mRNA_M-pyrifera_M_contig109937.2074.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109937.2074.1
Unique NamemRNA_M-pyrifera_M_contig109937.2074.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109937.2074.1 vs. uniprot
Match: A0A7S4IG92_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IG92_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 1.530e-16
Identity = 59/142 (41.55%), Postives = 76/142 (53.52%), Query Frame = 1 
Query:   16 LGQRVKALAAGVRAADAQMSAGADMAEAGTKFRNRSVETSQHFLSSGREESIQCQYEQAMPPPQLSLLDPFVEGSCLKKYTNKDFFLETWVEEQQKKYEEAKLKRAEKKKSRARKPSSATSHRRVVKQVELSRAKYSAMGAE 441
            LG RV+ L   +   + +      +   G  + N++ E +  FL   R  SI  Q+E+ MPPP L+LLDP+   SCLKKYTN  FFLE+WVEEQ + Y+EAK                 T  +  VK VEL R KYSAMG E
Sbjct:    3 LGDRVQTLYDNLPTVEEETPQKQQLTNLGISYSNKAPEDACQFLPEHRVPSIIHQHEECMPPPNLALLDPYANESCLKKYTNPMFFLESWVEEQNRMYQEAKKXXXXXXXXXXXXXXXXT--KIAVKSVELRRNKYSAMGQE 142
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BLAST of mRNA_M-pyrifera_M_contig109937.2074.1 vs. uniprot
Match: SCAR_DICDI (Protein SCAR n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=SCAR_DICDI)

HSP 1 Score: 67.0 bits (162), Expect = 3.610e-10
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:  106 KFRNRSVETSQHFLSSGREESIQCQYEQAMPPPQLSLLDPFVEGS--CLKKYTNKDFFLETWVEEQQKKYEEAKLKRAEKKKSRARK 360
            +F   + E +QHF  +    SI   YE+  PPP L LLDP+++     LK YTN DFF++ WV EQQK +EEA+ ++ E++++R +K
Sbjct:  104 EFHADNSERNQHFTHASIPASINTVYEKCKPPPNLQLLDPYMDDGQKSLKLYTNPDFFMDEWVAEQQKLHEEARQRKRERREARLKK 190
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BLAST of mRNA_M-pyrifera_M_contig109937.2074.1 vs. uniprot
Match: A0A7S4U6G2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4U6G2_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 1.590e-8
Identity = 40/103 (38.83%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:  106 KFRNRSVETSQHFLSSGREESIQCQYEQAMPPPQLSLLDPFV-EGS-CLKKYTNKDFFLETWVEEQQKKYEEAKLKRAEKKKSRARKPSSATSHRRVVKQVEL 408
            KFR    E +Q   S+ R  + +  Y +A PPP L +LD +  EG  CLK+YT  ++F+ETW++E +++YEEA+ ++ E+K++R     + T  +R  KQ EL
Sbjct:  121 KFRLELKEENQFLTSNSRAPATRDVYGEANPPPSLEILDEYCPEGEKCLKRYTYPEYFIETWLKEMEREYEEARRQKEERKRARM----ARTVSQRENKQQEL 219
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BLAST of mRNA_M-pyrifera_M_contig109937.2074.1 vs. uniprot
Match: A0A2P6N834_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N834_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 1.310e-5
Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:  109 FRNRSVETSQHFLSSGREESIQCQYEQAMPPPQLSLLDPFVEGS--CLKKYTNKDFFLETWVEEQQKKYEEAKLKRAEKKKSRARKPSSATSHRRVVKQVELSRAKY 423
            F + + E +Q F    R  SI   Y +A  PP  S ++P++E +   LK Y+N +FFLE W+EEQ +  E  K  RA+KK ++A+K  +  +   VV+  ++   +Y
Sbjct:  106 FASATNEGAQLFTKDNRTNSINQTYGRAEKPPSFSRVNPYMENNMDALKLYSNPEFFLEQWIEEQMRIREANKKLRAQKKAAKAKKAQTEDTKSGVVQVAKMVVVRY 212
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BLAST of mRNA_M-pyrifera_M_contig109937.2074.1 vs. uniprot
Match: L8HH50_ACACA (WH2 motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HH50_ACACA)

HSP 1 Score: 53.1 bits (126), Expect = 2.400e-5
Identity = 28/74 (37.84%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:  124 VETSQHFLSSGREESIQCQYEQAMPPPQLSLLDPFVEG--SCLKKYTNKDFFLETWVEEQQKKYEEAKLKRAEK 339
            ++++Q    + R+ ++   YE  +PPP  + LDP+ E    C+K+YTN DFF++ W+E QQK+  E  ++R EK
Sbjct:  110 LQSAQLVTRTSRDVALNAVYEYCLPPPNFAPLDPYSEDLVPCIKRYTNPDFFIDEWLE-QQKREREKIMERREK 182
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109937.2074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S4IG92_9EUKA1.530e-1641.55Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
SCAR_DICDI3.610e-1042.53Protein SCAR n=1 Tax=Dictyostelium discoideum TaxI... [more]
A0A7S4U6G2_9EUKA1.590e-838.83Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A2P6N834_9EUKA1.310e-534.58Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
