mRNA_M-pyrifera_M_contig89532.20754.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89532.20754.1
Unique NamemRNA_M-pyrifera_M_contig89532.20754.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89532.20754.1 vs. uniprot
Match: A0A7Y2N8M0_9ACTN (CDP-alcohol phosphatidyltransferase family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N8M0_9ACTN)

HSP 1 Score: 95.1 bits (235), Expect = 2.330e-22
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 MFDGSFRTNFEKVMSPIGATLSRIGVSPDLVTGLGVVMAAGCAVATGTGNFRVAFLLLVLTGLPDAIDGAV 213
            MFDGSFR N +KV  PIG +L R+GVSPD++T +GV MA  CAVA  TGNF  A +LL LTGLPDA+DGAV
Sbjct:    1 MFDGSFRENVDKVTGPIGESLHRVGVSPDVITVVGVSMAGACAVAIATGNFFTAAVLLALTGLPDALDGAV 71
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BLAST of mRNA_M-pyrifera_M_contig89532.20754.1 vs. uniprot
Match: UPI001E47F2CA (CDP-alcohol phosphatidyltransferase family protein n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E47F2CA)

HSP 1 Score: 87.0 bits (214), Expect = 1.960e-19
Identity = 44/71 (61.97%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 MFDGSFRTNFEKVMSPIGATLSRIGVSPDLVTGLGVVMAAGCAVATGTGNFRVAFLLLVLTGLPDAIDGAV 213
            M DG +RT+ EK + P+G  L R G+S D +T LG+VMAAG AVA  TGN  V  LLLVLTGLPDA+DGAV
Sbjct:    1 MLDGHWRTSIEKGLRPVGRNLRRTGISADHLTALGMVMAAGAAVAIATGNLHVGLLLLVLTGLPDALDGAV 71
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BLAST of mRNA_M-pyrifera_M_contig89532.20754.1 vs. uniprot
Match: A0A3D5K304_9ACTN (CDP-alcohol phosphatidyltransferase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D5K304_9ACTN)

HSP 1 Score: 84.7 bits (208), Expect = 1.490e-18
Identity = 39/71 (54.93%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    1 MFDGSFRTNFEKVMSPIGATLSRIGVSPDLVTGLGVVMAAGCAVATGTGNFRVAFLLLVLTGLPDAIDGAV 213
            M DG++RT  ++ ++PIG +L R G+S D+VT +G++MA+G +VA G GN R+ F+LLVLTG+PDA+DGAV
Sbjct:    1 MLDGNWRTVVDRGLTPIGQSLQRAGISADVVTVIGILMASGASVAIGMGNLRLGFMLLVLTGVPDALDGAV 71
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BLAST of mRNA_M-pyrifera_M_contig89532.20754.1 vs. uniprot
Match: A0A6G0AAW3_9ACTN (CDP-alcohol phosphatidyltransferase family protein n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0AAW3_9ACTN)

HSP 1 Score: 84.3 bits (207), Expect = 2.300e-18
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 MFDGSFRTNFEKVMSPIGATLSRIGVSPDLVTGLGVVMAAGCAVATGTGNFRVAFLLLVLTGLPDAIDGAV 213
            MFDG +R+N EK + P+GA + R G+  D +T LGVV A G AVA G G  RV  LLL+LTGLPD IDGAV
Sbjct:    1 MFDGRWRSNIEKGLKPLGAKIRRTGLKADHITALGVVFAVGAAVAIGAGALRVGLLLLILTGLPDLIDGAV 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig89532.20754.1 vs. uniprot
Match: A0A6B1EDR5_9ACTN (CDP-alcohol phosphatidyltransferase family protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EDR5_9ACTN)

