mRNA_M-pyrifera_M_contig89537.20757.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89537.20757.1
Unique NamemRNA_M-pyrifera_M_contig89537.20757.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89537.20757.1 vs. uniprot
Match: A0A6V7IZ85_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7IZ85_9HYME)

HSP 1 Score: 58.2 bits (139), Expect = 8.400e-10
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1
Query:    1 GARTVIHPCSRVEEGAVVPPDSVIAPFSIWKGFPARPLAQQLPECWAELQTRATREFYDHFVAKP 195
            G R ++  C  +E+GAVVPP++++  F+ + G PA P+   LPEC  EL    T+ +Y HF+  P
Sbjct:    1 GRRCILKDCCYIEDGAVVPPETIVPSFTKFAGNPAVPV-DDLPECTLELMVDYTKNYYQHFLPGP 64          
BLAST of mRNA_M-pyrifera_M_contig89537.20757.1 vs. uniprot
Match: A0A6P3X098_DINQU (dynactin subunit 5 n=9 Tax=Aculeata TaxID=7434 RepID=A0A6P3X098_DINQU)

HSP 1 Score: 59.3 bits (142), Expect = 3.340e-9
Identity = 25/62 (40.32%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 GARTVIHPCSRVEEGAVVPPDSVIAPFSIWKGFPARPLAQQLPECWAELQTRATREFYDHFV 186
            G R+V+  C  +E+GAVVPP++++  F+ + G PA    ++LPEC  +L T  T+ +Y+HF+
Sbjct:  117 GRRSVLKDCCYIEDGAVVPPETIVPSFTRFAGSPAT-CVEELPECTVDLMTDFTKNYYEHFL 177          
BLAST of mRNA_M-pyrifera_M_contig89537.20757.1 vs. uniprot
Match: A0A2A3EMM8_APICC (Dynactin subunit n=1 Tax=Apis cerana cerana TaxID=94128 RepID=A0A2A3EMM8_APICC)

HSP 1 Score: 57.0 bits (136), Expect = 1.410e-8
Identity = 26/66 (39.39%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    1 GARTVIHPCSRVEEGAVVPPDSVIAPFSIWKGFPARPLAQQLPECWAELQTRATREFYDHFVAKPA 198
            G R V+  C  +E+GAVVPP++V+  F+ + G PA+   + LPEC  +L    T+ +Y HF+   A
Sbjct:   81 GRRCVLKDCCYIEDGAVVPPETVVPSFTRFAGNPAK-CVEDLPECTLDLMLEFTKNYYQHFLPSTA 145          
BLAST of mRNA_M-pyrifera_M_contig89537.20757.1 vs. uniprot
Match: UPI000C715D7D (dynactin subunit 5 isoform X1 n=1 Tax=Orussus abietinus TaxID=222816 RepID=UPI000C715D7D)

HSP 1 Score: 56.6 bits (135), Expect = 3.710e-8
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 GARTVIHPCSRVEEGAVVPPDSVIAPFSIWKGFPARPLAQQLPECWAELQTRATREFYDHFV 186
            G R ++  CS +E+GAVVPP++VI  F+ + G PA    + LPEC  +L    T+++Y HF+
Sbjct:  120 GRRCILKDCSYIEDGAVVPPETVIPSFTRFSGNPAV-CVEDLPECTQDLMLDFTKDYYQHFL 180          
BLAST of mRNA_M-pyrifera_M_contig89537.20757.1 vs. uniprot
Match: A0A6V7H959_9HYME (Hypothetical protein (Fragment) n=1 Tax=Heterotrigona itama TaxID=395501 RepID=A0A6V7H959_9HYME)

HSP 1 Score: 56.6 bits (135), Expect = 3.960e-8
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 GARTVIHPCSRVEEGAVVPPDSVIAPFSIWKGFPARPLAQQLPECWAELQTRATREFYDHFV 186
            G R V+  C  +E+GAVVPP++VI  F+ + G PA+   + LPEC  +L    T+ +Y HF+
Sbjct:  128 GRRCVLKDCCYIEDGAVVPPETVIPSFTRFAGNPAK-CVEDLPECTLDLMLEFTKNYYQHFL 188          
BLAST of mRNA_M-pyrifera_M_contig89537.20757.1 vs. uniprot
Match: UPI000623B6F1 (dynactin subunit 5 isoform X1 n=3 Tax=Linepithema humile TaxID=83485 RepID=UPI000623B6F1)