L8HH50_ACACA2.400e-537.84WH2 motif domain containing protein n=1 Tax=Acanth... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109937contigM-pyrifera_M_contig109937:1..441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue2.8e-09
Seed eggNOG ortholog44689.DDB0191148
Preferred nameWASF1
KEGG koko:K05748,ko:K05753,ko:K06083,ko:K06220
KEGG Pathwayko04520,ko04666,ko04810,ko05100,ko05131,ko05132,ko05231,map04520,map04666,map04810,map05100,map05131,map05132,map05231
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000281,GO:0000768,GO:0000902,GO:0000904,GO:0000910,GO:0001501,GO:0001525,GO:0001568,GO:0001654,GO:0001667,GO:0001726,GO:0001745,GO:0001764,GO:0001944,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002520,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005769,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006810,GO:0006887,GO:0006897,GO:0006898,GO:0006907,GO:0006909,GO:0006928,GO:0006935,GO:0006949,GO:0006996,GO:0007010,GO:0007015,GO:0007017,GO:0007030,GO:0007034,GO:0007041,GO:0007049,GO:0007051,GO:0007052,GO:0007097,GO:0007154,GO:0007155,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007186,GO:0007187,GO:0007188,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007300,GO:0007338,GO:0007399,GO:0007409,GO:0007411,GO:0007413,GO:0007417,GO:0007423,GO:0007520,GO:0008037,GO:0008038,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008335,GO:0008360,GO:0008361,GO:0009566,GO:0009605,GO:0009653,GO:0009719,GO:0009887,GO:0009966,GO:0009967,GO:0009987,GO:0010001,GO:0010033,GO:0010256,GO:0010591,GO:0010592,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0012505,GO:0014003,GO:0014902,GO:0015629,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016477,GO:0016601,GO:0017124,GO:0019867,GO:0019904,GO:0019953,GO:0021782,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0022610,GO:0023051,GO:0023052,GO:0023056,GO:0030027,GO:0030029,GO:0030030,GO:0030031,GO:0030032,GO:0030036,GO:0030037,GO:0030041,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030175,GO:0030182,GO:0030219,GO:0030587,GO:0030832,GO:0030833,GO:0030838,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031143,GO:0031175,GO:0031209,GO:0031252,GO:0031268,GO:0031269,GO:0031288,GO:0031334,GO:0031344,GO:0031346,GO:0031410,GO:0031532,GO:0031589,GO:0031641,GO:0031643,GO:0031644,GO:0031646,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0032060,GO:0032153,GO:0032154,GO:0032155,GO:0032231,GO:0032232,GO:0032271,GO:0032273,GO:0032433,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032940,GO:0032956,GO:0032970,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033627,GO:0034237,GO:0034314,GO:0034315,GO:0034622,GO:0035046,GO:0035239,GO:0035295,GO:0035556,GO:0035855,GO:0038093,GO:0038094,GO:0038096,GO:0040007,GO:0040011,GO:0042063,GO:0042221,GO:0042330,GO:0042692,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043327,GO:0043933,GO:0044057,GO:0044085,GO:0044087,GO:0044089,GO:0044351,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044877,GO:0045010,GO:0045120,GO:0045177,GO:0045178,GO:0046903,GO:0046907,GO:0048010,GO:0048468,GO:0048477,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048588,GO:0048589,GO:0048592,GO:0048609,GO:0048646,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048709,GO:0048731,GO:0048749,GO:0048812,GO:0048846,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051018,GO:0051094,GO:0051125,GO:0051127,GO:0051128,GO:0051129,GO:0051130,GO:0051146,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051258,GO:0051301,GO:0051386,GO:0051388,GO:0051489,GO:0051491,GO:0051492,GO:0051493,GO:0051494,GO:0051495,GO:0051497,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0060187,GO:0060305,GO:0060348,GO:0060491,GO:0060560,GO:0061061,GO:0061515,GO:0061564,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070685,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071840,GO:0071933,GO:0071944,GO:0072358,GO:0072359,GO:0072673,GO:0090066,GO:0090287,GO:0090527,GO:0090596,GO:0090702,GO:0097435,GO:0097484,GO:0097485,GO:0097581,GO:0097708,GO:0098588,GO:0098590,GO:0098657,GO:0098751,GO:0098805,GO:0098858,GO:0099120,GO:0099568,GO:0106030,GO:0110020,GO:0110053,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:1902284,GO:1902743,GO:1902745,GO:1902774,GO:1902850,GO:1902903,GO:1902904,GO:1902905,GO:1903047,GO:1990089,GO:1990090,GO:1990138,GO:1990416,GO:2000026,GO:2000601
