mRNA_M-pyrifera_M_contig89561.20767.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89561.20767.1
Unique NamemRNA_M-pyrifera_M_contig89561.20767.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89561.20767.1 vs. uniprot
Match: A0A5A8B0N5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A5A8B0N5_9PLAN)

HSP 1 Score: 388 bits (997), Expect = 2.110e-136
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 1
Query:    1 YRKAAEARMMQLRNLTLLEELSRRIVAGWEEAYAGAVQEKHADALLKHEVRTIELPLQTVSEADHERISKEIKAYADDPSKVWIKNWKQRVLDRYDEQQAGTSRPYSMELHTLRLGDIAIATNDFELFTDFGTQMKSRSPALQTFVIQLCGPGSYVPNERAVRGGSYSAIIESNLVGPAGGQVLTEETLKSINAQFKK 594
            YRKAAEARMMQLRNLTLLEELSRRIVAGWEEAYAGAVQEKHADALLKHEVRTIELPLQTVSEADHERISKEIKAYADDPSKVWIKNWKQRVLDRYDEQQAGTSRPYSMELHTLRLGDIAIATNDFELFTDFGTQMKSRSPALQTF+IQLCGPGSYVPNERAVRGGSYSAIIESNLVGPAGGQVLTEETLKSINAQFKK
Sbjct:    2 YRKAAEARMMQLRNLTLLEELSRRIVAGWEEAYAGAVQEKHADALLKHEVRTIELPLQTVSEADHERISKEIKAYADDPSKVWIKNWKQRVLDRYDEQQAGTSRPYSMELHTLRLGDIAIATNDFELFTDFGTQMKSRSPALQTFIIQLCGPGSYVPNERAVRGGSYSAIIESNLVGPAGGQVLTEETLKSINAQFKK 199          
BLAST of mRNA_M-pyrifera_M_contig89561.20767.1 vs. uniprot
Match: A0A6I6AEX7_9PLAN (Ceramidase_alk domain-containing protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AEX7_9PLAN)

HSP 1 Score: 387 bits (995), Expect = 6.450e-132
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 1
Query:    1 YRKAAEARMMQLRNLTLLEELSRRIVAGWEEAYAGAVQEKHADALLKHEVRTIELPLQTVSEADHERISKEIKAYADDPSKVWIKNWKQRVLDRYDEQQAGTSRPYSMELHTLRLGDIAIATNDFELFTDFGTQMKSRSPALQTFVIQLCGPGSYVPNERAVRGGSYSAIIESNLVGPAGGQVLTEETLKSINAQFKK 594
            YRKAAEARMMQLRNLTLLEELSRRIVAGWEEAYAGAVQEKHADALLKHEVRTIELPLQTVSEADHERI+KEIKAYADDPSKVWIKNWKQRVLDRYDEQQAGTSRPYSMELHTLRLGDIAIATNDFELFTDFGTQMKSRSPALQTFVIQLCGPGSYVPNERAVRGGSYSAIIESNLVGPAGGQVLTEETLKSINAQFKK
Sbjct:  283 YRKAAEARMMQLRNLTLLEELSRRIVAGWEEAYAGAVQEKHADALLKHEVRTIELPLQTVSEADHERITKEIKAYADDPSKVWIKNWKQRVLDRYDEQQAGTSRPYSMELHTLRLGDIAIATNDFELFTDFGTQMKSRSPALQTFVIQLCGPGSYVPNERAVRGGSYSAIIESNLVGPAGGQVLTEETLKSINAQFKK 480          
BLAST of mRNA_M-pyrifera_M_contig89561.20767.1 vs. uniprot
Match: A0A517XHQ3_9PLAN (Neutral ceramidase n=9 Tax=Planctomycetaceae TaxID=126 RepID=A0A517XHQ3_9PLAN)

