mRNA_M-pyrifera_M_contig89784.20813.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89784.20813.1
Unique NamemRNA_M-pyrifera_M_contig89784.20813.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89784.20813.1 vs. uniprot
Match: A0A396JAS7_MEDTR (Putative RNA-directed DNA polymerase n=3 Tax=Medicago truncatula TaxID=3880 RepID=A0A396JAS7_MEDTR)

HSP 1 Score: 49.7 bits (117), Expect = 3.060e-5
Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   28 WVSDNGSTNHVTSDARNVYDWVEIPPGKERVLIGDGKGMRVTGVGSLNLK--MHSKTDFNV 204
            W  D+G+T+HVT DA N+ D   +  G ++V IG+G+G+ +T VGSL     +H +T   +
Sbjct:  336 WYPDSGATHHVTPDASNLMDSTSLS-GSDQVHIGNGQGLAITSVGSLQFTSPLHPQTTLKL 395
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89784.20813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A396JAS7_MEDTR3.060e-539.34Putative RNA-directed DNA polymerase n=3 Tax=Medic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89784contigM-pyrifera_M_contig89784:300..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816808.7770476-CDS-M-pyrifera_M_contig89784:299..5031622816808.7770476-CDS-M-pyrifera_M_contig89784:299..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89784 300..503 +
1692278191.0187514-CDS-M-pyrifera_M_contig89784:299..5031692278191.0187514-CDS-M-pyrifera_M_contig89784:299..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89784 300..503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89784.20813.1prot_M-pyrifera_M_contig89784.20813.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89784 300..503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89784.20813.1

>prot_M-pyrifera_M_contig89784.20813.1 ID=prot_M-pyrifera_M_contig89784.20813.1|Name=mRNA_M-pyrifera_M_contig89784.20813.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
IRRPPGSEHWVSDNGSTNHVTSDARNVYDWVEIPPGKERVLIGDGKGMRV
TGVGSLNLKMHSKTDFNV
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mRNA from alignment at M-pyrifera_M_contig89784:300..503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89784.20813.1 ID=mRNA_M-pyrifera_M_contig89784.20813.1|Name=mRNA_M-pyrifera_M_contig89784.20813.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig89784:300..503+ (Macrocystis pyrifera P11B4 male)
ATCAGGCGACCACCAGGTAGTGAGCATTGGGTTTCCGATAACGGATCCAC
AAACCACGTTACCAGTGATGCTCGTAACGTCTATGACTGGGTAGAGATCC
CCCCTGGTAAGGAAAGAGTTTTGATTGGTGACGGTAAGGGGATGAGGGTG
ACAGGAGTAGGCAGTCTCAACTTGAAAATGCATTCGAAAACTGACTTCAA
TGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89784:300..503+

>mRNA_M-pyrifera_M_contig89784.20813.1 ID=mRNA_M-pyrifera_M_contig89784.20813.1|Name=mRNA_M-pyrifera_M_contig89784.20813.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig89784:300..503+ (Macrocystis pyrifera P11B4 male)
ATCAGGCGACCACCAGGTAGTGAGCATTGGGTTTCCGATAACGGATCCAC
AAACCACGTTACCAGTGATGCTCGTAACGTCTATGACTGGGTAGAGATCC
CCCCTGGTAAGGAAAGAGTTTTGATTGGTGACGGTAAGGGGATGAGGGTG
ACAGGAGTAGGCAGTCTCAACTTGAAAATGCATTCGAAAACTGACTTCAA
TGTAATCAGGCGACCACCAGGTAGTGAGCATTGGGTTTCCGATAACGGAT
CCACAAACCACGTTACCAGTGATGCTCGTAACGTCTATGACTGGGTAGAG
ATCCCCCCTGGTAAGGAAAGAGTTTTGATTGGTGACGGTAAGGGGATGAG
GGTGACAGGAGTAGGCAGTCTCAACTTGAAAATGCATTCGAAAACTGACT
TCAATGTA
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