mRNA_M-pyrifera_M_contig89557.20764.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89557.20764.1
Unique NamemRNA_M-pyrifera_M_contig89557.20764.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89557.20764.1 vs. uniprot
Match: A0A7S0K5P1_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K5P1_CAFRO)

HSP 1 Score: 102 bits (253), Expect = 7.860e-23
Identity = 57/110 (51.82%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:   55 PLRRLTGVVLLLHMEYTNRRPWELPQSSPRCDISVEVLPEAWGYMGVEQVFDFELDRMVTRES---SGVLLQFVPAGSVGTPSLFSIVLRLIEAMVLFNLAAIITNQMAE 375
            P  RLTG VL++ M YTN R WELP   P C ++VE LP AWG+MG E       D  V R S   +GV LQF+ +GS+G   +F IVLRLIEA VLF++AA  T+ +AE
Sbjct:  241 PTFRLTGAVLMVRMVYTNLRRWELPYYRPLCTVTVEALPVAWGFMGSEVQPVVAADGTVKRASVQRTGVRLQFIQSGSIGRLDIFQIVLRLIEASVLFSIAAFATDFVAE 350
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BLAST of mRNA_M-pyrifera_M_contig89557.20764.1 vs. uniprot
Match: A0A5A8DVE8_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DVE8_CAFRO)

HSP 1 Score: 100 bits (248), Expect = 1.240e-22
Identity = 56/110 (50.91%), Postives = 69/110 (62.73%), Query Frame = 1 
Query:   55 PLRRLTGVVLLLHMEYTNRRPWELPQSSPRCDISVEVLPEAWGYMGVEQVFDFELDRMVTRES---SGVLLQFVPAGSVGTPSLFSIVLRLIEAMVLFNLAAIITNQMAE 375
            P  RLTG VL++ M YTN R WELP   P C ++VE LP AWG+MG E       D  V R S   +GV LQF+ +GS+G   +F IVLRLIEA VLF++AA  T+ M  
Sbjct:  241 PTFRLTGAVLMVRMVYTNLRRWELPYYRPLCTVTVEALPVAWGFMGSEVQPVVAADGTVKRASVQRTGVRLQFIQSGSIGRLDIFQIVLRLIEASVLFSIAAFATDFMGR 350
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BLAST of mRNA_M-pyrifera_M_contig89557.20764.1 vs. uniprot
Match: A0A7S0QMA0_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QMA0_9CRYP)

HSP 1 Score: 83.2 bits (204), Expect = 3.040e-16
Identity = 47/129 (36.43%), Postives = 74/129 (57.36%), Query Frame = 1 
Query:    1 LDEVNEQPWLRQGQVEEQPLRRLTGVVLLLHMEYTNRRPWEL---PQS-SPRCDISVEVLPEAWGYMGVEQVFDFELDRMVTRESSGVLLQFVPAGSVGTPSLFSIVLRLIEAMVLFNLAAIITNQMAE 375
            LD  N QPW R G++ + P  RL+GVV+++ + Y+N R +E    P+S +P   ++VE LP AWG++G  Q  D      V+   +G+ +Q + +G  G   L  +V R++E +VLF +AA  T   A 
Sbjct:  215 LDARNSQPWFRGGELSQSPFYRLSGVVIIMRIAYSNFRDYEFAGSPRSGAPLARVTVESLPNAWGFLGRAQALDPATLLPVSVRRTGIKVQLILSGQAGRFDLMELVRRVLEGVVLFGVAAYGTELAAR 343
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BLAST of mRNA_M-pyrifera_M_contig89557.20764.1 vs. uniprot
Match: A0A7S0QC05_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QC05_9CRYP)

HSP 1 Score: 73.2 bits (178), Expect = 2.450e-14
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:   79 VLLLHMEYTNRRPWELPQSS----PRCDISVEVLPEAWGYMGVEQVFDFELDRMVTRESSGVLLQFVPAGSVGTPSLFSIVLRLIEAMVLFNLAAIITNQMAEGF 381
            V+++ + Y+N RP+E   SS    P   ++VEVLP AWG++G  Q  D E    +T + +GV +Q + +G VG      +V RL+E +VLF +AA  T  +A  F
Sbjct:    1 VVIMRIVYSNLRPYEFAGSSSSGKPAAKVTVEVLPNAWGFVGASQTIDPETKMPITIQRTGVKVQLIFSGQVGQFDYMMLVRRLVEGVVLFGMAAFGTEIVARWF 105
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89557.20764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S0K5P1_CAFRO7.860e-2351.82Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8DVE8_CAFRO1.240e-2250.91Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A7S0QMA0_9CRYP3.040e-1636.43Hypothetical protein (Fragment) n=2 Tax=Cryptomona... [more]
A0A7S0QC05_9CRYP2.450e-1438.10Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89557contigM-pyrifera_M_contig89557:153..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.4317636-CDS-M-pyrifera_M_contig89557:152..5331622816806.4317636-CDS-M-pyrifera_M_contig89557:152..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89557 153..533 -
1692278189.6004174-CDS-M-pyrifera_M_contig89557:152..5331692278189.6004174-CDS-M-pyrifera_M_contig89557:152..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89557 153..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89557.20764.1prot_M-pyrifera_M_contig89557.20764.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89557 153..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89557.20764.1

