prot_M-pyrifera_M_contig89784.20813.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig89784.20813.1
Unique Nameprot_M-pyrifera_M_contig89784.20813.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length68
Homology
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BLAST of mRNA_M-pyrifera_M_contig89784.20813.1 vs. uniprot
Match: A0A396JAS7_MEDTR (Putative RNA-directed DNA polymerase n=3 Tax=Medicago truncatula TaxID=3880 RepID=A0A396JAS7_MEDTR)

HSP 1 Score: 49.7 bits (117), Expect = 3.060e-5
Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 0 
Query:   10 WVSDNGSTNHVTSDARNVYDWVEIPPGKERVLIGDGKGMRVTGVGSLNLK--MHSKTDFNV 68
            W  D+G+T+HVT DA N+ D   +  G ++V IG+G+G+ +T VGSL     +H +T   +
Sbjct:  336 WYPDSGATHHVTPDASNLMDSTSLS-GSDQVHIGNGQGLAITSVGSLQFTSPLHPQTTLKL 395
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89784.20813.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A396JAS7_MEDTR3.060e-539.34Putative RNA-directed DNA polymerase n=3 Tax=Medic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89784contigM-pyrifera_M_contig89784:300..503 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89784.20813.1mRNA_M-pyrifera_M_contig89784.20813.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig89784 300..503 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig89784.20813.1 ID=prot_M-pyrifera_M_contig89784.20813.1|Name=mRNA_M-pyrifera_M_contig89784.20813.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
IRRPPGSEHWVSDNGSTNHVTSDARNVYDWVEIPPGKERVLIGDGKGMRV
TGVGSLNLKMHSKTDFNV
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