mRNA_M-pyrifera_M_contig89572.20769.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89572.20769.1
Unique NamemRNA_M-pyrifera_M_contig89572.20769.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89572.20769.1 vs. uniprot
Match: A0A0L0GG49_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GG49_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 4.180e-8
Identity = 33/98 (33.67%), Postives = 53/98 (54.08%), Query Frame = 1
Query:   19 DGSNALLQKDWQAAVDAFTVVIEDKPTAEAHV-----NRGIAYSNLGKLRESYDDCNAAIRLNPKLAEAYFXRARLYVKAKRVERALSDFDKAIELKP 297
            +G+     K++ +A++ +T  IE  P  ++ V     NR   Y  L +  ++ DDC  A+ LN +  +A   RA+ Y K  ++E AL DF KA+EL P
Sbjct:  130 EGNIFFKMKEYDSAINLYTECIESCPAGDSRVAVYFCNRAACYLALEEYNDAVDDCTEALSLNKEYVKALVRRAQGYEKQDKLEDALEDFKKAVELDP 227          
BLAST of mRNA_M-pyrifera_M_contig89572.20769.1 vs. uniprot
Match: A0A834XZC8_9HYME (Uncharacterized protein n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=A0A834XZC8_9HYME)

HSP 1 Score: 56.2 bits (134), Expect = 3.630e-7
Identity = 31/97 (31.96%), Postives = 52/97 (53.61%), Query Frame = 1
Query:   19 DGSNALLQKDWQAAVDAFTVVIE------DKPTAEAHVNRGIAYSNLGKLRESYDDCNAAIRLNPKLAEAYFXRARLYVKAKRVERALSDFDKAIEL 291
            +G+N     ++  A++ +T  I+      D   A  + NR  A S   K   + DDC+ AI LNPK  +A   RA+LY +  +++ AL+D+ K +E+
Sbjct:  107 EGNNLFKLLNYDKAIETYTQGIQTCPLAFDNDRAILYANRAAAKSKCDKKTSAIDDCSKAIELNPKYLKAMLRRAQLYEQDDKLDEALADYQKVLEI 203          
BLAST of mRNA_M-pyrifera_M_contig89572.20769.1 vs. uniprot
Match: A0A2R5LBI3_9ACAR (Putative tetratricopeptide repeat protein 1 (Fragment) n=3 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LBI3_9ACAR)

HSP 1 Score: 52.8 bits (125), Expect = 4.180e-6
Identity = 31/96 (32.29%), Postives = 50/96 (52.08%), Query Frame = 1
Query:   16 EDGSNALLQKDWQAAVDAFTVVIE--DKPTAEAHVNRGIAYSNLGKLRESYDDCNAAIRLNPKLAEAYFXRARLYVKAKRVERALSDFDKAIELKP 297
            EDG+       +Q A DA+T  +       A  + NR  A S L +   + +DC  AI L+P   +A   RA LY + ++++ AL+D+ + +EL P
Sbjct:   44 EDGNGMFKNGRFQEASDAYTQALRLCTLDAAIIYSNRAAARSRLDQREAAIEDCTRAIELDPCYIKAILRRAHLYEETEKLDEALADYKRVLELDP 139          
BLAST of mRNA_M-pyrifera_M_contig89572.20769.1 vs. uniprot
Match: A0A7M4F8K4_CROPO (Neutrophil cytosolic factor 2 n=2 Tax=Crocodylus porosus TaxID=8502 RepID=A0A7M4F8K4_CROPO)

HSP 1 Score: 53.5 bits (127), Expect = 4.180e-6
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 1
Query:   13 FEDGSNALLQKDWQAAVDAFTVVIEDKPTAEAHVNRGIAYSNLGKLRESYDDCNAAIRLNPKLAEAYFXRARLYVKAKRVERALSDFDKAI 285
            + DG  A  QKDW+AA++AFT V    P+++   N G  +  LG L E+      +I  +  LA AYF R  ++ K +  + A+ DF +A+
Sbjct:   10 WHDGVRAADQKDWRAALEAFTSV--QNPSSKLCFNIGSIHLILGNLAEAEQAFARSINCDKHLAVAYFQRGTVFYKTENYDSAVKDFKEAL 98          
BLAST of mRNA_M-pyrifera_M_contig89572.20769.1 vs. uniprot
Match: A0A352FH93_9BACT (Uncharacterized protein n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A352FH93_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 5.940e-6
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    4 ATPFEDGSNALLQKDWQAAVDAFTVVIEDKPT-AEAHVNRGIAYSNLGKLR-ESYDDCNAAIRLNPKLAEAYFXRA 225
            A PFE G       +++AA++ FT  I+ +P  A A+  RG+A  +    R ++ +D NAAI+LNP+ AEAY  RA
Sbjct:   49 ADPFEQGLREFENGNYKAAIELFTRAIKSRPNDARAYYQRGLALDSSYYSRGQALNDYNAAIKLNPRYAEAYCARA 124          
BLAST of mRNA_M-pyrifera_M_contig89572.20769.1 vs. uniprot
Match: A0A6L2PFG6_COPFO (Uncharacterized protein (Fragment) n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PFG6_COPFO)