HSP 1 Score: 56.6 bits (135), Expect = 5.400e-8
Identity = 25/62 (40.32%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    1 GARTVIHPCSRVEEGAVVPPDSVIAPFSIWKGFPARPLAQQLPECWAELQTRATREFYDHFV 186
            G R+V+  C  +E+GAVVPP++V+  F+ + G PA    ++LPEC  +L    T+ +Y+HF+
Sbjct:  152 GRRSVLKDCCYIEDGAVVPPETVVPSFTRFAGNPAT-CVEELPECTLDLMIDFTKNYYEHFL 212          
BLAST of mRNA_M-pyrifera_M_contig89537.20757.1 vs. uniprot
Match: A0A7M6USL0_NASVI (Uncharacterized protein n=5 Tax=Chalcidoidea TaxID=7422 RepID=A0A7M6USL0_NASVI)

HSP 1 Score: 55.5 bits (132), Expect = 9.920e-8
Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 GARTVIHPCSRVEEGAVVPPDSVIAPFSIWKGFPARPLAQQLPECWAELQTRATREFYDHFV 186
            G R+++  C  +E+GAV+PP++V+  F+ + G PA+   + LPEC  +L    T+ +Y HF+
Sbjct:  117 GRRSILKSCCYIEDGAVIPPETVVPSFTRFAGNPAK-CVEDLPECTLDLMLDFTKNYYQHFL 177          
BLAST of mRNA_M-pyrifera_M_contig89537.20757.1 vs. uniprot
Match: A0A7J8IX26_MOLMO (Dynactin subunit 5 n=2 Tax=Microchiroptera TaxID=30560 RepID=A0A7J8IX26_MOLMO)

HSP 1 Score: 50.4 bits (119), Expect = 2.260e-6
Identity = 21/62 (33.87%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    1 GARTVIHPCSRVEEGAVVPPDSVIAPFSIWKGFPARPLAQQLPECWAELQTRATREFYDHFV 186
            G R V+  C ++ +  V+PP++V+ PF+++ G P    + +LPEC  EL    T+ +Y  F+
Sbjct:   40 GRRCVLKDCCKILDNTVLPPETVVPPFTVFSGCPGL-FSGELPECTQELMIDVTKSYYQKFL 100          
BLAST of mRNA_M-pyrifera_M_contig89537.20757.1 vs. uniprot
Match: A0A6P6BLB3_PTEVA (dynactin subunit 5 n=1 Tax=Pteropus vampyrus TaxID=132908 RepID=A0A6P6BLB3_PTEVA)

HSP 1 Score: 51.6 bits (122), Expect = 4.230e-6
Identity = 22/62 (35.48%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    1 GARTVIHPCSRVEEGAVVPPDSVIAPFSIWKGFPARPLAQQLPECWAELQTRATREFYDHFV 186
            G R V+  C R+ +  V+PP++V+ PF+++ G P    + +LPEC  EL    T+ +Y  F+
Sbjct:  161 GRRCVLKDCCRILDNTVLPPETVVPPFTVFSGCPGL-FSGELPECTQELMIDVTKSYYQKFL 221          
BLAST of mRNA_M-pyrifera_M_contig89537.20757.1 vs. uniprot
Match: A0A8C7K3Q5_ONCKI (Uncharacterized protein n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7K3Q5_ONCKI)

