mRNA_M-pyrifera_M_contig89780.20812.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89780.20812.1
Unique NamemRNA_M-pyrifera_M_contig89780.20812.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89780.20812.1 vs. uniprot
Match: A0A0N7F2B4_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium 5G12 TaxID=1701325 RepID=A0A0N7F2B4_9BACT)

HSP 1 Score: 106 bits (264), Expect = 4.180e-28
Identity = 56/82 (68.29%), Postives = 61/82 (74.39%), Query Frame = 1
Query:   13 SSQLTAVYNPKAFIPHAASLGQAFAHCRRFSTAAIRRCLGSVSVPVSRVMLSHPVAIVALVGRYPANKLIARGPILRRNHTI 258
            SS L  VYNPKAF PHAASL QAFAHC RF TAA RR LG VSVPV  ++LS  + IVALVGRYP NKLI RGP+L R   +
Sbjct:    3 SSFLKGVYNPKAFFPHAASLRQAFAHCARFPTAASRRSLGRVSVPVWLIVLSDQLRIVALVGRYPTNKLIRRGPVLGRRPKL 84          
BLAST of mRNA_M-pyrifera_M_contig89780.20812.1 vs. uniprot
Match: A0A2S2PI09_SCHGA (Uncharacterized protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PI09_SCHGA)

HSP 1 Score: 95.1 bits (235), Expect = 1.690e-23
Identity = 52/80 (65.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    7 RISSQLTAVYNPKAFIPHAASLGQAFAHCRRFSTAAIRRCLGSVSVPVSRVMLSHPVAIVALVGRYPANKLIARGPILRR 246
            + SS    VYNPKA IPHAASL QA AHC  F TAA RR LG +SVPV  V LS  + +VALVG YP NKLI RGPIL R
Sbjct:    9 KASSLAKGVYNPKAVIPHAASLHQASAHCAIFPTAASRRSLGRISVPVWPVTLSGRLPVVALVGHYPTNKLIGRGPILNR 88          
BLAST of mRNA_M-pyrifera_M_contig89780.20812.1 vs. uniprot
Match: A0A2R5L649_9ACAR (Uncharacterized protein (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5L649_9ACAR)

HSP 1 Score: 92.8 bits (229), Expect = 2.790e-22
Identity = 52/80 (65.00%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   13 SSQLTAVYNPKAFIPHAASLGQAFAHCRRFSTAAIRRCLGSVSVPVSRVMLSHPVAIVALVGRYPANKLIARGPILRRNH 252
            SS L AVYNPKA IPHAASL Q F HC  F TAA RR LG VSVPV  V LS  + +VALVG YP NKLI R PI  R +
Sbjct:   26 SSLLKAVYNPKAVIPHAASLHQGFPHCAIFPTAASRRSLGRVSVPVWPVALSGRLPVVALVGHYPTNKLIGREPIPNRKN 105          
BLAST of mRNA_M-pyrifera_M_contig89780.20812.1 vs. uniprot
Match: A0A087E900_9BIFI (PG1 protein n=1 Tax=Bifidobacterium thermacidophilum subsp. thermacidophilum TaxID=79262 RepID=A0A087E900_9BIFI)

HSP 1 Score: 91.7 bits (226), Expect = 9.060e-22
Identity = 52/82 (63.41%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    1 PYRISSQLTAVYNPKAFIPHAASLGQAFAHCRRFSTAAIRRCLGSVSVPVSRVMLSHPVAIVALVGRYPANKLIARGPILRR 246
            P R  SQ  AVYNPKA IPHAASL QA AHC  F TAA RR LG +SVP+  V LS  + + ALVG +PANKLI R PI RR
Sbjct:    9 PRRACSQTKAVYNPKASIPHAASLHQACAHCAIFPTAASRRSLGRISVPMWPVALSGRLPVEALVGPHPANKLIGRDPIPRR 90          
BLAST of mRNA_M-pyrifera_M_contig89780.20812.1 vs. uniprot
Match: A0A2M4CU86_ANODA (Hipothetical protein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CU86_ANODA)

HSP 1 Score: 91.3 bits (225), Expect = 1.160e-21
Identity = 51/76 (67.11%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   13 SSQLTAVYNPKAFIPHAASLGQAFAHCRRFSTAAIRRCLGSVSVPVSRVMLSHPVAIVALVGRYPANKLIARGPIL 240
            SS+   VYNPKA IPHAASL QAFAHC  F TAA RR LG VSVPV    LS  + +VALVG YP NKLI RG IL
Sbjct:   46 SSRSKGVYNPKAVIPHAASLHQAFAHCAIFPTAASRRSLGRVSVPVWPFALSGRLPVVALVGHYPTNKLIGRGLIL 121          
BLAST of mRNA_M-pyrifera_M_contig89780.20812.1 vs. uniprot
Match: A0A6B2EK14_9DIPT (Uncharacterized protein (Fragment) n=1 Tax=Phlebotomus kandelakii TaxID=1109342 RepID=A0A6B2EK14_9DIPT)

