mRNA_M-pyrifera_M_contig8948.20743.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8948.20743.1
Unique NamemRNA_M-pyrifera_M_contig8948.20743.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8948.20743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8948contigM-pyrifera_M_contig8948:9694..10695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816805.1378016-CDS-M-pyrifera_M_contig8948:9693..99791622816805.1378016-CDS-M-pyrifera_M_contig8948:9693..9979Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8948 9694..9979 -
1692278188.8782928-CDS-M-pyrifera_M_contig8948:9693..99791692278188.8782928-CDS-M-pyrifera_M_contig8948:9693..9979Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8948 9694..9979 -
1622816805.151951-CDS-M-pyrifera_M_contig8948:10525..106951622816805.151951-CDS-M-pyrifera_M_contig8948:10525..10695Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8948 10526..10695 -
1692278188.8904-CDS-M-pyrifera_M_contig8948:10525..106951692278188.8904-CDS-M-pyrifera_M_contig8948:10525..10695Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8948 10526..10695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8948.20743.1prot_M-pyrifera_M_contig8948.20743.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8948 9694..10695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8948.20743.1

>prot_M-pyrifera_M_contig8948.20743.1 ID=prot_M-pyrifera_M_contig8948.20743.1|Name=mRNA_M-pyrifera_M_contig8948.20743.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
SCDGNGSGSGGGGGRRGMNGKAGSRRPGSGKGGGGGGGGGGRRKGEGTPS
CASPVAPGGGGGGGGSVSSSSSSGKKAEHRNRTAGSVGNGAGGGPGSGGG
GGSGGGSSASGIVSGSSINGKGRGGAGASHSPWKGDGVSAANGGGAGAKA
GA
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mRNA from alignment at M-pyrifera_M_contig8948:9694..10695-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8948.20743.1 ID=mRNA_M-pyrifera_M_contig8948.20743.1|Name=mRNA_M-pyrifera_M_contig8948.20743.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig8948:9694..10695- (Macrocystis pyrifera P11B4 male)
AGTTGCGATGGAAATGGAAGTGGTAGCGGCGGCGGTGGTGGTCGTCGTGG
GATGAACGGTAAGGCCGGCTCTAGGCGACCCGGGTCGGGTAAAGGAGGAG
GCGGAGGAGGAGGAGGAGGAGGGCGGCGAAAGGGGGAAGGGACGCCTTCT
TGCGCTTCTCCGGTAGCTCCGTCCTCACCGCGACGACCCGCCGGGACAAC
GCTTGCTAATGGGGGGAGGCCGTCGCCGCTTGTGCCTCGGAACCAGCAGC
AGCCGCAGCAGTCGTCGCAGACTGCGCGGTCGCCGATAGAGCGCTGCAGC
AGCAGCGGCGGGATGGGTGGGGGTGAAGGGAATGGGATGGGCAAGGCAGC
GAGGACAACAGCAGCAGCAGCAGCGGCGGCAGCGGCGGCAGCAGCGAGCA
TAGCAGCAGCAGCAGTAGCAACGGCAGCAGGTACAGGCGGTGTTGGCGGC
AGCGGCGGCGGCAGCAGCAGCAGCAGCAACAATGTTAACAGCAGCGGAGG
TGGGAAAGGGAAAGGCCAGCGTCGCGCGAGAACGACAGCAGATAAAGCCG
CGGTAGCGGCTGCAGCCGCGCCGGCTGGCGCTGGGGCATCGAATGTTTCA
AGAGTCGGCGGGGGGGGGGAGGGGGGCGAGAGCAAGCCCCTCGCGGGGGG
GGGAACGAAGTCGGCCGCTGCTACCGCTGCCACAGCTGCTTCAGTTGTTG
CTTCGTCGGCCGGCAGCGGCGGCGGCGGCGGTGGTGGTGGTAGCGTTAGC
AGCAGCAGCAGTAGCGGCAAGAAAGCTGAACACCGAAATAGGACCGCCGG
AAGCGTCGGCAACGGCGCGGGGGGAGGTCCGGGCTCTGGCGGTGGTGGTG
GCAGCGGTGGGGGTAGCAGCGCCTCCGGGATCGTTTCCGGCTCCAGCATC
AACGGAAAAGGGCGAGGTGGCGCCGGTGCATCGCACTCGCCTTGGAAAGG
CGACGGTGTCTCCGCCGCCAACGGCGGCGGGGCGGGGGCGAAGGCGGGGG
CG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8948:9694..10695-

>mRNA_M-pyrifera_M_contig8948.20743.1 ID=mRNA_M-pyrifera_M_contig8948.20743.1|Name=mRNA_M-pyrifera_M_contig8948.20743.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig8948:9694..10695- (Macrocystis pyrifera P11B4 male)
AGTTGCGATGGAAATGGAAGTGGTAGCGGCGGCGGTGGTGGTCGTCGTGG
GATGAACGGTAAGGCCGGCTCTAGGCGACCCGGGTCGGGTAAAGGAGGAG
GCGGAGGAGGAGGAGGAGGAGGGCGGCGAAAGGGGGAAGGGACGCCTTCT
TGCGCTTCTCCGGTAGCTCCAGTTGCGATGGAAATGGAAGTGGTAGCGGC
GGCGGTGGTGGTCGTCGTGGGATGAACGGTAAGGCCGGCTCTAGGCGACC
CGGGTCGGGTAAAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGGCGGCGAA
AGGGGGAAGGGACGCCTTCTTGCGCTTCTCCGGTAGCTCCCGGCGGCGGC
GGCGGTGGTGGTGGTAGCGTTAGCAGCAGCAGCAGTAGCGGCAAGAAAGC
TGAACACCGAAATAGGACCGCCGGAAGCGTCGGCAACGGCGCGGGGGGAG
GTCCGGGCTCTGGCGGTGGTGGTGGCAGCGGTGGGGGTAGCAGCGCCTCC
GGGATCGTTTCCGGCTCCAGCATCAACGGAAAAGGGCGAGGTGGCGCCGG
TGCATCGCACTCGCCTTGGAAAGGCGACGGTGTCTCCGCCGCCAACGGCG
GCGGGGCGGGGGCGAAGGCGGGGGCGCGGCGGCGGCGGCGGTGGTGGTGG
TAGCGTTAGCAGCAGCAGCAGTAGCGGCAAGAAAGCTGAACACCGAAATA
GGACCGCCGGAAGCGTCGGCAACGGCGCGGGGGGAGGTCCGGGCTCTGGC
GGTGGTGGTGGCAGCGGTGGGGGTAGCAGCGCCTCCGGGATCGTTTCCGG
CTCCAGCATCAACGGAAAAGGGCGAGGTGGCGCCGGTGCATCGCACTCGC
CTTGGAAAGGCGACGGTGTCTCCGCCGCCAACGGCGGCGGGGCGGGGGCG
AAGGCGGGGGCG
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