mRNA_M-pyrifera_M_contig8947.20739.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8947.20739.1
Unique NamemRNA_M-pyrifera_M_contig8947.20739.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig8947.20739.1 vs. uniprot
Match: D7FP29_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP29_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 9.270e-105
Identity = 148/255 (58.04%), Postives = 187/255 (73.33%), Query Frame = 1 
Query:  169 LMMSGDSTVIQQFQLLSELVRLRHDFHAVTGLDADRRQNYELTFGGPKMTPGSVTFVFYRVFESCMLEIRNPHIKTAHALYFGCGMHLLHLIPTQSPALLKVALRSWTNYETLLTSRVEGYRKVNPDIKLVYMTTHTIQESKYLGPWLDALKGYAERDPAYLDACKRKFQEDLPERSPVRSNVEQACIDTVFGARGVELMNERGMAAMQDAGVAVVPAHGIVAGQAWATAFEDGRHYPQLVPLELFLFLNTVEGL 933
            ++ SGDST+ QQFQ+L E ++LR DF  V G      Q YE+TFG P+ TPGSVTF+   ++E C+L   NP++  A+A+YFGCGMHLLHL P Q  A +  A+ SW NY+TLL+ R+ G+R+VNPDIKLVYMTTHTI ESKY G W  AL+GY  RDP +L+ CK KF+E LP  SP+R ++EQ CIDTVFGA GV+L+NE+G+A M++ GV VVPAH +V GQ WAT   DGRH+P L PLELF   N +EGL
Sbjct:    1 MVFSGDSTIRQQFQVLGEFLKLRSDFQPVDG----NAQAYEMTFGAPRHTPGSVTFLLMPIYEKCLLVKGNPYVAQAYAMYFGCGMHLLHLFPVQESADVPRAMLSWENYDTLLSERIGGWREVNPDIKLVYMTTHTIDESKYYGEWKTALEGYKARDPVFLEPCKLKFEEILPSESPLRDDLEQVCIDTVFGAHGVQLLNEQGLAVMKEMGVPVVPAHMLVEGQQWATPDGDGRHFPYLTPLELFWLFNILEGL 251
[Close]
BLAST of mRNA_M-pyrifera_M_contig8947.20739.1 vs. uniprot
Match: D7G0U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U4_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.080e-22
Identity = 82/314 (26.11%), Postives = 131/314 (41.72%), Query Frame = 1 
Query:   64 WFDAWNATIQPKLDQLLVTSAGQKEG-------EWSAEKGLLLMMSGDSTVIQQFQLLSELVRLR---------HDFH----------AVTGLDADRRQNYELTFGGPKMTPGSVTFVFYRVFESCMLEIRNPHIKTAHALYFGCGMHLLHLIPTQSPALLKVALRSWTNYETLLTSRVEGYRKVN-PDIKLVYMTTHTIQESKYLGPWLDALKGYAERDPAYLDACKRKFQEDLPERSPVRSNVEQACIDTVFGARGVELMNERGMAAMQDAGVAVVPAHGIVAGQAWATAFEDGRHYPQLVPLELFLFLNTV 924
            WF  WN+  QP++D++   +  ++ G           ++   + M GDST++QQ  ++   +  R         H             A  G DA+      L  G      G     F   F+  +   +   + +  A+YFG G+HLL +   +         ++W  YE  L + VE YR       +LV+ T+HTIQ+S Y G + + +  Y + D   +  C+ + +            V+  C   +    G E++N R    M   GV  V    IV  Q WAT   DGRHY  LVP+E++ FL  +
Sbjct:  192 WFTRWNSMAQPRIDKVAALAEAERNGGDASXXXXXXTQQPFRVAMVGDSTMMQQHGVICAFLAERAGSLFDAAGHQDECCIDTLPREPAEEGGDANDHGTPALDLGNHTANGGGRGVCFRHSFQKFLEPPQWASLGSPDAVYFGRGLHLLPMDNMEGER-----AQAWLTYERDLENAVETYRAAGGAGFRLVFTTSHTIQDSVYQGLFREMVDAYRDGDMGVISKCEGQVRRGY--------GVDAYCRLGLMDRNGSEVLNRRSRPVMSRLGVPFVEGDLIVKDQEWATPKSDGRHYHMLVPVEVWEFLGVL 492
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8947.20739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP29_ECTSI9.270e-10558.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G0U4_ECTSI1.080e-2226.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8947contigM-pyrifera_M_contig8947:2266..5092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_002270.1
