mRNA_M-pyrifera_M_contig89508.20752.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89508.20752.1
Unique NamemRNA_M-pyrifera_M_contig89508.20752.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89508.20752.1 vs. uniprot
Match: A0A6H5JI21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI21_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.180e-30
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 1
Query:    1 AYDAVPFFPDVDLSIRVLGFWFVWLFTVPSLRARKPGEAEKVALNIAFLATPVVSFAMPFVTK 189
            A D VPFFP VD+SI+VLGFWFVWLFTVPSLRARKPG +EKVAL+IAFLATPVVSFAMPFVTK
Sbjct:  205 ASDQVPFFPHVDISIQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFVTK 267          
BLAST of mRNA_M-pyrifera_M_contig89508.20752.1 vs. uniprot
Match: D8LL49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL49_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 5.120e-30
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 1
Query:    1 AYDAVPFFPDVDLSIRVLGFWFVWLFTVPSLRARKPGEAEKVALNIAFLATPVVSFAMPFVTK 189
            A D VPFFP VD+SI+VLGFWFVWLFTVPSLRARKPG +EKVAL+IAFLATPVVSFAMPF+TK
Sbjct:  201 ASDQVPFFPHVDISIQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFITK 263          
BLAST of mRNA_M-pyrifera_M_contig89508.20752.1 vs. uniprot
Match: A0A7S2FEW9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FEW9_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 5.770e-25
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1
Query:    1 AYDAVPFFPDVDLSIRVLGFWFVWLFTVPSLRARKPGE------AEKVALNIAFLATPVVSFAMPFVTK 189
            AYDA+PFFP +DLS+RVLGFW +WLFT+PSLR+RKPG       AEK AL+I+FL TPVV+ AMP VTK
Sbjct:   13 AYDAMPFFPHLDLSVRVLGFWGIWLFTIPSLRSRKPGGVWGMNGAEKKALDISFLLTPVVNLAMPIVTK 81          
BLAST of mRNA_M-pyrifera_M_contig89508.20752.1 vs. uniprot
Match: A0A7S2UZ01_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ01_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.960e-23
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 1
Query:    4 YDAVPFFPDVDLSIRVLGFWFVWLFTVPSLRARKPGEAEKVALNIAFLATPVVSFAMPFVTK 189
            YDAVPF   +DLS+RVLGFW +WLFTVPSLRARKP   EK ALNIAF ATP+ + A+PF TK
Sbjct:  172 YDAVPFVDHLDLSVRVLGFWVIWLFTVPSLRARKPAADEKTALNIAFGATPLTNLALPFFTK 233          
BLAST of mRNA_M-pyrifera_M_contig89508.20752.1 vs. uniprot
Match: A0A835YV04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV04_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.580e-21
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    4 YDAVPFFPDVDLSIRVLGFWFVWLFTVPSLRARKP-GEAEKVALNIAFLATPVVSFAMPFVTK 189
            YD VP F  VDLSIRVLGFW +WLF +PSLRARKP   AEK ALNIAF+A+P+VS A+P +TK
Sbjct:  162 YDRVPGFEHVDLSIRVLGFWVIWLFAIPSLRARKPTNPAEKTALNIAFVASPLVSLALPAITK 224          
BLAST of mRNA_M-pyrifera_M_contig89508.20752.1 vs. uniprot
Match: A0A6S9FX91_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FX91_HETAK)

HSP 1 Score: 92.8 bits (229), Expect = 2.330e-21
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 AYDAVPFFPDVDLSIRVLGFWFVWLFTVPSLRARKPGEAEKVALNIAFLATPVVSFAMPFVTK 189
            +Y  VPF  DVD+S+RVLGFWF+WLFT+PSLRARKP   EK ALN AF  TP+ +   PFVTK
Sbjct:  163 SYGIVPFVEDVDISVRVLGFWFIWLFTIPSLRARKPAAGEKEALNWAFGLTPLTNLLAPFVTK 225          
BLAST of mRNA_M-pyrifera_M_contig89508.20752.1 vs. uniprot
Match: A0A7S2FLN3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FLN3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.110e-20
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    1 AYDAVPFFPDVDLSIRVLGFWFVWLFTVPSLRARKPG------EAEKVALNIAFLATPVVSFAMPFVTK 189
            +YDA+PF P++DL++RVLGFW +WLFT+PSLR+RKPG       AEK AL+IAFL TP+ +   PF TK
Sbjct:  167 SYDALPFLPNLDLAVRVLGFWGIWLFTIPSLRSRKPGGVWGMSNAEKNALDIAFLVTPLANLLAPFATK 235          
BLAST of mRNA_M-pyrifera_M_contig89508.20752.1 vs. uniprot
Match: W7TZ94_9STRA (Resistance to phytophthora 1 protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ94_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.310e-19
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 AYDAVPFFPDVDLSIRVLGFWFVWLFTVPSLRARKPGEAEKVALNIAFLATPVVSFAMPFVTK 189
            AYDA+P F  + L IR   FW  W+FT+PSLRAR+PG  EK AL++AFL TPVVS  MPF+T+
Sbjct:  168 AYDALPGFEHLPLPIRAFAFWSFWMFTIPSLRARRPGAVEKKALDVAFLLTPVVSLGMPFLTQ 230          
BLAST of mRNA_M-pyrifera_M_contig89508.20752.1 vs. uniprot
Match: M2VTY8_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTY8_GALSU)

