mRNA_M-pyrifera_M_contig89611.20776.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89611.20776.1
Unique NamemRNA_M-pyrifera_M_contig89611.20776.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89611.20776.1 vs. uniprot
Match: A0A4R5FBP6_9FLAO (Alpha/beta fold hydrolase n=1 Tax=Flavobacterium rhamnosiphilum TaxID=2541724 RepID=A0A4R5FBP6_9FLAO)

HSP 1 Score: 103 bits (258), Expect = 7.470e-24
Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    1 ELMNPWFQHFFNYDPLPALEKIRSLTPEMPVLAINGSKDLQVLP-ENLDIMAKLFESSSS--FTKKEFENMNHLFQSCSTGLHTEYSELDESFSPVAMDFISDWILERTKRS 327
            ++ +PW Q+F  Y+P  ALEK++      PVLA+NG KDLQV P ENL  +    E   +   T KEF N+NHLFQ C TG   EY+E++++FSP A+D I+ WIL + K S
Sbjct:  359 QMTSPWNQYFIKYNPATALEKVKC-----PVLAVNGEKDLQVPPKENLTAIKNALEKGGNKKVTIKEFPNLNHLFQECKTGSPNEYAEIEQTFSPTALDEITKWILNQNKNS 465          
BLAST of mRNA_M-pyrifera_M_contig89611.20776.1 vs. uniprot
Match: A0A3M8FRZ2_9BACT (Alpha/beta hydrolase n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A3M8FRZ2_9BACT)

HSP 1 Score: 103 bits (258), Expect = 1.050e-23
Identity = 55/107 (51.40%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    4 LMNPWFQHFFNYDPLPALEKIRSLTPEMPVLAINGSKDLQVLP-ENLDIMAKLFESSS--SFTKKEFENMNHLFQSCSTGLHTEYSELDESFSPVAMDFISDWILER 315
            L  PWF HF  YDP P L K+     E PVLA+NGSKDLQVL  +NLD + ++FE  S  +F   EFE +NHLFQ  +TG  +EY E++ +F   AM  ISDWIL++
Sbjct:  440 LDRPWFYHFLTYDPRPMLRKL-----EQPVLAVNGSKDLQVLTSQNLDEIRRVFEEESKDNFKAIEFEGLNHLFQPATTGAMSEYGEIETTFDENAMQVISDWILKQ 541          
BLAST of mRNA_M-pyrifera_M_contig89611.20776.1 vs. uniprot
Match: A9DKT7_9FLAO (Hydrolase_4 domain-containing protein n=1 Tax=Kordia algicida OT-1 TaxID=391587 RepID=A9DKT7_9FLAO)

HSP 1 Score: 102 bits (255), Expect = 1.920e-23
Identity = 50/105 (47.62%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    4 LMNPWFQHFFNYDPLPALEKIRSLTPEMPVLAINGSKDLQVLPE-NLDIMAKLFESSSSFTKKEFENMNHLFQSCSTGLHTEYSELDESFSPVAMDFISDWILER 315
            + +PW + F  Y+P  +L+K+       PVLA+NG KD QVLPE NL+ + K  + ++  T K+F+N+NHLFQ+  TG  +EYSE++E+F+PVA++FIS WI ER
Sbjct:  363 ITSPWMRTFLGYNPQTSLQKVNC-----PVLAVNGEKDFQVLPELNLNAIKKGLKHNNDVTIKQFKNLNHLFQTSETGALSEYSEIEETFAPVALNFISAWINER 462          
BLAST of mRNA_M-pyrifera_M_contig89611.20776.1 vs. uniprot
Match: A0A2T6C6N7_9FLAO (Hydrolase_4 domain-containing protein n=2 Tax=Kordia TaxID=221065 RepID=A0A2T6C6N7_9FLAO)