HSP 1 Score: 84.3 bits (207), Expect = 2.470e-18
Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 MFDGSFRTNFEKVMSPIGATLSRIGVSPDLVTGLGVVMAAGCAVATGTGNFRVAFLLLVLTGLPDAIDGAV 213
            MFDG++R   ++ ++PIG +L R GV+ D+VT  G+VMA G AVA  TG+ R+ FLLLVLTG+PDA+DGAV
Sbjct:    1 MFDGNWREAVDRGLTPIGVSLRRTGVTADMVTITGIVMATGAAVAIATGHLRLGFLLLVLTGIPDALDGAV 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig89532.20754.1 vs. uniprot
Match: A0A6N7FGE5_9ACTN (CDP-alcohol phosphatidyltransferase family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FGE5_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 4.310e-18
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 MFDGSFRTNFEKVMSPIGATLSRIGVSPDLVTGLGVVMAAGCAVATGTGNFRVAFLLLVLTGLPDAIDGAV 213
            MFDG +R   ++ M PIGA + R GVS D +T  G+ M+A CAVA G G FRVA +LL+LTG+PDA+DGAV
Sbjct:    1 MFDGHWRKPVDQAMVPIGAAIRRAGVSADAITITGIAMSALCAVAIGAGQFRVALVLLILTGVPDALDGAV 71
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BLAST of mRNA_M-pyrifera_M_contig89532.20754.1 vs. uniprot
Match: A0A7K2E7E1_9ACTN (CDP-alcohol phosphatidyltransferase family protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2E7E1_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 5.060e-18
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 MFDGSFRTNFEKVMSPIGATLSRIGVSPDLVTGLGVVMAAGCAVATGTGNFRVAFLLLVLTGLPDAIDGAV 213
            MFDG++R   ++ ++PIG +L R GV+ D+VT  G+VMA+G AVA  TG+ RV FLLL+L G+PDA+DGAV
Sbjct:    1 MFDGNWREAVDRGLTPIGVSLRRTGVTADMVTITGIVMASGAAVAIATGHLRVGFLLLILAGIPDALDGAV 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig89532.20754.1 vs. uniprot
Match: A0A7Y2GLF5_9ACTN (CDP-alcohol phosphatidyltransferase family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GLF5_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 6.980e-18
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:    1 MFDGSFRTNFEKVMSPIGATLSRIGVSPDLVTGLGVVMAAGCAVATGTGNFRVAFLLLVLTGLPDAIDGAV 213
            MFDG++RT  ++ ++PIGA+L R G+S D VT +G+ MA   AVA G+GN R+  L L+LTG+PDA+DGAV
Sbjct:    1 MFDGNWRTAVDRGLTPIGASLQRTGISADQVTVVGIAMATAAAVAIGSGNLRLGLLFLILTGVPDALDGAV 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig89532.20754.1 vs. uniprot
Match: A0A6I3FAN3_9ACTN (CDP-alcohol phosphatidyltransferase family protein n=2 Tax=root TaxID=1 RepID=A0A6I3FAN3_9ACTN)

HSP 1 Score: 82.0 bits (201), Expect = 1.710e-17
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 MFDGSFRTNFEKVMSPIGATLSRIGVSPDLVTGLGVVMAAGCAVATGTGNFRVAFLLLVLTGLPDAIDGAV 213
            M DG +RTN EK + P+GA L R+G + D +T +GVVM+A  AVA  TG+  +  LLLVLTGLPDA+DGAV
Sbjct:    3 MLDGRWRTNIEKGLKPVGARLLRVGFTADRLTAIGVVMSAFAAVAIATGHLSLGLLLLVLTGLPDALDGAV 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig89532.20754.1 vs. uniprot
Match: A0A6I3C8W1_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A6I3C8W1_9ACTN)