HSP 1 Score: 337 bits (863), Expect = 8.720e-112
Identity = 167/198 (84.34%), Postives = 180/198 (90.91%), Query Frame = 1
Query:    1 YRKAAEARMMQLRNLTLLEELSRRIVAGWEEAYAGAVQEKHADALLKHEVRTIELPLQTVSEADHERISKEIKAYADDPSKVWIKNWKQRVLDRYDEQQAGTSRPYSMELHTLRLGDIAIATNDFELFTDFGTQMKSRSPALQTFVIQLCGPGSYVPNERAVRGGSYSAIIESNLVGPAGGQVLTEETLKSINAQFKK 594
            YRK+AEARMM+LR LTLLEE+SRRIV  WEEAYAGA QEKHAD +LKHEVRTIELP Q V++ D+ R+ KE+ AYADDPSKVWIKNWKQRVLDRYD Q AGT +PY MELHTLRLGD+A+ATNDFELFTDFGTQMKSRSPALQTFVIQLCGPGSYVP+ERAVRGGSYSAIIESN VGP GGQVLTEETLKSIN QFKK
Sbjct:  290 YRKSAEARMMKLRELTLLEEISRRIVNAWEEAYAGAQQEKHADPVLKHEVRTIELPRQIVTDEDYARVKKEVVAYADDPSKVWIKNWKQRVLDRYDAQHAGTEKPYQMELHTLRLGDVALATNDFELFTDFGTQMKSRSPALQTFVIQLCGPGSYVPSERAVRGGSYSAIIESNNVGPQGGQVLTEETLKSINGQFKK 487          
BLAST of mRNA_M-pyrifera_M_contig89561.20767.1 vs. uniprot
Match: A0A518CMS9_9PLAN (Uncharacterized protein n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CMS9_9PLAN)

HSP 1 Score: 299 bits (765), Expect = 4.670e-97
Identity = 149/198 (75.25%), Postives = 165/198 (83.33%), Query Frame = 1
Query:    1 YRKAAEARMMQLRNLTLLEELSRRIVAGWEEAYAGAVQEKHADALLKHEVRTIELPLQTVSEADHERISKEIKAYADDPSKVWIKNWKQRVLDRYDEQQAGTSRPYSMELHTLRLGDIAIATNDFELFTDFGTQMKSRSPALQTFVIQLCGPGSYVPNERAVRGGSYSAIIESNLVGPAGGQVLTEETLKSINAQFKK 594
            YRK AE RM +L   T+LE  + R+V+GWEEAYAGA QEKHAD + +H V+TIELP Q VSE D+ RI KEIK Y  DPSK WIKNWKQ VLDRY EQQAGT +PY MELH++RLGD+AI TNDFELFT+FGTQMKSRSPALQTFVIQLCGPGSYVP ERAV GGSYSA+IESNLVGPAGGQVLTEET+ SIN  F K
Sbjct:  286 YRKKAEERMQKLLGRTVLETFADRVVSGWEEAYAGAEQEKHADLVFEHRVKTIELPKQQVSEEDYVRIQKEIKEYEKDPSKQWIKNWKQSVLDRYKEQQAGTEKPYEMELHSMRLGDVAIVTNDFELFTNFGTQMKSRSPALQTFVIQLCGPGSYVPTERAVGGGSYSAVIESNLVGPAGGQVLTEETVTSINELFTK 483          
BLAST of mRNA_M-pyrifera_M_contig89561.20767.1 vs. uniprot
Match: A6C7J3_9PLAN (Cytochrome c domain-containing protein n=2 Tax=Gimesia maris TaxID=122 RepID=A6C7J3_9PLAN)

HSP 1 Score: 287 bits (734), Expect = 3.650e-86
Identity = 142/198 (71.72%), Postives = 166/198 (83.84%), Query Frame = 1
Query:    1 YRKAAEARMMQLRNLTLLEELSRRIVAGWEEAYAGAVQEKHADALLKHEVRTIELPLQTVSEADHERISKEIKAYADDPSKVWIKNWKQRVLDRYDEQQAGTSRPYSMELHTLRLGDIAIATNDFELFTDFGTQMKSRSPALQTFVIQLCGPGSYVPNERAVRGGSYSAIIESNLVGPAGGQVLTEETLKSINAQFKK 594
            YRK AE RM +L  L+LL+ L++RIVAGWEEAYAGA QEKHA  + +H+V+TI LP Q VS+ D+ RI KE+K+YA D SK  +  WKQ VL+RYD+Q AGT  PY MELHT+RLGDIAIATNDFELF DFGTQMKSRSPALQTFVIQLCGPG+YVP +RAV+GGSYSAIIESNLVGPAGGQVLTE+T++SI+  F K
Sbjct:  286 YRKKAEERMRKLNGLSLLDSLAKRIVAGWEEAYAGAKQEKHATPIFEHQVKTIALPKQKVSDDDYTRIQKEVKSYAKDRSKYRMMKWKQTVLERYDQQHAGTEEPYQMELHTIRLGDIAIATNDFELFNDFGTQMKSRSPALQTFVIQLCGPGTYVPTKRAVQGGSYSAIIESNLVGPAGGQVLTEQTIESISQMFSK 483          
BLAST of mRNA_M-pyrifera_M_contig89561.20767.1 vs. uniprot
Match: A0A5C6CBB2_9BACT (Uncharacterized protein n=1 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6CBB2_9BACT)