>prot_M-pyrifera_M_contig89557.20764.1 ID=prot_M-pyrifera_M_contig89557.20764.1|Name=mRNA_M-pyrifera_M_contig89557.20764.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
LDEVNEQPWLRQGQVEEQPLRRLTGVVLLLHMEYTNRRPWELPQSSPRCD
ISVEVLPEAWGYMGVEQVFDFELDRMVTRESSGVLLQFVPAGSVGTPSLF
SIVLRLIEAMVLFNLAAIITNQMAEGF
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mRNA from alignment at M-pyrifera_M_contig89557:153..533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89557.20764.1 ID=mRNA_M-pyrifera_M_contig89557.20764.1|Name=mRNA_M-pyrifera_M_contig89557.20764.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig89557:153..533- (Macrocystis pyrifera P11B4 male)
CTCGACGAAGTGAACGAGCAGCCGTGGCTGCGCCAAGGGCAGGTGGAAGA
GCAGCCTCTGCGTCGACTTACGGGAGTGGTGCTGCTGTTGCACATGGAGT
ACACCAACCGCCGTCCCTGGGAGCTTCCACAGTCCTCTCCTCGCTGTGAC
ATTTCTGTGGAAGTGCTGCCGGAAGCGTGGGGCTACATGGGAGTGGAGCA
AGTGTTTGACTTCGAGCTGGACAGAATGGTGACGAGGGAATCTTCAGGAG
TGCTGCTCCAATTCGTCCCAGCAGGGTCCGTGGGAACACCCTCCCTCTTC
TCCATCGTCCTCCGACTCATCGAAGCCATGGTCCTCTTCAACCTCGCCGC
AATCATCACCAACCAAATGGCAGAAGGATTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89557:153..533-

>mRNA_M-pyrifera_M_contig89557.20764.1 ID=mRNA_M-pyrifera_M_contig89557.20764.1|Name=mRNA_M-pyrifera_M_contig89557.20764.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig89557:153..533- (Macrocystis pyrifera P11B4 male)
CTCGACGAAGTGAACGAGCAGCCGTGGCTGCGCCAAGGGCAGGTGGAAGA
GCAGCCTCTGCGTCGACTTACGGGAGTGGTGCTGCTGTTGCACATGGAGT
ACACCAACCGCCGTCCCTGGGAGCTTCCACAGTCCTCTCCTCGCTGTGAC
ATTTCTGTGGAAGTGCTGCCGGAAGCGTGGGGCTACATGGGAGTGGAGCA
AGTGTTTGACTTCGAGCTGGACAGAATGGTGACGAGGGAATCTTCAGGAG
TGCTGCTCCAATTCGTCCCAGCAGGGTCCGTGGGAACACCCTCCCTCTTC
TCCATCGTCCTCCGACTCATCGAAGCCATGGTCCTCTTCAACCTCGCCGC
AATCATCACCAACCAAATGGCAGAAGGATTCCTCGACGAAGTGAACGAGC
AGCCGTGGCTGCGCCAAGGGCAGGTGGAAGAGCAGCCTCTGCGTCGACTT
ACGGGAGTGGTGCTGCTGTTGCACATGGAGTACACCAACCGCCGTCCCTG
GGAGCTTCCACAGTCCTCTCCTCGCTGTGACATTTCTGTGGAAGTGCTGC
CGGAAGCGTGGGGCTACATGGGAGTGGAGCAAGTGTTTGACTTCGAGCTG
GACAGAATGGTGACGAGGGAATCTTCAGGAGTGCTGCTCCAATTCGTCCC
AGCAGGGTCCGTGGGAACACCCTCCCTCTTCTCCATCGTCCTCCGACTCA
TCGAAGCCATGGTCCTCTTCAACCTCGCCGCAATCATCACCAACCAAATG
GCAGAAGGATTC
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