HSP 1 Score: 89.4 bits (220), Expect = 2.190e-21
Identity = 49/75 (65.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   13 SSQLTAVYNPKAFIPHAASLGQAFAHCRRFSTAAIRRCLGSVSVPVSRVMLSHPVAIVALVGRYPANKLIARGPI 237
            SS L  +YNPKAFI HAA L QA AHC RF TAA RR LG VSVPV  ++LS+ + IV LVG YP N LI RGPI
Sbjct:   23 SSPLKELYNPKAFIAHAAWLDQACAHCLRFPTAASRRSLGRVSVPVWLIILSNQLWIVGLVGHYPTNYLIQRGPI 97          
BLAST of mRNA_M-pyrifera_M_contig89780.20812.1 vs. uniprot
Match: A0A1N0XQZ7_9MYCO (Uncharacterized protein n=1 Tax=Mycobacteroides abscessus subsp. abscessus TaxID=1185650 RepID=A0A1N0XQZ7_9MYCO)

HSP 1 Score: 89.7 bits (221), Expect = 5.030e-21
Identity = 51/78 (65.38%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   13 SSQLTAVYNPKAFIPHAASLGQAFAHCRRFSTAAIRRCLGSVSVPVSRVMLSHPVAIVALVGRYPANKLIARGPILRR 246
            SS L  VYNPKA IPHAASL QA AHC  F TAA RR LG +SVPV  V LS  + +VALVG YP NKLI RG I  R
Sbjct:   14 SSLLKEVYNPKAVIPHAASLHQACAHCAIFPTAASRRSLGRISVPVWPVTLSGRLPVVALVGHYPTNKLIGRGLIPHR 91          
BLAST of mRNA_M-pyrifera_M_contig89780.20812.1 vs. uniprot
Match: S4WB24_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium FPPP_33K14 TaxID=1343846 RepID=S4WB24_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 1.130e-20
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 PYRISSQLTAVYNPKAFIPHAASLGQAFAHCRRFSTAAIRRCLGSVSVPVSRVMLSHPVAIVALVGRYPANKLIARGPILR 243
            P   SS  T +Y P++FI HAA L QAFAHC +F TAA RR LG +S+PV  ++LS  + I+ALVG YP NKLI R PIL+
Sbjct:   35 PPNFSSLTTDLYAPRSFIDHAALLRQAFAHCAKFPTAAPRRGLGRISIPVWLIILSDQLPIIALVGHYPTNKLIGRRPILK 115          
BLAST of mRNA_M-pyrifera_M_contig89780.20812.1 vs. uniprot
Match: A0A1X3A2F6_BIFAD (PG1 protein (Fragment) n=2 Tax=Bifidobacterium adolescentis TaxID=1680 RepID=A0A1X3A2F6_BIFAD)

HSP 1 Score: 89.4 bits (220), Expect = 1.240e-20
Identity = 50/79 (63.29%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 PYRISSQLTAVYNPKAFIPHAASLGQAFAHCRRFSTAAIRRCLGSVSVPVSRVMLSHPVAIVALVGRYPANKLIARGPI 237
            P R  SQ  AVYNPKA IPHAASL QA AHC  F TAA RR LG +SVP+  V LS  + + A+VGRYPA KLI R PI
Sbjct:    4 PRRACSQSKAVYNPKAVIPHAASLHQACAHCAIFPTAASRRSLGRISVPMWPVALSGRLPVEAMVGRYPAIKLIGRDPI 82          
BLAST of mRNA_M-pyrifera_M_contig89780.20812.1 vs. uniprot
Match: E4XWU9_OIKDI (Uncharacterized protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4XWU9_OIKDI)