HSP 1 Score: 102 bits (255), Expect = 1.930e-23
Identity = 50/103 (48.54%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   10 NPWFQHFFNYDPLPALEKIRSLTPEMPVLAINGSKDLQVLPE-NLDIMAKLFESSSSFTKKEFENMNHLFQSCSTGLHTEYSELDESFSPVAMDFISDWILER 315
            +PW + F +YDP  +L+K+       PVLA+NG KD QVLP+ NLD + K  + +   T KEF+N+NHLFQ+  TG  +EY+ ++E+F+PVA++FISDWI  R
Sbjct:  366 SPWMRAFMSYDPQVSLQKVNC-----PVLAVNGEKDFQVLPKMNLDGIQKGLQHNKDVTIKEFKNLNHLFQTSETGAFSEYATIEETFAPVALNFISDWINAR 463          
BLAST of mRNA_M-pyrifera_M_contig89611.20776.1 vs. uniprot
Match: A0A1M7JKS5_9FLAO (Peptidase_S15 domain-containing protein n=1 Tax=Flavobacterium xanthum TaxID=69322 RepID=A0A1M7JKS5_9FLAO)

HSP 1 Score: 102 bits (254), Expect = 2.700e-23
Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 ELMNPWFQHFFNYDPLPALEKIRSLTPEMPVLAINGSKDLQV-LPENLDIMAKLFESSSS--FTKKEFENMNHLFQSCSTGLHTEYSELDESFSPVAMDFISDWILERTK 321
            ++ NPW Q+F  Y+P P LEK++      PVLAING KDLQV   ENL+ + K      +     KEF N+NHLFQ C TG  +EYS ++++FSP+A+D I+ WI ++TK
Sbjct:  362 QIANPWMQYFIKYNPGPDLEKVKC-----PVLAINGEKDLQVPSKENLEAIKKALTKGGNKKVIVKEFPNLNHLFQECKTGSPSEYSTIEQTFSPIALDEIAKWIKQQTK 466          
BLAST of mRNA_M-pyrifera_M_contig89611.20776.1 vs. uniprot
Match: A0A838GVP6_9BACT (Alpha/beta hydrolase n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A838GVP6_9BACT)

HSP 1 Score: 101 bits (252), Expect = 3.850e-23
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    4 LMNPWFQHFFNYDPLPALEKIRSLTPEMPVLAINGSKDLQVLP-ENLDIMAKLFESSSS--FTKKEFENMNHLFQSCSTGLHTEYSELDESFSPVAMDFISDWILERT 318
            +++PWF++F  YDP P L K+     ++PVLAING +DLQV P ENL  +A+  ++  +  FT  E   +NHLFQ   TG   EY +++E+FSP A+  ISDWIL+RT
Sbjct:  320 MLSPWFRYFLTYDPRPTLRKV-----QIPVLAINGERDLQVPPKENLAAIAEALKAGGNKDFTTVELPRLNHLFQESKTGNVDEYGKIEETFSPAALQLISDWILKRT 422          
BLAST of mRNA_M-pyrifera_M_contig89611.20776.1 vs. uniprot
Match: A0A1M5U353_9FLAO (Hydrolase_4 domain-containing protein n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A1M5U353_9FLAO)

HSP 1 Score: 100 bits (250), Expect = 3.880e-23
Identity = 52/109 (47.71%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    4 LMNPWFQHFFNYDPLPALEKIRSLTPEMPVLAINGSKDLQVLP-ENLDIMAKLFESSSS--FTKKEFENMNHLFQSCSTGLHTEYSELDESFSPVAMDFISDWILERTK 321
            ++ PW  +F  Y+P   +E++R     +PVLA+NG+KDLQ+L  ENL    ++ ESS +   T KE +N+NHLFQ+C TGL  EY +L+ESFS +AM+ IS WI ++TK
Sbjct:  258 ILRPWMVNFLRYNPEKYIEQVR-----VPVLALNGTKDLQILSSENLSEWKRILESSGNKNVTTKELQNLNHLFQTCETGLPDEYEKLNESFSVIAMNEISKWIKKQTK 361          
BLAST of mRNA_M-pyrifera_M_contig89611.20776.1 vs. uniprot
Match: A0A1I0V876_9BACT (Peptidase_S15 domain-containing protein n=2 Tax=Algoriphagus aquimarinus TaxID=237018 RepID=A0A1I0V876_9BACT)