HSP 1 Score: 84.7 bits (208), Expect = 9.060e-19
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 AYDAVPFFPDVDLSIRVLGFWFVWLFTVPSLRARKPGEAEKVALNIAFLATPVVSFAMPFVTK 189
            A +  PF  +V L  R LGFW VWLFT+PSLRARKP  AEK ALN+AFLA PV +  +PFV K
Sbjct:  106 AANKFPFVQEVPLVFRALGFWMVWLFTIPSLRARKPNMAEKNALNVAFLACPVANVVIPFVNK 168          
BLAST of mRNA_M-pyrifera_M_contig89508.20752.1 vs. uniprot
Match: A0A7S2TND9_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TND9_9EUKA)

HSP 1 Score: 85.1 bits (209), Expect = 3.110e-18
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   16 PFFPDVDLSIRVLGFWFVWLFTVPSLRARKPGEAEKVALNIAFLATPVVSFAMPFVTK 189
            P +PD+ ++ + LGFW +WLFT+PSLRARKP E EK ALN+AFLATP+++ A+P V K
Sbjct:  187 PGYPDLPIAAQALGFWTIWLFTIPSLRARKPAEVEKQALNVAFLATPLLNLAIPSVAK 244          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89508.20752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI21_9PHAE3.180e-3087.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL49_ECTSI5.120e-3085.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2FEW9_9STRA5.770e-2568.12Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2UZ01_9STRA4.960e-2370.97Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YV04_9STRA1.580e-2169.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9FX91_HETAK2.330e-2165.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2FLN3_9STRA1.110e-2059.42Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7TZ94_9STRA4.310e-1960.32Resistance to phytophthora 1 protein n=3 Tax=Monod... [more]
M2VTY8_GALSU9.060e-1961.90Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A7S2TND9_9EUKA3.110e-1860.34Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89508contigM-pyrifera_M_contig89508:506..694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue3.9e-24
Seed eggNOG ortholog2880.D8LL49
Hectar predicted targeting categorysignal peptide
EggNOG OGs2BZA5@1,2QSK6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816805.6346943-CDS-M-pyrifera_M_contig89508:505..6941622816805.6346943-CDS-M-pyrifera_M_contig89508:505..694Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89508 506..694 -
1692278189.1588736-CDS-M-pyrifera_M_contig89508:505..6941692278189.1588736-CDS-M-pyrifera_M_contig89508:505..694Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89508 506..694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89508.20752.1prot_M-pyrifera_M_contig89508.20752.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89508 506..694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89508.20752.1

>prot_M-pyrifera_M_contig89508.20752.1 ID=prot_M-pyrifera_M_contig89508.20752.1|Name=mRNA_M-pyrifera_M_contig89508.20752.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
AYDAVPFFPDVDLSIRVLGFWFVWLFTVPSLRARKPGEAEKVALNIAFLA
TPVVSFAMPFVTK
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mRNA from alignment at M-pyrifera_M_contig89508:506..694-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89508.20752.1 ID=mRNA_M-pyrifera_M_contig89508.20752.1|Name=mRNA_M-pyrifera_M_contig89508.20752.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig89508:506..694- (Macrocystis pyrifera P11B4 male)
GCGTACGACGCCGTTCCATTCTTCCCTGACGTGGATCTCTCAATCCGAGT CCTGGGCTTCTGGTTCGTCTGGCTTTTCACGGTGCCCTCTCTTCGGGCAA GGAAGCCGGGGGAGGCGGAGAAAGTGGCGCTGAACATCGCCTTTCTCGCC ACCCCCGTGGTCAGCTTCGCCATGCCCTTCGTCACCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89508:506..694-

>mRNA_M-pyrifera_M_contig89508.20752.1 ID=mRNA_M-pyrifera_M_contig89508.20752.1|Name=mRNA_M-pyrifera_M_contig89508.20752.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig89508:506..694- (Macrocystis pyrifera P11B4 male)
GCGTACGACGCCGTTCCATTCTTCCCTGACGTGGATCTCTCAATCCGAGT
CCTGGGCTTCTGGTTCGTCTGGCTTTTCACGGTGCCCTCTCTTCGGGCAA
GGAAGCCGGGGGAGGCGGAGAAAGTGGCGCTGAACATCGCCTTTCTCGCC
ACCCCCGTGGTCAGCTTCGCCATGCCCTTCGTCACCAAGGCGTACGACGC
CGTTCCATTCTTCCCTGACGTGGATCTCTCAATCCGAGTCCTGGGCTTCT
GGTTCGTCTGGCTTTTCACGGTGCCCTCTCTTCGGGCAAGGAAGCCGGGG
GAGGCGGAGAAAGTGGCGCTGAACATCGCCTTTCTCGCCACCCCCGTGGT
CAGCTTCGCCATGCCCTTCGTCACCAAG
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