HSP 1 Score: 52.8 bits (125), Expect = 6.950e-6
Identity = 29/98 (29.59%), Postives = 52/98 (53.06%), Query Frame = 1
Query:   22 GSNALLQKDWQAAVDAFTVVIE------DKPTAEAHVNRGIAYSNLGKLRESYDDCNAAIRLNPKLAEAYFXRARLYVKAKRVERALSDFDKAIELKP 297
            G+      D++ +  ++T+ +       DK  A  + NR  A   LG    + DDC+ A+ L+    +AY  RA+LY + ++++ AL+D+ K +EL P
Sbjct:  138 GNEQFKAGDYEESAKSYTLGLRICPLAFDKDRAVMYSNRAAAKVKLGLKLSAIDDCSKAVELDAGYLKAYLRRAQLYKETEKLDEALADYQKVLELDP 235          
BLAST of mRNA_M-pyrifera_M_contig89572.20769.1 vs. uniprot
Match: A0A8D0G536_SPHPU (Neutrophil cytosolic factor 2 n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0G536_SPHPU)

HSP 1 Score: 52.4 bits (124), Expect = 1.060e-5
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   22 GSNALLQKDWQAAVDAFTVVIEDKPTAEAHVNRGIAYSNLGKLRESYDDCNAAIRLNPKLAEAYFXRARLYVKAKRVERALSDFDKAI 285
            G +A  QKDW AA+DAFT V    P+++   N G  +  LG L E+      +I+ +  LA AYF R  +  K +  + A++DF +A+
Sbjct:   13 GVSAAEQKDWAAALDAFTSV--QNPSSKICFNIGCIHLVLGNLAEAEQAFARSIKCDKHLAVAYFQRGTVSYKTENCQSAINDFKEAL 98          
BLAST of mRNA_M-pyrifera_M_contig89572.20769.1 vs. uniprot
Match: R4FM29_RHOPR (Putative tetratricopeptide repeat protein n=2 Tax=Rhodnius TaxID=13248 RepID=R4FM29_RHOPR)

HSP 1 Score: 52.0 bits (123), Expect = 1.200e-5
Identity = 28/87 (32.18%), Postives = 48/87 (55.17%), Query Frame = 1
Query:   49 WQAAVDAFTVVIE------DKPTAEAHVNRGIAYSNLGKLRESYDDCNAAIRLNPKLAEAYFXRARLYVKAKRVERALSDFDKAIEL 291
            +Q AV  +T+ +       +K  A  + NRG A  ++     + DDC+ AI L+P   +A   RA+LY K  +++ AL+D+ + +EL
Sbjct:  118 FQEAVTTYTLALRTCPLCYNKDRAMLYANRGAAKLSINLTESAIDDCSKAIELDPDYVKALMRRAQLYEKTDKLDEALADYKRILEL 204          
BLAST of mRNA_M-pyrifera_M_contig89572.20769.1 vs. uniprot
Match: A0A164INA7_9CRUS (Putative Tetratricopeptide repeat protein 1 (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164INA7_9CRUS)

HSP 1 Score: 50.4 bits (119), Expect = 1.940e-5
Identity = 26/93 (27.96%), Postives = 49/93 (52.69%), Query Frame = 1
Query:   22 GSNALLQKDWQAAVDAFTVVIEDKPT-AEAHVNRGIAYSNLGKLRESYDDCNAAIRLNPKLAEAYFXRARLYVKAKRVERALSDFDKAIELKP 297
            G+    +  +  A++ ++  +E  P  A    NR IA   + +  E+ +DCN +++L+P   +AY  R        ++E ALSDF K ++++P
Sbjct:   58 GNECFKEGKYDKAIEYYSRAMELAPLDAILPANRAIALIKVNRFAEAEEDCNTSLKLDPTFVKAYHRRGTARANTGKMELALSDFQKVLDIEP 150          
BLAST of mRNA_M-pyrifera_M_contig89572.20769.1 vs. uniprot
Match: A0A1S3JTY5_LINUN (tetratricopeptide repeat protein 1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JTY5_LINUN)