HSP 1 Score: 101 bits (252), Expect = 5.130e-23
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    1 ELMNPWFQHFFNYDPLPALEKIRSLTPEMPVLAINGSKDLQVLP-ENLDIMAKLFESSSS--FTKKEFENMNHLFQSCSTGLHTEYSELDESFSPVAMDFISDWILERTK 321
            +L +PW ++F  YDP+PALEK+ S     PVLAING KDLQV P ENL  +    E   +   T  E + +NHLFQ   TG  +EY  ++++FSPVAM+ + +WI ER K
Sbjct:  362 QLTSPWMEYFIKYDPVPALEKVTS-----PVLAINGEKDLQVPPKENLGAIKAALEKGGNKDITTVELQGLNHLFQEAQTGAPSEYGTIEQTFSPVAMEVVLNWIKERVK 466          
BLAST of mRNA_M-pyrifera_M_contig89611.20776.1 vs. uniprot
Match: A0A416WG46_9BACT (Alpha/beta fold hydrolase n=1 Tax=Odoribacter sp. AF15-53 TaxID=2292236 RepID=A0A416WG46_9BACT)

HSP 1 Score: 101 bits (251), Expect = 6.750e-23
Identity = 49/104 (47.12%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 ELMNPWFQHFFNYDPLPALEKIRSLTPEMPVLAINGSKDLQVLPENLDIMAKLFESSSS--FTKKEFENMNHLFQSCSTGLHTEYSELDESFSPVAMDFISDWI 306
            ++++PW   F  YDP+P LE ++      PVLA+NGS DLQVLPENL+I+ K  E+  +   T KE   +NHLFQ+C +G  T Y  + E+FSPVA+  I +WI
Sbjct:  353 QVLSPWMYFFVTYDPVPTLESVKC-----PVLALNGSNDLQVLPENLEIIKKALEAGGNRQVTVKELPGLNHLFQTCKSGSPTLYGTITETFSPVALKEIGEWI 451          
BLAST of mRNA_M-pyrifera_M_contig89611.20776.1 vs. uniprot
Match: A0A3E0E1M2_9BACT (BAAT_C domain-containing protein n=1 Tax=Algoriphagus antarcticus TaxID=238540 RepID=A0A3E0E1M2_9BACT)

HSP 1 Score: 100 bits (249), Expect = 1.350e-22
Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 ELMNPWFQHFFNYDPLPALEKIRSLTPEMPVLAINGSKDLQVLP-ENLD-IMAKLFES-SSSFTKKEFENMNHLFQSCSTGLHTEYSELDESFSPVAMDFISDWILERTK 321
            ++ +PW Q+F  YDP PALEK+       PVLAING KDLQV P ENL+ I A L +  +++ T  E   +NHLFQ   TG  +EYSE++++FSP AM+ + +WI ER K
Sbjct:  362 QMTSPWMQYFVKYDPAPALEKV-----SCPVLAINGEKDLQVPPKENLEAIKAALAKGGNTNVTTMELPGLNHLFQEAKTGAPSEYSEIEQTFSPKAMEVVLEWIKERVK 466          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89611.20776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4R5FBP6_9FLAO7.470e-2447.32Alpha/beta fold hydrolase n=1 Tax=Flavobacterium r... [more]
A0A3M8FRZ2_9BACT1.050e-2351.40Alpha/beta hydrolase n=1 Tax=Phycisphaera sp. TaxI... [more]
A9DKT7_9FLAO1.920e-2347.62Hydrolase_4 domain-containing protein n=1 Tax=Kord... [more]
A0A2T6C6N7_9FLAO1.930e-2348.54Hydrolase_4 domain-containing protein n=2 Tax=Kord... [more]
A0A1M7JKS5_9FLAO2.700e-2347.27Peptidase_S15 domain-containing protein n=1 Tax=Fl... [more]
A0A838GVP6_9BACT3.850e-2347.22Alpha/beta hydrolase n=1 Tax=Pyrinomonadaceae bact... [more]
A0A1M5U353_9FLAO3.880e-2347.71Hydrolase_4 domain-containing protein n=2 Tax=Flav... [more]
A0A1I0V876_9BACT5.130e-2347.27Peptidase_S15 domain-containing protein n=2 Tax=Al... [more]
A0A416WG46_9BACT6.750e-2347.12Alpha/beta fold hydrolase n=1 Tax=Odoribacter sp. ... [more]
A0A3E0E1M2_9BACT1.350e-2249.09BAAT_C domain-containing protein n=1 Tax=Algoripha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89611contigM-pyrifera_M_contig89611:2..331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score104.0
Seed ortholog evalue4.5e-20
Seed eggNOG ortholog391587.KAOT1_14317
KEGG koko:K06889
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Hydrolases of the alpha beta superfamily
EggNOG OGs1HWSK@117743,4NFRN@976,COG1073@1,COG1073@2
COG Functional cat.E
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size330
Cds size324
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816807.175931-UTR-M-pyrifera_M_contig89611:1..71622816807.175931-UTR-M-pyrifera_M_contig89611:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89611 2..7 +
1692278190.0764358-UTR-M-pyrifera_M_contig89611:1..71692278190.0764358-UTR-M-pyrifera_M_contig89611:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89611 2..7 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816807.1874342-CDS-M-pyrifera_M_contig89611:7..3311622816807.1874342-CDS-M-pyrifera_M_contig89611:7..331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89611 8..331 +
1692278190.0891514-CDS-M-pyrifera_M_contig89611:7..3311692278190.0891514-CDS-M-pyrifera_M_contig89611:7..331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89611 8..331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89611.20776.1prot_M-pyrifera_M_contig89611.20776.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89611 8..331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89611.20776.1