HSP 1 Score: 241 bits (616), Expect = 7.770e-75
Identity = 121/193 (62.69%), Postives = 150/193 (77.72%), Query Frame = 1
Query:    1 YRKAAEARMMQLRNLTLLEELSRRIVAGWEEAYAGAVQEKHADALLKHEVRTIELPLQTVSEADHERISKEIKAYADDPSKVWIKNWKQRVLDRYDEQQAGTSRPYSMELHTLRLGDIAIATNDFELFTDFGTQMKSRSPALQTFVIQLCGPGSYVPNERAVRGGSYSAIIESNLVGPAGGQVLTEETLKSIN 579
            Y K AE RM +LR LT LEELS+RIVAGWEEAYAGA QE+HAD  L H+V+TIELP + V+  +   +  ++   + DP +     W Q  +DR++ QQAG S+PY MELHT+RLGDIAIATNDFEL+TD+G QMK+RSPALQTFVIQL G G+Y+P+ERA RGG YSAI+ESN VGP GGQVL E+T++S+N
Sbjct:  268 YSKPAEERMRKLRGLTRLEELSQRIVAGWEEAYAGASQERHADVPLVHKVKTIELPERIVTREEAFALQAKVSDLSTDPKQKRRMLWHQEAVDRFERQQAGESKPYKMELHTIRLGDIAIATNDFELYTDYGIQMKARSPALQTFVIQLAGSGTYLPSERAARGGGYSAIVESNEVGPEGGQVLVEQTIESLN 460          
BLAST of mRNA_M-pyrifera_M_contig89561.20767.1 vs. uniprot
Match: A0A5C6C156_9BACT (Uncharacterized protein n=1 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6C156_9BACT)

HSP 1 Score: 240 bits (613), Expect = 3.370e-74
Identity = 123/192 (64.06%), Postives = 146/192 (76.04%), Query Frame = 1
Query:    1 YRKAAEARMMQLRNLTLLEELSRRIVAGWEEAYAGAVQEKHADALLKHEVRTIELPLQTVSEADHERISKEIKAYADDPSKVWIKNWKQRVLDRYDEQQAGTSRPYSMELHTLRLGDIAIATNDFELFTDFGTQMKSRSPALQTFVIQLCGPGSYVPNERAVRGGSYSAIIESNLVGPAGGQVLTEETLKSI 576
            Y KAAE RM +LR L  LEE++RRIV GWEEAYAGA QE+H D  L H+V+T+ LP + V+E + ER+   +   A DP       W+Q VLDRY+ QQ+G   PY MELHT+RLGDIAIATNDFELFTDFG QMK+RSPALQTFVIQL GPG Y+P+ERA RGG YSAIIESNLVG  GGQVLT+ T+ ++
Sbjct:  288 YNKAAEERMRKLRGLDRLEEIARRIVNGWEEAYAGASQERHTDVPLVHQVQTVSLPERMVTEQEAERLKAAVAVSAKDPKLFRKMTWQQTVLDRYERQQSGKLTPYQMELHTIRLGDIAIATNDFELFTDFGIQMKARSPALQTFVIQLTGPGFYIPSERAQRGGGYSAIIESNLVGYKGGQVLTDLTVDAL 479          
BLAST of mRNA_M-pyrifera_M_contig89561.20767.1 vs. uniprot
Match: A0A7Y5CAE6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5CAE6_9BACT)