HSP 1 Score: 51.2 bits (121), Expect = 2.380e-5
Identity = 29/100 (29.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:   19 DGSNALLQKDWQAAVDAFTVVIEDKPTAEAHVNRGIAYSN-------LGKLRESYDDCNAAIRLNPKLAEAYFXRARLYVKAKRVERALSDFDKAIELKP 297
            +G++     ++Q A+ ++T  ++  P       R I YSN       L +  ++ +DC  A+ LNP   +A   RA +Y K ++++ AL D+ K IE+ P
Sbjct:  122 NGNSHFKASEFQLAICSYTQALQTCPLC-FQKERAIMYSNRAACRLHLKQYEKAIEDCTKALELNPNYLKALLRRAEMYEKTEKLDEALEDYKKVIEMDP 220          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89572.20769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A0L0GG49_9EUKA4.180e-833.67Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A834XZC8_9HYME3.630e-731.96Uncharacterized protein n=1 Tax=Aphidius gifuensis... [more]
A0A2R5LBI3_9ACAR4.180e-632.29Putative tetratricopeptide repeat protein 1 (Fragm... [more]
A0A7M4F8K4_CROPO4.180e-635.16Neutrophil cytosolic factor 2 n=2 Tax=Crocodylus p... [more]
A0A352FH93_9BACT5.940e-640.79Uncharacterized protein n=1 Tax=Blastocatellia bac... [more]
A0A6L2PFG6_COPFO6.950e-629.59Uncharacterized protein (Fragment) n=1 Tax=Coptote... [more]
A0A8D0G536_SPHPU1.060e-536.36Neutrophil cytosolic factor 2 n=1 Tax=Sphenodon pu... [more]
R4FM29_RHOPR1.200e-532.18Putative tetratricopeptide repeat protein n=2 Tax=... [more]
A0A164INA7_9CRUS1.940e-527.96Putative Tetratricopeptide repeat protein 1 (Fragm... [more]
A0A1S3JTY5_LINUN2.380e-529.00tetratricopeptide repeat protein 1 n=1 Tax=Lingula... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89572contigM-pyrifera_M_contig89572:439..735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog5786.XP_003292400.1
KEGG koko:K09527
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs3XC3K@554915,COG0484@1,KOG0550@2759
COG Functional cat.O
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons1
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.790986-CDS-M-pyrifera_M_contig89572:438..7351622816806.790986-CDS-M-pyrifera_M_contig89572:438..735Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89572 439..735 +
1692278189.8500605-CDS-M-pyrifera_M_contig89572:438..7351692278189.8500605-CDS-M-pyrifera_M_contig89572:438..735Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89572 439..735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89572.20769.1prot_M-pyrifera_M_contig89572.20769.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89572 439..735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89572.20769.1

>prot_M-pyrifera_M_contig89572.20769.1 ID=prot_M-pyrifera_M_contig89572.20769.1|Name=mRNA_M-pyrifera_M_contig89572.20769.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
MATPFEDGSNALLQKDWQAAVDAFTVVIEDKPTAEAHVNRGIAYSNLGKL
RESYDDCNAAIRLNPKLAEAYFNRARLYVKAKRVERALSDFDKAIELKP
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mRNA from alignment at M-pyrifera_M_contig89572:439..735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89572.20769.1 ID=mRNA_M-pyrifera_M_contig89572.20769.1|Name=mRNA_M-pyrifera_M_contig89572.20769.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig89572:439..735+ (Macrocystis pyrifera P11B4 male)
ATGGCGACGCCGTTTGAAGACGGCTCGAATGCACTCTTGCAGAAGGACTG GCAAGCGGCTGTTGATGCGTTCACGGTTGTCATTGAGGACAAGCCGACCG CTGAGGCTCACGTAAACCGTGGCATCGCGTACTCGAATCTCGGCAAGCTC CGAGAGTCTTACGACGATTGCAATGCGGCCATCCGGCTGAACCCCAAGCT GGCCGAAGCGTACTTCAATCGGGCCCGGCTCTACGTGAAGGCGAAACGGG TCGAGCGAGCATTGTCCGACTTCGACAAGGCCATCGAATTGAAGCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89572:439..735+

>mRNA_M-pyrifera_M_contig89572.20769.1 ID=mRNA_M-pyrifera_M_contig89572.20769.1|Name=mRNA_M-pyrifera_M_contig89572.20769.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig89572:439..735+ (Macrocystis pyrifera P11B4 male)
ATGGCGACGCCGTTTGAAGACGGCTCGAATGCACTCTTGCAGAAGGACTG
GCAAGCGGCTGTTGATGCGTTCACGGTTGTCATTGAGGACAAGCCGACCG
CTGAGGCTCACGTAAACCGTGGCATCGCGTACTCGAATCTCGGCAAGCTC
CGAGAGTCTTACGACGATTGCAATGCGGCCATCCGGCTGAACCCCAAGCT
GGCCGAAGCGTACTTCAATCGGGCCCGGCTCTACGTGAAGGCGAAACGGG
TCGAGCGAGCATTGTCCGACTTCGACAAGGCCATCGAATTGAAGCCGATG
GCGACGCCGTTTGAAGACGGCTCGAATGCACTCTTGCAGAAGGACTGGCA
AGCGGCTGTTGATGCGTTCACGGTTGTCATTGAGGACAAGCCGACCGCTG
AGGCTCACGTAAACCGTGGCATCGCGTACTCGAATCTCGGCAAGCTCCGA
GAGTCTTACGACGATTGCAATGCGGCCATCCGGCTGAACCCCAAGCTGGC
CGAAGCGTACTTCAATCGGGCCCGGCTCTACGTGAAGGCGAAACGGGTCG
AGCGAGCATTGTCCGACTTCGACAAGGCCATCGAATTGAAGCCG
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