HSP 1 Score: 86.7 bits (213), Expect = 4.710e-20
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   10 ISSQLTAVYNPKAFIPHAASLGQAFAHCRRFSTAAIRRCLGSVSVPVSRVMLSHPVAIVALVGRYPAN 213
            + S++T VY PK FIPHAASL QA AHC +FSTAA RRCL  VSVPV  V+LS  + ++ALVG YPAN
Sbjct:   56 LCSRMTGVYEPKPFIPHAASLHQACAHCEKFSTAATRRCLDRVSVPVWLVVLSDQLPVLALVGFYPAN 123          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89780.20812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0N7F2B4_9BACT4.180e-2868.29Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
A0A2S2PI09_SCHGA1.690e-2365.00Uncharacterized protein (Fragment) n=1 Tax=Schizap... [more]
A0A2R5L649_9ACAR2.790e-2265.00Uncharacterized protein (Fragment) n=1 Tax=Ornitho... [more]
A0A087E900_9BIFI9.060e-2263.41PG1 protein n=1 Tax=Bifidobacterium thermacidophil... [more]
A0A2M4CU86_ANODA1.160e-2167.11Hipothetical protein (Fragment) n=1 Tax=Anopheles ... [more]
A0A6B2EK14_9DIPT2.190e-2165.33Uncharacterized protein (Fragment) n=1 Tax=Phlebot... [more]
A0A1N0XQZ7_9MYCO5.030e-2165.38Uncharacterized protein n=1 Tax=Mycobacteroides ab... [more]
S4WB24_9BACT1.130e-2056.79Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
A0A1X3A2F6_BIFAD1.240e-2063.29PG1 protein (Fragment) n=2 Tax=Bifidobacterium ado... [more]
E4XWU9_OIKDI4.710e-2064.71Uncharacterized protein n=1 Tax=Oikopleura dioica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89780contigM-pyrifera_M_contig89780:413..673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.0
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog1382230.ASAP_2763
Hectar predicted targeting categorymitochondrion
EggNOG OGs1NAPW@1224,2DPM9@1,2UWJH@28211,332MQ@2
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816808.7441432-CDS-M-pyrifera_M_contig89780:412..6731622816808.7441432-CDS-M-pyrifera_M_contig89780:412..673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89780 413..673 +
1692278191.0041404-CDS-M-pyrifera_M_contig89780:412..6731692278191.0041404-CDS-M-pyrifera_M_contig89780:412..673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89780 413..673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89780.20812.1prot_M-pyrifera_M_contig89780.20812.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89780 413..673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89780.20812.1

>prot_M-pyrifera_M_contig89780.20812.1 ID=prot_M-pyrifera_M_contig89780.20812.1|Name=mRNA_M-pyrifera_M_contig89780.20812.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
PYRISSQLTAVYNPKAFIPHAASLGQAFAHCRRFSTAAIRRCLGSVSVPV
SRVMLSHPVAIVALVGRYPANKLIARGPILRRNHTI*
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mRNA from alignment at M-pyrifera_M_contig89780:413..673+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89780.20812.1 ID=mRNA_M-pyrifera_M_contig89780.20812.1|Name=mRNA_M-pyrifera_M_contig89780.20812.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig89780:413..673+ (Macrocystis pyrifera P11B4 male)
CCCTATAGAATTTCCTCCCAACTGACAGCGGTTTACAACCCGAAGGCCTT CATCCCGCACGCGGCGTCGCTCGGTCAGGCTTTCGCCCATTGCCGAAGAT TCTCGACTGCAGCCATCCGTAGATGTCTGGGCAGTGTCTCAGTCCCAGTG AGCCGGGTCATGCTCTCACACCCGGTAGCCATCGTAGCCTTGGTGGGCCG TTACCCCGCCAACAAGCTAATAGCACGTGGTCCGATCCTAAGGCGGAATC ACACCATTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89780:413..673+

>mRNA_M-pyrifera_M_contig89780.20812.1 ID=mRNA_M-pyrifera_M_contig89780.20812.1|Name=mRNA_M-pyrifera_M_contig89780.20812.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig89780:413..673+ (Macrocystis pyrifera P11B4 male)
CCCTATAGAATTTCCTCCCAACTGACAGCGGTTTACAACCCGAAGGCCTT
CATCCCGCACGCGGCGTCGCTCGGTCAGGCTTTCGCCCATTGCCGAAGAT
TCTCGACTGCAGCCATCCGTAGATGTCTGGGCAGTGTCTCAGTCCCAGTG
AGCCGGGTCATGCTCTCACACCCGGTAGCCATCGTAGCCTTGGTGGGCCG
TTACCCCGCCAACAAGCTAATAGCACGTGGTCCGATCCTAAGGCGGAATC
ACACCATTTGACCCTATAGAATTTCCTCCCAACTGACAGCGGTTTACAAC
CCGAAGGCCTTCATCCCGCACGCGGCGTCGCTCGGTCAGGCTTTCGCCCA
TTGCCGAAGATTCTCGACTGCAGCCATCCGTAGATGTCTGGGCAGTGTCT
CAGTCCCAGTGAGCCGGGTCATGCTCTCACACCCGGTAGCCATCGTAGCC
TTGGTGGGCCGTTACCCCGCCAACAAGCTAATAGCACGTGGTCCGATCCT
AAGGCGGAATCACACCATTTGA
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