HSP 1 Score: 239 bits (610), Expect = 7.740e-74
Identity = 120/193 (62.18%), Postives = 145/193 (75.13%), Query Frame = 1
Query:    1 YRKAAEARMMQLRNLTLLEELSRRIVAGWEEAYAGAVQEKHADALLKHEVRTIELPLQTVSEADHERISKEIKAYADDPSKVWIKNWKQRVLDRYDEQQAGTSRPYSMELHTLRLGDIAIATNDFELFTDFGTQMKSRSPALQTFVIQLCGPGSYVPNERAVRGGSYSAIIESNLVGPAGGQVLTEETLKSIN 579
            Y K AE RM +LR LT LEEL+RRIV GWEEAY GA QEKH D +  H V TIELPL+ V++ ++     + + Y+ D SK  I  W Q  +DRY+ Q AGT+ PY M LH +RLGD+AIATNDFEL+T+FG QMKSRSPALQTFVIQL GPG+YVP  RA RGG YSAI+ESN+VG  GGQVL E+T+++IN
Sbjct:  282 YNKRAEERMRELRKLTRLEELARRIVQGWEEAYDGARQEKHGDVVFAHRVETIELPLRIVTDEEYTAAKAKAEEYSKDASKRRIMVWHQDAVDRYERQNAGTATPYKMMLHAIRLGDVAIATNDFELYTEFGVQMKSRSPALQTFVIQLAGPGTYVPTPRAQRGGGYSAIVESNVVGAEGGQVLVEKTVEAIN 474          
BLAST of mRNA_M-pyrifera_M_contig89561.20767.1 vs. uniprot
Match: A0A517QJV3_9PLAN (Uncharacterized protein n=2 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QJV3_9PLAN)

HSP 1 Score: 239 bits (610), Expect = 9.010e-74
Identity = 122/198 (61.62%), Postives = 147/198 (74.24%), Query Frame = 1
Query:    1 YRKAAEARMMQLRNLTLLEELSRRIVAGWEEAYAGAVQEKHADALLKHEVRTIELPLQTVSEADHERISKEIKAYADDPSKVWIKNWKQRVLDRYDEQQAGTSRPYSMELHTLRLGDIAIATNDFELFTDFGTQMKSRSPALQTFVIQLCGPGSYVPNERAVRGGSYSAIIESNLVGPAGGQVLTEETLKSINAQFKK 594
            Y K AE RM +LR LT L+ELSRRIV+ WEEAY GA +E+H+DALL H+V+ IELP + V+E +   I K++   + DP       W Q  +DR+  QQAG   PY MELHT+RLGDIAIATNDFELFTDFG QMK RSPALQTF+IQL GPG+YVP ERA +GG YSAI+ESN VG  GGQVL E+TLK++N  + K
Sbjct:  288 YSKPAEERMRKLRGLTRLQELSRRIVSAWEEAYEGASKERHSDALLVHKVQMIELPERMVTETEATAIGKKVAELSKDPKNQRRTLWHQAAVDRFHRQQAGELNPYEMELHTIRLGDIAIATNDFELFTDFGIQMKGRSPALQTFIIQLAGPGTYVPTERAAKGGGYSAIVESNNVGAEGGQVLVEKTLKALNEIWDK 485          
BLAST of mRNA_M-pyrifera_M_contig89561.20767.1 vs. uniprot
Match: A0A2E0SG67_9PLAN (Uncharacterized protein n=1 Tax=Planctomyces sp. TaxID=37635 RepID=A0A2E0SG67_9PLAN)