Exons5
Model size939
Cds size939
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8947.20739.1prot_M-pyrifera_M_contig8947.20739.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8947 2266..5092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.922356-CDS-M-pyrifera_M_contig8947:2265..25471622816804.922356-CDS-M-pyrifera_M_contig8947:2265..2547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8947 2266..2547 +
1692278188.7483974-CDS-M-pyrifera_M_contig8947:2265..25471692278188.7483974-CDS-M-pyrifera_M_contig8947:2265..2547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8947 2266..2547 +
1622816804.9368036-CDS-M-pyrifera_M_contig8947:3028..32311622816804.9368036-CDS-M-pyrifera_M_contig8947:3028..3231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8947 3029..3231 +
1692278188.7587354-CDS-M-pyrifera_M_contig8947:3028..32311692278188.7587354-CDS-M-pyrifera_M_contig8947:3028..3231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8947 3029..3231 +
1622816804.9483604-CDS-M-pyrifera_M_contig8947:3800..38521622816804.9483604-CDS-M-pyrifera_M_contig8947:3800..3852Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8947 3801..3852 +
1692278188.7677712-CDS-M-pyrifera_M_contig8947:3800..38521692278188.7677712-CDS-M-pyrifera_M_contig8947:3800..3852Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8947 3801..3852 +
1622816804.960924-CDS-M-pyrifera_M_contig8947:4270..44051622816804.960924-CDS-M-pyrifera_M_contig8947:4270..4405Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8947 4271..4405 +
1692278188.7769086-CDS-M-pyrifera_M_contig8947:4270..44051692278188.7769086-CDS-M-pyrifera_M_contig8947:4270..4405Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8947 4271..4405 +
1622816804.9716823-CDS-M-pyrifera_M_contig8947:4825..50921622816804.9716823-CDS-M-pyrifera_M_contig8947:4825..5092Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8947 4826..5092 +
1692278188.7857172-CDS-M-pyrifera_M_contig8947:4825..50921692278188.7857172-CDS-M-pyrifera_M_contig8947:4825..5092Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8947 4826..5092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8947.20739.1

>prot_M-pyrifera_M_contig8947.20739.1 ID=prot_M-pyrifera_M_contig8947.20739.1|Name=mRNA_M-pyrifera_M_contig8947.20739.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=313bp
KGCGGWQHCLETPRDSEVPLVWFDAWNATIQPKLDQLLVTSAGQKEGEWS
AEKGLLLMMSGDSTVIQQFQLLSELVRLRHDFHAVTGLDADRRQNYELTF
GGPKMTPGSVTFVFYRVFESCMLEIRNPHIKTAHALYFGCGMHLLHLIPT
QSPALLKVALRSWTNYETLLTSRVEGYRKVNPDIKLVYMTTHTIQESKYL
GPWLDALKGYAERDPAYLDACKRKFQEDLPERSPVRSNVEQACIDTVFGA
RGVELMNERGMAAMQDAGVAVVPAHGIVAGQAWATAFEDGRHYPQLVPLE
LFLFLNTVEGLP*
back to top

