            VSI++PV+NA+  L + + +IL QD+   +ELSVFDD STD S +V+ G+ E++ A    GVS+V+S            G V   P   GY++N+A +QS G  L  QDADD MLP R+
Sbjct:   37 VSIVMPVYNASCWLDECLQAILHQDFTGTMELSVFDDASTDDSRKVVEGWRERLEA---RGVSLVIS------------GHVSAHPRGVGYAKNKATSQSCGQYLCFQDADDVMLPQRV 140          
BLAST of mRNA_M-pyrifera_M_contig109964.2082.1 vs. uniprot
Match: A0A6P7JA77_9TELE (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X1 n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7JA77_9TELE)

HSP 1 Score: 80.9 bits (198), Expect = 1.390e-15
Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    4 VSIIIPVHNAASTLPDTITSILSQDYR-PLELSVFDDGSTDGSWEVLCGFEEKIRAGAYEGVSMVLSRGGGRVLVGDGDGSVGGSP---GYSRNRAVAQSLGSVLVLQDADDCMLPGRI 348
            VSII+PVHNA+  L + +  IL QD+   +ELSVFDD STD S EV+ G+ +++ A    G S+V+S            G     P   GY++N+AV+QS G  L  QDADD MLP R+
Sbjct:   43 VSIIMPVHNASCWLGECLQGILHQDFTGSMELSVFDDASTDDSREVVQGWRDRLEA---RGFSVVIS------------GHNSAQPRGVGYAKNKAVSQSCGQYLCFQDADDIMLPQRV 146          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109964.2082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B5RFL8_XIPMA1.450e-1746.55Glyco_trans_2-like domain-containing protein n=1 T... [more]
R1DZ04_EMIHU4.840e-1743.97Glycosyl transferase, family 2 n=2 Tax=Emiliania h... [more]
A0A2I4CTI9_9TELE7.130e-1748.28UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
UPI001C3C8B359.810e-1743.97UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
A0A3Q2QLK5_FUNHE2.580e-1644.44UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
UPI00165B7A8F3.720e-1644.83UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
A0A315UTF8_GAMAF6.180e-1645.69Glyco_trans_2-like domain-containing protein n=1 T... [more]
UPI0018EB7B408.430e-1642.86UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
UPI001E8E891A9.760e-1643.70UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
A0A6P7JA77_9TELE1.390e-1544.54UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109964contigM-pyrifera_M_contig109964:1..348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue2.8e-12
Seed eggNOG ortholog70448.A0A090N4Q2
Preferred nameB3GNTL1
KEGG koko:K14529
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dolichyl-phosphate beta-glucosyltransferase activity
EggNOG OGsCOG0463@1,KOG2977@2759
EC3.1.26.5
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.148694-CDS-M-pyrifera_M_contig109964:0..3481622815610.148694-CDS-M-pyrifera_M_contig109964:0..348Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109964 1..348 -
1692277486.2381291-CDS-M-pyrifera_M_contig109964:0..3481692277486.2381291-CDS-M-pyrifera_M_contig109964:0..348Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109964 1..348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109964.2082.1prot_M-pyrifera_M_contig109964.2082.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109964 1..348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109964.2082.1

>prot_M-pyrifera_M_contig109964.2082.1 ID=prot_M-pyrifera_M_contig109964.2082.1|Name=mRNA_M-pyrifera_M_contig109964.2082.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
LVSIIIPVHNAASTLPDTITSILSQDYRPLELSVFDDGSTDGSWEVLCGF
EEKIRAGAYEGVSMVLSRGGGRVLVGDGDGSVGGSPGYSRNRAVAQSLGS
VLVLQDADDCMLPGRI
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mRNA from alignment at M-pyrifera_M_contig109964:1..348-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109964.2082.1 ID=mRNA_M-pyrifera_M_contig109964.2082.1|Name=mRNA_M-pyrifera_M_contig109964.2082.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig109964:1..348- (Macrocystis pyrifera P11B4 male)
CTGGTGTCAATCATCATTCCCGTGCATAACGCAGCGTCTACTTTACCAGA CACAATAACCTCCATTCTATCCCAAGACTATCGACCGTTGGAGTTGAGTG TGTTTGATGATGGGTCCACAGATGGATCTTGGGAGGTATTGTGTGGGTTT GAAGAGAAAATTCGTGCTGGAGCGTATGAGGGTGTGAGTATGGTATTGTC TCGAGGTGGAGGGCGCGTGTTGGTTGGAGATGGGGATGGTAGTGTTGGTG GCAGTCCAGGATATTCAAGAAATCGAGCAGTTGCGCAAAGTCTTGGAAGT GTTTTGGTGCTGCAAGATGCAGATGATTGTATGCTTCCTGGTCGTATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109964:1..348-

>mRNA_M-pyrifera_M_contig109964.2082.1 ID=mRNA_M-pyrifera_M_contig109964.2082.1|Name=mRNA_M-pyrifera_M_contig109964.2082.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig109964:1..348- (Macrocystis pyrifera P11B4 male)
CTGGTGTCAATCATCATTCCCGTGCATAACGCAGCGTCTACTTTACCAGA
CACAATAACCTCCATTCTATCCCAAGACTATCGACCGTTGGAGTTGAGTG
TGTTTGATGATGGGTCCACAGATGGATCTTGGGAGGTATTGTGTGGGTTT
GAAGAGAAAATTCGTGCTGGAGCGTATGAGGGTGTGAGTATGGTATTGTC
TCGAGGTGGAGGGCGCGTGTTGGTTGGAGATGGGGATGGTAGTGTTGGTG
GCAGTCCAGGATATTCAAGAAATCGAGCAGTTGCGCAAAGTCTTGGAAGT
GTTTTGGTGCTGCAAGATGCAGATGATTGTATGCTTCCTGGTCGTATTCT
GGTGTCAATCATCATTCCCGTGCATAACGCAGCGTCTACTTTACCAGACA
CAATAACCTCCATTCTATCCCAAGACTATCGACCGTTGGAGTTGAGTGTG
TTTGATGATGGGTCCACAGATGGATCTTGGGAGGTATTGTGTGGGTTTGA
AGAGAAAATTCGTGCTGGAGCGTATGAGGGTGTGAGTATGGTATTGTCTC
GAGGTGGAGGGCGCGTGTTGGTTGGAGATGGGGATGGTAGTGTTGGTGGC
AGTCCAGGATATTCAAGAAATCGAGCAGTTGCGCAAAGTCTTGGAAGTGT
TTTGGTGCTGCAAGATGCAGATGATTGTATGCTTCCTGGTCGTATT
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