HSP 1 Score: 237 bits (605), Expect = 4.440e-73
Identity = 123/196 (62.76%), Postives = 144/196 (73.47%), Query Frame = 1
Query:    1 YRKAAEARMMQLRNLTLLEELSRRIVAGWEEAYAGAVQEKHADALLKHEVRTIELPLQTVSEADHERISKEIKAYADDPSKVWIKNWKQRVLDRYDEQQAGTSRPYSMELHTLRLGDIAIATNDFELFTDFGTQMKSRSPALQTFVIQLCGPGSYVPNERAVRGGSYSAIIESNLVGPAGGQVLTEETLKSINAQF 588
            YRKAA+ RM +L   T  E  +RRIV GWEEAYAGA ++K    L KH V+TIELP Q VSE +  RI +E+KA  D PS +  + WKQ VLDRY  QQAGT  PY MELH +RLGDI IATNDFELF +FG QMK+RSPA+QTFVIQLCG GSY+P  RA +GG YSA+IESN VGP GG+VL E TL+ I + F
Sbjct:  285 YRKAAQKRMEKLTGQTATETYARRIVTGWEEAYAGAKEDKWTSPLFKHVVKTIELPKQQVSEEERIRIEEEVKAL-DKPSDLRRRQWKQSVLDRYAAQQAGTEEPYEMELHVIRLGDIVIATNDFELFNEFGLQMKARSPAVQTFVIQLCGAGSYIPTARAYQGGGYSAVIESNDVGPEGGRVLVERTLEEIQSLF 479          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89561.20767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8B0N5_9PLAN2.110e-13699.49Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A6I6AEX7_9PLAN6.450e-13299.49Ceramidase_alk domain-containing protein n=8 Tax=G... [more]
A0A517XHQ3_9PLAN8.720e-11284.34Neutral ceramidase n=9 Tax=Planctomycetaceae TaxID... [more]
A0A518CMS9_9PLAN4.670e-9775.25Uncharacterized protein n=1 Tax=Polystyrenella lon... [more]
A6C7J3_9PLAN3.650e-8671.72Cytochrome c domain-containing protein n=2 Tax=Gim... [more]
A0A5C6CBB2_9BACT7.770e-7562.69Uncharacterized protein n=1 Tax=Novipirellula gale... [more]
A0A5C6C156_9BACT3.370e-7464.06Uncharacterized protein n=1 Tax=Novipirellula gale... [more]
A0A7Y5CAE6_9BACT7.740e-7462.18Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A517QJV3_9PLAN9.010e-7461.62Uncharacterized protein n=2 Tax=Thalassoglobus pol... [more]
A0A2E0SG67_9PLAN4.440e-7362.76Uncharacterized protein n=1 Tax=Planctomyces sp. T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89561contigM-pyrifera_M_contig89561:3..599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score280.4
Seed ortholog evalue6.2e-73
Seed eggNOG ortholog344747.PM8797T_29563
KEGG rclassRC02794,RC03151,RC03152
KEGG koko:K02305,ko:K08738
KEGG TC3.D.4.10,3.D.4.6
KEGG ReactionR00294,R10151
KEGG Pathwayko00910,ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00910,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416
KEGG ModuleM00529,M00595
Hectar predicted targeting categoryother localisation
EggNOG free text desc.polysaccharide deacetylase
EggNOG OGs2IXJQ@203682,COG1413@1,COG1413@2,COG2133@1,COG2133@2,COG3356@1,COG3356@2,COG3474@1,COG3474@2
COG Functional cat.C
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size597
Cds size573
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.6660736-UTR-M-pyrifera_M_contig89561:2..261622816806.6660736-UTR-M-pyrifera_M_contig89561:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89561 3..26 +
1692278189.7637498-UTR-M-pyrifera_M_contig89561:2..261692278189.7637498-UTR-M-pyrifera_M_contig89561:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89561 3..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.6774015-CDS-M-pyrifera_M_contig89561:26..5991622816806.6774015-CDS-M-pyrifera_M_contig89561:26..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89561 27..599 +
1692278189.7845438-CDS-M-pyrifera_M_contig89561:26..5991692278189.7845438-CDS-M-pyrifera_M_contig89561:26..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89561 27..599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89561.20767.1prot_M-pyrifera_M_contig89561.20767.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89561 27..599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89561.20767.1

>prot_M-pyrifera_M_contig89561.20767.1 ID=prot_M-pyrifera_M_contig89561.20767.1|Name=mRNA_M-pyrifera_M_contig89561.20767.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=191bp
MMQLRNLTLLEELSRRIVAGWEEAYAGAVQEKHADALLKHEVRTIELPLQ
TVSEADHERISKEIKAYADDPSKVWIKNWKQRVLDRYDEQQAGTSRPYSM
ELHTLRLGDIAIATNDFELFTDFGTQMKSRSPALQTFVIQLCGPGSYVPN
ERAVRGGSYSAIIESNLVGPAGGQVLTEETLKSINAQFKK*
back to top