HSP 1 Score: 81.6 bits (200), Expect = 3.050e-17
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    1 MFDGSFRTNFEKVMSPIGATLSRIGVSPDLVTGLGVVMAAGCAVATGTGNFRVAFLLLVLTGLPDAIDGAV 213
            MFDG +R+  +K ++PIG +L   GV+ D VT LG+VMA G A+A G G+ R+  LLL+LTG+PDA+DGAV
Sbjct:    1 MFDGHWRSTVDKGLTPIGQSLRNAGVTADTVTVLGIVMAGGAAMAIGAGSLRLGLLLLILTGIPDALDGAV 71
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89532.20754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2N8M0_9ACTN2.330e-2266.20CDP-alcohol phosphatidyltransferase family protein... [more]
UPI001E47F2CA1.960e-1961.97CDP-alcohol phosphatidyltransferase family protein... [more]
A0A3D5K304_9ACTN1.490e-1854.93CDP-alcohol phosphatidyltransferase n=1 Tax=Acidim... [more]
A0A6G0AAW3_9ACTN2.300e-1859.15CDP-alcohol phosphatidyltransferase family protein... [more]
A0A6B1EDR5_9ACTN2.470e-1857.75CDP-alcohol phosphatidyltransferase family protein... [more]
A0A6N7FGE5_9ACTN4.310e-1857.75CDP-alcohol phosphatidyltransferase family protein... [more]
A0A7K2E7E1_9ACTN5.060e-1856.34CDP-alcohol phosphatidyltransferase family protein... [more]
A0A7Y2GLF5_9ACTN6.980e-1854.93CDP-alcohol phosphatidyltransferase family protein... [more]
A0A6I3FAN3_9ACTN1.710e-1757.75CDP-alcohol phosphatidyltransferase family protein... [more]
A0A6I3C8W1_9ACTN3.050e-1754.93Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89532contigM-pyrifera_M_contig89532:2..214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.3
Seed ortholog evalue8.1e-10
Seed eggNOG ortholog1121877.JQKF01000002_gene1645
Preferred namepgsA1
KEGG rclassRC00002,RC00017,RC00078,RC02795
KEGG koko:K00995,ko:K00999
KEGG ReactionR01801,R01802
KEGG Pathwayko00562,ko00564,ko01100,ko04070,map00562,map00564,map01100,map04070
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003881,GO:0003882,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0030312,GO:0040007,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0071944,GO:0090407,GO:1901576
EggNOG free text desc.CDP-alcohol phosphatidyltransferase
EggNOG OGs2GYKW@201174,4CN1P@84992,COG0558@1,COG0558@2
EC2.7.8.11,2.7.8.5
COG Functional cat.I
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size213
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816805.8622453-CDS-M-pyrifera_M_contig89532:1..2141622816805.8622453-CDS-M-pyrifera_M_contig89532:1..214Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89532 2..214 -
1692278189.269086-CDS-M-pyrifera_M_contig89532:1..2141692278189.269086-CDS-M-pyrifera_M_contig89532:1..214Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89532 2..214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89532.20754.1prot_M-pyrifera_M_contig89532.20754.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89532 2..214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89532.20754.1

>prot_M-pyrifera_M_contig89532.20754.1 ID=prot_M-pyrifera_M_contig89532.20754.1|Name=mRNA_M-pyrifera_M_contig89532.20754.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
MFDGSFRTNFEKVMSPIGATLSRIGVSPDLVTGLGVVMAAGCAVATGTGN
FRVAFLLLVLTGLPDAIDGAV
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mRNA from alignment at M-pyrifera_M_contig89532:2..214-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89532.20754.1 ID=mRNA_M-pyrifera_M_contig89532.20754.1|Name=mRNA_M-pyrifera_M_contig89532.20754.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig89532:2..214- (Macrocystis pyrifera P11B4 male)
ATGTTCGACGGTTCCTTTCGTACCAACTTCGAGAAGGTCATGTCGCCGAT
CGGTGCAACGCTGAGTCGCATCGGTGTGTCGCCCGATCTCGTGACCGGCC
TCGGTGTGGTCATGGCCGCAGGCTGTGCGGTCGCCACGGGTACCGGCAAC
TTCCGTGTCGCCTTCCTCCTGCTCGTACTCACCGGCCTGCCCGACGCCAT
CGACGGCGCCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89532:2..214-

>mRNA_M-pyrifera_M_contig89532.20754.1 ID=mRNA_M-pyrifera_M_contig89532.20754.1|Name=mRNA_M-pyrifera_M_contig89532.20754.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig89532:2..214- (Macrocystis pyrifera P11B4 male)
ATGTTCGACGGTTCCTTTCGTACCAACTTCGAGAAGGTCATGTCGCCGAT
CGGTGCAACGCTGAGTCGCATCGGTGTGTCGCCCGATCTCGTGACCGGCC
TCGGTGTGGTCATGGCCGCAGGCTGTGCGGTCGCCACGGGTACCGGCAAC
TTCCGTGTCGCCTTCCTCCTGCTCGTACTCACCGGCCTGCCCGACGCCAT
CGACGGCGCCGTGATGTTCGACGGTTCCTTTCGTACCAACTTCGAGAAGG
TCATGTCGCCGATCGGTGCAACGCTGAGTCGCATCGGTGTGTCGCCCGAT
CTCGTGACCGGCCTCGGTGTGGTCATGGCCGCAGGCTGTGCGGTCGCCAC
GGGTACCGGCAACTTCCGTGTCGCCTTCCTCCTGCTCGTACTCACCGGCC
TGCCCGACGCCATCGACGGCGCCGTG
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