EggNOG free text desc.lamellipodium morphogenesis
EggNOG OGs3XD6D@554915,KOG1830@1,KOG1830@2759
COG Functional cat.Z
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons1
Model size441
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.8305874-UTR-M-pyrifera_M_contig109937:0..91622815609.8305874-UTR-M-pyrifera_M_contig109937:0..9Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109937 1..9 +
1692277486.11407-UTR-M-pyrifera_M_contig109937:0..91692277486.11407-UTR-M-pyrifera_M_contig109937:0..9Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109937 1..9 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.8430967-CDS-M-pyrifera_M_contig109937:9..4411622815609.8430967-CDS-M-pyrifera_M_contig109937:9..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109937 10..441 +
1692277486.1281369-CDS-M-pyrifera_M_contig109937:9..4411692277486.1281369-CDS-M-pyrifera_M_contig109937:9..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109937 10..441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109937.2074.1prot_M-pyrifera_M_contig109937.2074.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109937 10..441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109937.2074.1

>prot_M-pyrifera_M_contig109937.2074.1 ID=prot_M-pyrifera_M_contig109937.2074.1|Name=mRNA_M-pyrifera_M_contig109937.2074.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
MQLGQRVKALAAGVRAADAQMSAGADMAEAGTKFRNRSVETSQHFLSSGR
EESIQCQYEQAMPPPQLSLLDPFVEGSCLKKYTNKDFFLETWVEEQQKKY
EEAKLKRAEKKKSRARKPSSATSHRRVVKQVELSRAKYSAMGAE
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mRNA from alignment at M-pyrifera_M_contig109937:1..441+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109937.2074.1 ID=mRNA_M-pyrifera_M_contig109937.2074.1|Name=mRNA_M-pyrifera_M_contig109937.2074.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig109937:1..441+ (Macrocystis pyrifera P11B4 male)
CAACGGGTGATGCAGCTGGGCCAGCGAGTGAAGGCGCTCGCTGCTGGAGT
AAGGGCTGCCGACGCACAGATGTCTGCAGGCGCAGACATGGCCGAGGCAG
GCACCAAGTTCCGGAACAGGAGCGTGGAGACGAGCCAGCACTTCCTCAGC
TCTGGTCGGGAGGAGAGCATTCAATGCCAGTACGAACAGGCGATGCCTCC
TCCCCAGCTCTCCCTCCTCGACCCCTTTGTGGAGGGAAGCTGCCTCAAGA
AGTACACCAACAAGGACTTCTTCCTCGAGACCTGGGTGGAGGAGCAGCAG
AAGAAATACGAGGAGGCCAAGCTGAAGAGGGCGGAGAAGAAGAAGAGTCG
CGCTCGCAAGCCCTCCAGCGCCACCTCCCACCGCAGGGTCGTCAAGCAGG
TGGAGTTGAGCAGAGCAAAGTACTCTGCCATGGGTGCAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109937:1..441+

>mRNA_M-pyrifera_M_contig109937.2074.1 ID=mRNA_M-pyrifera_M_contig109937.2074.1|Name=mRNA_M-pyrifera_M_contig109937.2074.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig109937:1..441+ (Macrocystis pyrifera P11B4 male)
ATGCAGCTGGGCCAGCGAGTGAAGGCGCTCGCTGCTGGAGTAAGGGCTGC
CGACGCACAGATGTCTGCAGGCGCAGACATGGCCGAGGCAGGCACCAAGT
TCCGGAACAGGAGCGTGGAGACGAGCCAGCACTTCCTCAGCTCTGGTCGG
GAGGAGAGCATTCAATGCCAGTACGAACAGGCGATGCCTCCTCCCCAGCT
CTCCCTCCTCGACCCCTTTGTGGAGGGAAGCTGCCTCAAGAAGTACACCA
ACAAGGACTTCTTCCTCGAGACCTGGGTGGAGGAGCAGCAGAAGAAATAC
GAGGAGGCCAAGCTGAAGAGGGCGGAGAAGAAGAAGAGTCGCGCTCGCAA
GCCCTCCAGCGCCACCTCCCACCGCAGGGTCGTCAAGCAGGTGGAGTTGA
GCAGAGCAAAGTACTCTGCCATGGGTGCAGAGATGCAGCTGGGCCAGCGA
GTGAAGGCGCTCGCTGCTGGAGTAAGGGCTGCCGACGCACAGATGTCTGC
AGGCGCAGACATGGCCGAGGCAGGCACCAAGTTCCGGAACAGGAGCGTGG
AGACGAGCCAGCACTTCCTCAGCTCTGGTCGGGAGGAGAGCATTCAATGC
CAGTACGAACAGGCGATGCCTCCTCCCCAGCTCTCCCTCCTCGACCCCTT
TGTGGAGGGAAGCTGCCTCAAGAAGTACACCAACAAGGACTTCTTCCTCG
AGACCTGGGTGGAGGAGCAGCAGAAGAAATACGAGGAGGCCAAGCTGAAG
AGGGCGGAGAAGAAGAAGAGTCGCGCTCGCAAGCCCTCCAGCGCCACCTC
CCACCGCAGGGTCGTCAAGCAGGTGGAGTTGAGCAGAGCAAAGTACTCTG
CCATGGGTGCAGAG
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