HSP 1 Score: 49.7 bits (117), Expect = 6.180e-6
Identity = 20/63 (31.75%), Postives = 38/63 (60.32%), Query Frame = 1
Query:    1 GARTVIHPCSRVEEGAVVPPDSVIAPFSIWKGFPARPLAQQLPECWAELQTRATREFYDHFVA 189
            G R V+  C ++ +  V+PP++V+ PF+++ G P    + +LPEC  +L    T+ +Y  F++
Sbjct:   56 GRRCVLKDCCKILDNTVLPPETVVPPFTVFSGCPGL-FSGELPECTQDLMIDVTKSYYQKFLS 117          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89537.20757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6V7IZ85_9HYME8.400e-1040.00Uncharacterized protein (Fragment) n=1 Tax=Bracon ... [more]
A0A6P3X098_DINQU3.340e-940.32dynactin subunit 5 n=9 Tax=Aculeata TaxID=7434 Rep... [more]
A0A2A3EMM8_APICC1.410e-839.39Dynactin subunit n=1 Tax=Apis cerana cerana TaxID=... [more]
UPI000C715D7D3.710e-841.94dynactin subunit 5 isoform X1 n=1 Tax=Orussus abie... [more]
A0A6V7H959_9HYME3.960e-841.94Hypothetical protein (Fragment) n=1 Tax=Heterotrig... [more]
UPI000623B6F15.400e-840.32dynactin subunit 5 isoform X1 n=3 Tax=Linepithema ... [more]
A0A7M6USL0_NASVI9.920e-837.10Uncharacterized protein n=5 Tax=Chalcidoidea TaxID... [more]
A0A7J8IX26_MOLMO2.260e-633.87Dynactin subunit 5 n=2 Tax=Microchiroptera TaxID=3... [more]
A0A6P6BLB3_PTEVA4.230e-635.48dynactin subunit 5 n=1 Tax=Pteropus vampyrus TaxID... [more]
A0A8C7K3Q5_ONCKI6.180e-631.75Uncharacterized protein n=1 Tax=Oncorhynchus kisut... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89537contigM-pyrifera_M_contig89537:96..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816805.973666-CDS-M-pyrifera_M_contig89537:95..2181622816805.973666-CDS-M-pyrifera_M_contig89537:95..218Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89537 96..218 +
1692278189.3217177-CDS-M-pyrifera_M_contig89537:95..2181692278189.3217177-CDS-M-pyrifera_M_contig89537:95..218Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89537 96..218 +
1622816805.9874165-CDS-M-pyrifera_M_contig89537:329..4071622816805.9874165-CDS-M-pyrifera_M_contig89537:329..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89537 330..407 +
1692278189.333844-CDS-M-pyrifera_M_contig89537:329..4071692278189.333844-CDS-M-pyrifera_M_contig89537:329..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89537 330..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89537.20757.1prot_M-pyrifera_M_contig89537.20757.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89537 96..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89537.20757.1

>prot_M-pyrifera_M_contig89537.20757.1 ID=prot_M-pyrifera_M_contig89537.20757.1|Name=mRNA_M-pyrifera_M_contig89537.20757.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
GARTVIHPCSRVEEGAVVPPDSVIAPFSIWKGFPARPLAQQLPECWAELQ
TRATREFYDHFVAKPA*
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mRNA from alignment at M-pyrifera_M_contig89537:96..407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89537.20757.1 ID=mRNA_M-pyrifera_M_contig89537.20757.1|Name=mRNA_M-pyrifera_M_contig89537.20757.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig89537:96..407+ (Macrocystis pyrifera P11B4 male)
GGCGCACGCACGGTGATCCACCCCTGCAGCAGGGTAGAGGAGGGCGCCGT GGTGCCGCCCGACTCGGTCATCGCGCCGTTCAGCATCTGGAAGGGCTTCC CGGCGCGGCCGCTGGCCCAGCAGGTGGGCGAACTGCCTGCACTGGCCGCC GAGAGCTTTGCCAAGTGCCCGCGGCCGCCCGCGGCCCTCTACGCTGCCGC CGTGGACCGCTGCCTTCTCGAAGGCGCTACGGAGCTGCCCGAGTGCTGGG CCGAGCTGCAGACGCGCGCCACCCGCGAGTTCTACGACCACTTCGTCGCC AAGCCTGCTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89537:96..407+

>mRNA_M-pyrifera_M_contig89537.20757.1 ID=mRNA_M-pyrifera_M_contig89537.20757.1|Name=mRNA_M-pyrifera_M_contig89537.20757.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig89537:96..407+ (Macrocystis pyrifera P11B4 male)
GGCGCACGCACGGTGATCCACCCCTGCAGCAGGGTAGAGGAGGGCGCCGT
GGTGCCGCCCGACTCGGTCATCGCGCCGTTCAGCATCTGGAAGGGCTTCC
CGGCGCGGCCGCTGGCCCAGCAGGGCGCACGCACGGTGATCCACCCCTGC
AGCAGGGTAGAGGAGGGCGCCGTGGTGCCGCCCGACTCGGTCATCGCGCC
GTTCAGCATCTGGAAGGGCTTCCCGGCGCGGCCGCTGGCCCAGCAGCTGC
CCGAGTGCTGGGCCGAGCTGCAGACGCGCGCCACCCGCGAGTTCTACGAC
CACTTCGTCGCCAAGCCTGCTTAGCTGCCCGAGTGCTGGGCCGAGCTGCA
GACGCGCGCCACCCGCGAGTTCTACGACCACTTCGTCGCCAAGCCTGCTT
AG
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