>prot_M-pyrifera_M_contig89611.20776.1 ID=prot_M-pyrifera_M_contig89611.20776.1|Name=mRNA_M-pyrifera_M_contig89611.20776.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
MNPWFQHFFNYDPLPALEKIRSLTPEMPVLAINGSKDLQVLPENLDIMAK
LFESSSSFTKKEFENMNHLFQSCSTGLHTEYSELDESFSPVAMDFISDWI
LERTKRS*
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mRNA from alignment at M-pyrifera_M_contig89611:2..331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89611.20776.1 ID=mRNA_M-pyrifera_M_contig89611.20776.1|Name=mRNA_M-pyrifera_M_contig89611.20776.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig89611:2..331+ (Macrocystis pyrifera P11B4 male)
GAGCTCATGAACCCATGGTTCCAACACTTCTTCAACTACGACCCTCTGCC CGCCCTCGAGAAGATTCGCAGTCTGACGCCAGAGATGCCTGTGCTGGCCA TCAACGGCAGCAAGGATCTCCAGGTCCTGCCAGAGAACCTGGACATCATG GCAAAGCTCTTCGAGTCCAGCAGCAGCTTCACCAAGAAGGAGTTCGAGAA TATGAACCATCTTTTCCAGTCCTGCTCGACCGGCCTCCACACCGAGTACT CCGAGTTGGACGAGTCTTTCTCCCCTGTTGCGATGGACTTCATCAGCGAC TGGATCCTTGAGCGCACCAAGCGTTCGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89611:2..331+

>mRNA_M-pyrifera_M_contig89611.20776.1 ID=mRNA_M-pyrifera_M_contig89611.20776.1|Name=mRNA_M-pyrifera_M_contig89611.20776.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig89611:2..331+ (Macrocystis pyrifera P11B4 male)
ATGAACCCATGGTTCCAACACTTCTTCAACTACGACCCTCTGCCCGCCCT
CGAGAAGATTCGCAGTCTGACGCCAGAGATGCCTGTGCTGGCCATCAACG
GCAGCAAGGATCTCCAGGTCCTGCCAGAGAACCTGGACATCATGGCAAAG
CTCTTCGAGTCCAGCAGCAGCTTCACCAAGAAGGAGTTCGAGAATATGAA
CCATCTTTTCCAGTCCTGCTCGACCGGCCTCCACACCGAGTACTCCGAGT
TGGACGAGTCTTTCTCCCCTGTTGCGATGGACTTCATCAGCGACTGGATC
CTTGAGCGCACCAAGCGTTCGTAAATGAACCCATGGTTCCAACACTTCTT
CAACTACGACCCTCTGCCCGCCCTCGAGAAGATTCGCAGTCTGACGCCAG
AGATGCCTGTGCTGGCCATCAACGGCAGCAAGGATCTCCAGGTCCTGCCA
GAGAACCTGGACATCATGGCAAAGCTCTTCGAGTCCAGCAGCAGCTTCAC
CAAGAAGGAGTTCGAGAATATGAACCATCTTTTCCAGTCCTGCTCGACCG
GCCTCCACACCGAGTACTCCGAGTTGGACGAGTCTTTCTCCCCTGTTGCG
ATGGACTTCATCAGCGACTGGATCCTTGAGCGCACCAAGCGTTCGTAA
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