mRNA_M-pyrifera_M_contig89685.20790.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89685.20790.1
Unique NamemRNA_M-pyrifera_M_contig89685.20790.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89685.20790.1 vs. uniprot
Match: A0A523LLE6_9GAMM (Cytochrome c n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523LLE6_9GAMM)

HSP 1 Score: 66.6 bits (161), Expect = 7.780e-12
Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 MKLLRRVSLGATAILLLILGFVYSGVFNVSALVPHSSLATWLLSTTMHTSVKRRADNIELPDLRD 195
            MK+++ + +     +++ +GF YSG+F+V A  PH  LA W+LSTTMH SVKRRA +I++PDL D
Sbjct:    1 MKVIKTLVIAVVVGVIVAVGFAYSGLFDVGASSPHGGLAKWVLSTTMHASVKRRAKDIDVPDLDD 65          
BLAST of mRNA_M-pyrifera_M_contig89685.20790.1 vs. uniprot
Match: A0A5J4ECC5_9BACT (Cytochrome c domain-containing protein n=1 Tax=bacterium MnTg04 TaxID=2080454 RepID=A0A5J4ECC5_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 1.330e-9
Identity = 29/51 (56.86%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   43 LLLILGFVYSGVFNVSALVPHSSLATWLLSTTMHTSVKRRADNIELPDLRD 195
            LL ++GF +SG+++VSA  PHSSL +WLLSTT H S++RRA  IE+P  +D
Sbjct:   15 LLAVVGFAHSGLYDVSANSPHSSLVSWLLSTTSHASIERRAKAIEVPRHKD 65          
BLAST of mRNA_M-pyrifera_M_contig89685.20790.1 vs. uniprot
Match: A0A7Y3FZA4_9GAMM (Cytochrome c n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y3FZA4_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 1.100e-8
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   61 FVYSGVFNVSALVPHSSLATWLLSTTMHTSVKRRADNIELPDLRD 195
            + YSG+ +VSA  PHS +  WLLSTT H S++RRA  I++PDL D
Sbjct:   21 YAYSGIHDVSASAPHSGIVNWLLSTTSHASIERRAKKIDVPDLSD 65          
BLAST of mRNA_M-pyrifera_M_contig89685.20790.1 vs. uniprot
Match: A0A523M8F5_9GAMM (Cytochrome c n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523M8F5_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 1.190e-7
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   46 LLILGFVYSGVFNVSALVPHSSLATWLLSTTMHTSVKRRADNIELPDL 189
            L ++GF YSG+++VSA  PHS+   WLLSTT H SV RRA ++ +P+L
Sbjct:   16 LAVVGFAYSGLYDVSARSPHSAPIDWLLSTTSHASVARRAKDVAVPNL 63          
BLAST of mRNA_M-pyrifera_M_contig89685.20790.1 vs. uniprot
Match: A0A3B0RPS8_9ZZZZ (Cytochrome c domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A3B0RPS8_9ZZZZ)

HSP 1 Score: 55.1 bits (131), Expect = 1.210e-7
Identity = 26/59 (44.07%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   16 RVSLGATAILLL-ILGFVYSGVFNVSALVPHSSLATWLLSTTMHTSVKRRADNIELPDL 189
            +++ GA  +L + +LGF YSG+FN++A   H  +  WLL+TT + S++ RA +IE+PDL
Sbjct:    5 KIAFGAALVLGVGVLGFAYSGIFNIAATATHDPVTNWLLTTTRNRSIEVRAQDIEVPDL 63          
BLAST of mRNA_M-pyrifera_M_contig89685.20790.1 vs. uniprot
Match: A0A2H0D5R6_9BACT (Cytochrome C class I protein n=2 Tax=unclassified Ignavibacteria TaxID=1798416 RepID=A0A2H0D5R6_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.230e-7
Identity = 23/46 (50.00%), Postives = 36/46 (78.26%), Query Frame = 1
Query:   61 FVYSGVFNVSALVPHSSLATWLLSTTMHTSVKRRADN-IELPDLRD 195
            F+YSG++N+SA+VPH++L  W+++T    SVK  AD+ I++PDL D
Sbjct:   21 FIYSGIYNISAMVPHNNLTLWMMNTVRDNSVKHNADDKIKMPDLSD 66          
BLAST of mRNA_M-pyrifera_M_contig89685.20790.1 vs. uniprot
Match: A0A2E5MM62_9ALTE (Cytochrome c domain-containing protein n=1 Tax=Alteromonadaceae bacterium TaxID=1916082 RepID=A0A2E5MM62_9ALTE)

HSP 1 Score: 54.3 bits (129), Expect = 4.850e-7
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   61 FVYSGVFNVSALVPHSSLATWLLSTTMHTSVKRRADNIELPDLRD 195
            F++SG++NVSA   HSS+ TW L  TMH+SV  R +NI+ PDL +
Sbjct:   21 FIFSGIYNVSARDEHSSIETWALHQTMHSSVDARIENIKAPDLNN 65          
BLAST of mRNA_M-pyrifera_M_contig89685.20790.1 vs. uniprot
Match: A0A3D6B782_9BACT (Cytochrome C class I protein n=1 Tax=Ignavibacteriales bacterium TaxID=2049428 RepID=A0A3D6B782_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 6.640e-7
Identity = 27/61 (44.26%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   28 GATAIL-LLILG---FVYSGVFNVSALVPHSSLATWLLSTTMHTSVKRRAD-NIELPDLRD 195
            GA A++ LLI+G   F+YSG++N+SA++ H  L  W+++T    S+K  AD +I++PDL D
Sbjct:    6 GAVAVIALLIVGYLIFIYSGIYNISAMIHHDKLTNWMMNTVRENSIKHNADEDIKMPDLTD 66          
BLAST of mRNA_M-pyrifera_M_contig89685.20790.1 vs. uniprot
Match: K6Z7V9_9ALTE (Cytochrome c family protein n=2 Tax=Paraglaciecola TaxID=1621534 RepID=K6Z7V9_9ALTE)

