mRNA_M-pyrifera_M_contig89619.20778.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89619.20778.1
Unique NamemRNA_M-pyrifera_M_contig89619.20778.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89619.20778.1 vs. uniprot
Match: A0A7X7KBU0_9BACT (Protein kinase (Fragment) n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7KBU0_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 1.020e-12
Identity = 47/105 (44.76%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:    1 LTKLQAAQAPRIVDICQLAPETPQPLATAIAACLRMRPEHRPESFARLSAMLGPATKRDTAALAGFMRGEGPGRVRLRTTASTARHSRWTSVWAAATAGCLVSLA 315
            L+KL++A+   I D+ + AP+ P PLA AIA+C    P  RPES ARLSAMLGP T+     L   +   G   VRL T A + R S    +W  A A C V LA
Sbjct:  283 LSKLRSAEECLIRDVREYAPDAPPPLAAAIASCAWKDPRRRPESMARLSAMLGPPTRDGRERLIAALNRRGRPAVRLTTAARSIRRSNNAPIWLTAAACCAVLLA 387
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89619.20778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X7KBU0_9BACT1.020e-1244.76Protein kinase (Fragment) n=1 Tax=Pirellulaceae ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89619contigM-pyrifera_M_contig89619:2..325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816807.2683086-CDS-M-pyrifera_M_contig89619:1..3251622816807.2683086-CDS-M-pyrifera_M_contig89619:1..325Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89619 2..325 +
1692278190.1379297-CDS-M-pyrifera_M_contig89619:1..3251692278190.1379297-CDS-M-pyrifera_M_contig89619:1..325Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89619 2..325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89619.20778.1prot_M-pyrifera_M_contig89619.20778.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89619 2..325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89619.20778.1

>prot_M-pyrifera_M_contig89619.20778.1 ID=prot_M-pyrifera_M_contig89619.20778.1|Name=mRNA_M-pyrifera_M_contig89619.20778.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
LTKLQAAQAPRIVDICQLAPETPQPLATAIAACLRMRPEHRPESFARLSA
MLGPATKRDTAALAGFMRGEGPGRVRLRTTASTARHSRWTSVWAAATAGC
LVSLAVTL
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mRNA from alignment at M-pyrifera_M_contig89619:2..325+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89619.20778.1 ID=mRNA_M-pyrifera_M_contig89619.20778.1|Name=mRNA_M-pyrifera_M_contig89619.20778.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig89619:2..325+ (Macrocystis pyrifera P11B4 male)
CTGACTAAACTACAAGCAGCACAAGCCCCGCGAATCGTCGACATCTGTCA
GCTCGCTCCGGAAACACCCCAGCCGCTGGCCACCGCAATCGCGGCCTGTC
TTCGCATGCGGCCAGAGCACCGGCCGGAATCATTCGCCCGACTTTCGGCA
ATGCTAGGCCCAGCGACAAAACGCGACACCGCGGCGTTGGCCGGATTCAT
GCGTGGCGAAGGTCCAGGACGTGTGCGACTGCGGACGACAGCCTCAACCG
CACGACATTCAAGATGGACTTCGGTGTGGGCAGCCGCAACAGCCGGATGC
CTGGTCTCGTTGGCTGTGACCTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89619:2..325+

>mRNA_M-pyrifera_M_contig89619.20778.1 ID=mRNA_M-pyrifera_M_contig89619.20778.1|Name=mRNA_M-pyrifera_M_contig89619.20778.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig89619:2..325+ (Macrocystis pyrifera P11B4 male)
CTGACTAAACTACAAGCAGCACAAGCCCCGCGAATCGTCGACATCTGTCA
GCTCGCTCCGGAAACACCCCAGCCGCTGGCCACCGCAATCGCGGCCTGTC
TTCGCATGCGGCCAGAGCACCGGCCGGAATCATTCGCCCGACTTTCGGCA
ATGCTAGGCCCAGCGACAAAACGCGACACCGCGGCGTTGGCCGGATTCAT
GCGTGGCGAAGGTCCAGGACGTGTGCGACTGCGGACGACAGCCTCAACCG
CACGACATTCAAGATGGACTTCGGTGTGGGCAGCCGCAACAGCCGGATGC
CTGGTCTCGTTGGCTGTGACCTTGCTGACTAAACTACAAGCAGCACAAGC
CCCGCGAATCGTCGACATCTGTCAGCTCGCTCCGGAAACACCCCAGCCGC
TGGCCACCGCAATCGCGGCCTGTCTTCGCATGCGGCCAGAGCACCGGCCG
GAATCATTCGCCCGACTTTCGGCAATGCTAGGCCCAGCGACAAAACGCGA
CACCGCGGCGTTGGCCGGATTCATGCGTGGCGAAGGTCCAGGACGTGTGC
GACTGCGGACGACAGCCTCAACCGCACGACATTCAAGATGGACTTCGGTG
TGGGCAGCCGCAACAGCCGGATGCCTGGTCTCGTTGGCTGTGACCTTG
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