mRNA_M-pyrifera_M_contig89732.20800.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89732.20800.1
Unique NamemRNA_M-pyrifera_M_contig89732.20800.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig89732.20800.1 vs. uniprot
Match: D7FUQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ9_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.150e-14
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 QIPVLPRPAAEADVMVSRLPNILGVKTEAFDPDTYDEEA 117
            +IPVLPRP AEADVM+SRLPNILGVKTEAFDPDTY+EEA
Sbjct:   58 EIPVLPRPPAEADVMISRLPNILGVKTEAFDPDTYEEEA 96
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89732.20800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUQ9_ECTSI1.150e-1489.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89732contigM-pyrifera_M_contig89732:199..315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816808.2856863-CDS-M-pyrifera_M_contig89732:198..3151622816808.2856863-CDS-M-pyrifera_M_contig89732:198..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89732 199..315 -
1692278190.7638521-CDS-M-pyrifera_M_contig89732:198..3151692278190.7638521-CDS-M-pyrifera_M_contig89732:198..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89732 199..315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89732.20800.1prot_M-pyrifera_M_contig89732.20800.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89732 199..315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89732.20800.1

>prot_M-pyrifera_M_contig89732.20800.1 ID=prot_M-pyrifera_M_contig89732.20800.1|Name=mRNA_M-pyrifera_M_contig89732.20800.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=39bp
QIPVLPRPAAEADVMVSRLPNILGVKTEAFDPDTYDEEA
back to top

mRNA from alignment at M-pyrifera_M_contig89732:199..315-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89732.20800.1 ID=mRNA_M-pyrifera_M_contig89732.20800.1|Name=mRNA_M-pyrifera_M_contig89732.20800.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=117bp|location=Sequence derived from alignment at M-pyrifera_M_contig89732:199..315- (Macrocystis pyrifera P11B4 male)
CAGATACCGGTTTTGCCACGGCCGGCCGCGGAAGCAGATGTGATGGTGTC
GCGGTTGCCGAACATCTTGGGAGTCAAGACGGAGGCGTTCGACCCTGACA
CCTACGACGAGGAGGCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig89732:199..315-

>mRNA_M-pyrifera_M_contig89732.20800.1 ID=mRNA_M-pyrifera_M_contig89732.20800.1|Name=mRNA_M-pyrifera_M_contig89732.20800.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig89732:199..315- (Macrocystis pyrifera P11B4 male)
CAGATACCGGTTTTGCCACGGCCGGCCGCGGAAGCAGATGTGATGGTGTC
GCGGTTGCCGAACATCTTGGGAGTCAAGACGGAGGCGTTCGACCCTGACA
CCTACGACGAGGAGGCGCAGATACCGGTTTTGCCACGGCCGGCCGCGGAA
GCAGATGTGATGGTGTCGCGGTTGCCGAACATCTTGGGAGTCAAGACGGA
GGCGTTCGACCCTGACACCTACGACGAGGAGGCG
back to top