mRNA from alignment at M-pyrifera_M_contig89561:3..599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89561.20767.1 ID=mRNA_M-pyrifera_M_contig89561.20767.1|Name=mRNA_M-pyrifera_M_contig89561.20767.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=597bp|location=Sequence derived from alignment at M-pyrifera_M_contig89561:3..599+ (Macrocystis pyrifera P11B4 male)
TACCGCAAAGCAGCCGAAGCCCGCATGATGCAGCTCCGCAACCTGACACT GCTCGAAGAACTCTCGCGGCGGATCGTCGCCGGCTGGGAAGAAGCCTACG CCGGTGCCGTGCAGGAAAAACACGCCGACGCACTGCTCAAGCACGAAGTC CGCACCATCGAACTCCCGCTGCAGACCGTCAGTGAAGCCGACCACGAACG AATTTCCAAAGAGATCAAAGCCTACGCCGACGATCCCTCCAAAGTCTGGA TCAAAAACTGGAAACAGCGCGTCCTCGATCGCTACGATGAACAGCAGGCC GGCACCTCCCGCCCTTATTCGATGGAACTGCACACCCTTCGCTTGGGCGA CATCGCCATCGCCACGAACGACTTCGAACTCTTCACCGATTTCGGCACCC AGATGAAGTCCCGCAGCCCGGCCCTGCAGACCTTCGTCATCCAGCTCTGC GGCCCCGGTTCTTACGTACCGAATGAAAGAGCCGTCCGCGGCGGCAGCTA CAGCGCCATCATCGAGAGTAACCTCGTCGGCCCCGCCGGCGGCCAGGTCC TCACCGAAGAAACCCTCAAGTCCATCAACGCACAGTTCAAGAAGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig89561:3..599+

>mRNA_M-pyrifera_M_contig89561.20767.1 ID=mRNA_M-pyrifera_M_contig89561.20767.1|Name=mRNA_M-pyrifera_M_contig89561.20767.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1146bp|location=Sequence derived from alignment at M-pyrifera_M_contig89561:3..599+ (Macrocystis pyrifera P11B4 male)
ATGATGCAGCTCCGCAACCTGACACTGCTCGAAGAACTCTCGCGGCGGAT
CGTCGCCGGCTGGGAAGAAGCCTACGCCGGTGCCGTGCAGGAAAAACACG
CCGACGCACTGCTCAAGCACGAAGTCCGCACCATCGAACTCCCGCTGCAG
ACCGTCAGTGAAGCCGACCACGAACGAATTTCCAAAGAGATCAAAGCCTA
CGCCGACGATCCCTCCAAAGTCTGGATCAAAAACTGGAAACAGCGCGTCC
TCGATCGCTACGATGAACAGCAGGCCGGCACCTCCCGCCCTTATTCGATG
GAACTGCACACCCTTCGCTTGGGCGACATCGCCATCGCCACGAACGACTT
CGAACTCTTCACCGATTTCGGCACCCAGATGAAGTCCCGCAGCCCGGCCC
TGCAGACCTTCGTCATCCAGCTCTGCGGCCCCGGTTCTTACGTACCGAAT
GAAAGAGCCGTCCGCGGCGGCAGCTACAGCGCCATCATCGAGAGTAACCT
CGTCGGCCCCGCCGGCGGCCAGGTCCTCACCGAAGAAACCCTCAAGTCCA
TCAACGCACAGTTCAAGAAGTAGATGATGCAGCTCCGCAACCTGACACTG
CTCGAAGAACTCTCGCGGCGGATCGTCGCCGGCTGGGAAGAAGCCTACGC
CGGTGCCGTGCAGGAAAAACACGCCGACGCACTGCTCAAGCACGAAGTCC
GCACCATCGAACTCCCGCTGCAGACCGTCAGTGAAGCCGACCACGAACGA
ATTTCCAAAGAGATCAAAGCCTACGCCGACGATCCCTCCAAAGTCTGGAT
CAAAAACTGGAAACAGCGCGTCCTCGATCGCTACGATGAACAGCAGGCCG
GCACCTCCCGCCCTTATTCGATGGAACTGCACACCCTTCGCTTGGGCGAC
ATCGCCATCGCCACGAACGACTTCGAACTCTTCACCGATTTCGGCACCCA
GATGAAGTCCCGCAGCCCGGCCCTGCAGACCTTCGTCATCCAGCTCTGCG
GCCCCGGTTCTTACGTACCGAATGAAAGAGCCGTCCGCGGCGGCAGCTAC
AGCGCCATCATCGAGAGTAACCTCGTCGGCCCCGCCGGCGGCCAGGTCCT
CACCGAAGAAACCCTCAAGTCCATCAACGCACAGTTCAAGAAGTAG
back to top