HSP 1 Score: 53.1 bits (126), Expect = 6.720e-7
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   40 ILLLILGF------VYSGVFNVSALVPHSSLATWLLSTTMHTSVKRRADNIELPDLRD 195
            +LL++LG       +YSG+ NV+A  PHS L  WLL  T  TS+K+ A++IE+PDL D
Sbjct:    8 LLLVVLGIAAATTVIYSGIVNVAADEPHSDLVYWLLEETRETSIKKAAEDIEVPDLVD 65          
BLAST of mRNA_M-pyrifera_M_contig89685.20790.1 vs. uniprot
Match: A0A6N1DNQ8_9GAMM (Cytochrome c n=1 Tax=Ectothiorhodospiraceae bacterium 2226 TaxID=2740164 RepID=A0A6N1DNQ8_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 1.030e-6
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   13 RRVSLGATAILLLILG----FVYSGVFNVSALVPHSSLATWLLSTTMHTSVKRRADNIELPDL 189
            R+V L     +LL  G    F+YSG+++++A  PH+    W++ TTM  SVKRRA NIE P+L
Sbjct:    7 RQVLLALAVFVLLAAGGGVAFIYSGIYDIAATEPHTRPVRWVMQTTMEHSVKRRAANIEAPEL 69          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89685.20790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A523LLE6_9GAMM7.780e-1249.23Cytochrome c n=1 Tax=Gammaproteobacteria bacterium... [more]
A0A5J4ECC5_9BACT1.330e-956.86Cytochrome c domain-containing protein n=1 Tax=bac... [more]
A0A7Y3FZA4_9GAMM1.100e-855.56Cytochrome c n=1 Tax=Woeseiaceae bacterium TaxID=2... [more]
A0A523M8F5_9GAMM1.190e-754.17Cytochrome c n=1 Tax=Gammaproteobacteria bacterium... [more]
A0A3B0RPS8_9ZZZZ1.210e-744.07Cytochrome c domain-containing protein n=2 Tax=roo... [more]
A0A2H0D5R6_9BACT1.230e-750.00Cytochrome C class I protein n=2 Tax=unclassified ... [more]
A0A2E5MM62_9ALTE4.850e-753.33Cytochrome c domain-containing protein n=1 Tax=Alt... [more]
A0A3D6B782_9BACT6.640e-744.26Cytochrome C class I protein n=1 Tax=Ignavibacteri... [more]
K6Z7V9_9ALTE6.720e-748.28Cytochrome c family protein n=2 Tax=Paraglaciecola... [more]
A0A6N1DNQ8_9GAMM1.030e-644.44Cytochrome c n=1 Tax=Ectothiorhodospiraceae bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89685contigM-pyrifera_M_contig89685:2..199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816807.9148757-CDS-M-pyrifera_M_contig89685:1..1991622816807.9148757-CDS-M-pyrifera_M_contig89685:1..199Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89685 2..199 -
1692278190.571147-CDS-M-pyrifera_M_contig89685:1..1991692278190.571147-CDS-M-pyrifera_M_contig89685:1..199Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89685 2..199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89685.20790.1prot_M-pyrifera_M_contig89685.20790.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89685 2..199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89685.20790.1

>prot_M-pyrifera_M_contig89685.20790.1 ID=prot_M-pyrifera_M_contig89685.20790.1|Name=mRNA_M-pyrifera_M_contig89685.20790.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
MKLLRRVSLGATAILLLILGFVYSGVFNVSALVPHSSLATWLLSTTMHTS
VKRRADNIELPDLRDA
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mRNA from alignment at M-pyrifera_M_contig89685:2..199-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89685.20790.1 ID=mRNA_M-pyrifera_M_contig89685.20790.1|Name=mRNA_M-pyrifera_M_contig89685.20790.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig89685:2..199- (Macrocystis pyrifera P11B4 male)
ATGAAATTATTACGCCGAGTGTCGCTGGGCGCGACAGCCATACTCTTACT GATTCTCGGGTTTGTGTACTCGGGCGTTTTCAACGTCAGCGCCCTGGTAC CACATAGTTCGCTTGCCACGTGGCTGCTGTCCACGACGATGCACACGTCG GTCAAACGGCGCGCCGACAACATCGAGCTACCGGACCTGCGAGATGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89685:2..199-

>mRNA_M-pyrifera_M_contig89685.20790.1 ID=mRNA_M-pyrifera_M_contig89685.20790.1|Name=mRNA_M-pyrifera_M_contig89685.20790.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig89685:2..199- (Macrocystis pyrifera P11B4 male)
ATGAAATTATTACGCCGAGTGTCGCTGGGCGCGACAGCCATACTCTTACT
GATTCTCGGGTTTGTGTACTCGGGCGTTTTCAACGTCAGCGCCCTGGTAC
CACATAGTTCGCTTGCCACGTGGCTGCTGTCCACGACGATGCACACGTCG
GTCAAACGGCGCGCCGACAACATCGAGCTACCGGACCTGCGAGATGCCAT
GAAATTATTACGCCGAGTGTCGCTGGGCGCGACAGCCATACTCTTACTGA
TTCTCGGGTTTGTGTACTCGGGCGTTTTCAACGTCAGCGCCCTGGTACCA
CATAGTTCGCTTGCCACGTGGCTGCTGTCCACGACGATGCACACGTCGGT
CAAACGGCGCGCCGACAACATCGAGCTACCGGACCTGCGAGATGCC
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