mRNA from alignment at M-pyrifera_M_contig8947:2266..5092+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8947.20739.1 ID=mRNA_M-pyrifera_M_contig8947.20739.1|Name=mRNA_M-pyrifera_M_contig8947.20739.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2827bp|location=Sequence derived from alignment at M-pyrifera_M_contig8947:2266..5092+ (Macrocystis pyrifera P11B4 male)
AAGGGCTGTGGGGGGTGGCAGCACTGCCTGGAAACACCCCGCGACAGTGA
GGTGCCTCTCGTATGGTTCGACGCCTGGAACGCCACCATTCAACCCAAGC
TGGACCAGCTGCTGGTTACGTCCGCCGGGCAGAAGGAGGGCGAGTGGTCT
GCGGAGAAAGGGCTGCTGCTGATGATGTCGGGAGATTCGACCGTCATCCA
GCAGTTTCAGCTCCTCTCCGAGCTTGTCCGTCTCCGGCACGACTTCCACG
CGGTCACAGGGCTCGACGCTGACAGACGACAGGTACAGTAGTAGTAGTCG
TAGTATTACTTGTACTACAGCAGCAGTAGTATCAGAGTAAGAACAGCAAG
AGGAGGACAAGTCGAAGTTGTAGCAGTCGTAGTCGTAGAAGTAGTAAATA
GTAGCGTAGTAGTTGAGCGACCGCTTCGCCTTCGCGCCGTGGCGCACATT
TTGTAGCTCCAATACGAGGTCCTTTTATTATCTACGCACACGAGCAATCA
TGATCGATTAATCCCCGTTCTCTCTCACCTACGTTTTCTTCTCGGCTGGG
CTCGGCTGTCTCAGTCGCTCACACACCAATCGATACAACTCCCTCTCTAC
CGTAATCGTACGTTTTCTGCATACTCTTGGCACACGAGAGCGAAATTTTG
AGCACACGACGGAATAATAATTGATTATCCTCCTTGTCTCTTGTCAATGT
TTTCTTCTCGGTTCGGTTCGGCTGTTGCGGTCGCGGGGGGCGGGGCGGGG
ACACGCACACCAGAACTACGAGCTGACCTTCGGCGGGCCGAAGATGACTC
CGGGGTCTGTCACGTTCGTGTTCTACCGCGTGTTCGAGTCGTGCATGCTG
GAGATCAGAAACCCGCACATCAAAACCGCTCACGCGCTGTACTTCGGATG
CGGCATGCACCTGCTGCACCTCATCCCCACGCAGTCGCCGGCGCTGCTGA
AAGTGGCTCTTCGAAGGTGGGTGGGTGGGTCGGTCCCCAACAAGGGGCTA
TGTTTCCTCGCAGCCGCGTGTGTCGCAAACCGTTGTCAAAAGTGCCGGAA
GCATCAACCCATGGATCAAGATTCAACAGGACTGACCGTGCATGTCTTAA
TAGTCGACATGTACAAATATGAAGAATGGGAGGCACTCAAGCCCCTTCGT
CGTCTGTCACGGTTGGCAGGGTCGTCGTAGTGTCCCTTGGTAAGGGACAT
GTCATCATCGGAGCGCTAGCGTGTGCGGTTCGAGATGTATCTATTGGTAG
TGCAACACGTACTAACGCTGCCTGCCCCGTACATATTTATGTTCCAGGTA
TCATACGTGCGTATGTAAAAATATAGCAGATGGGGCCTAAGCAGCTGCAA
CGCGTTGCAGAGGTTTCGCTCCCTCATTCAGCCTATTAATAGGGCAGCCT
TCATAAGTTTCACACTGACCTCCCGTGTTGTCGAGGGGTACTCACTCGTC
CCCTTCCTACCCCCCCCCGCCCCCTCCTTTTCGCCCGTTGGCCTCCCCCC
TCCCCCGACCCCCTCTCCCACTACCTCGGCGTCAGCTGGACAAACTACGA
AACCCTTTTAACGAGTCGAGTCGAAGGTTATCGCAAGGTGAGCGGCAAGC
GGCAGGAGCAGTCGGAAGAATCACTGTGTTTCAGGGGACGATACACATGG
TGCCCGGAGATTAGTGCACAGGAATACGCTGCGCAACAAGCTGTGCAATG
TAATACGCCCTATTCGGTTGTGCGCTCACACTTGGACTGAAGAGGCATTC
TTAGTTTGTTTTTATGCACTGGACGTGCGTCCCCAACGAGGTAACGGTAG
CGTAAGTGCAAGCAGTGCCTTCCAACCCTACTACTAGTATTGTAGTAATA
TTTTCAGATAACATGTAATCACCATCCGGAGCGACGCTTGTACATACTGA
CTTCGCCTCTCCCTTTCTCTCCCTCGGGTGACGTCAATATATATACCTGG
TGTATATATAACCTGGTACTGGTAATATATACAATATATATACTGATATT
GATAGGTTAACCCGGATATCAAGCTAGTGTACATGACGACGCACACCATC
CAAGAGAGCAAGTACTTGGGGCCGTGGCTGGACGCGCTCAAGGGGTACGC
GGAGCGTGACCCTGCCTACCTCGACGCCTGCAAGAGGAAGGTTGGTTTTG
GTGGTGTTGGTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGGTGGT
GGTGATTGTGGTGTTCCCGGTGATGGTCGTCGTGTTGGTAATGCTGATGT
TCTTGTTGGTGGTGGCGTTGGTGGTGTTAGTGTTTTTGGTGGCGGTGCTG
TTGGTGTTGTTGCTGATGTTTCTACAGTAGCAGTGTTCATATTTTTCTTC
TGTTGCTGCCGACAATACACTGACTGCAACAACCGCGCGCACGCGCATCG
CATCGCATCGCATCACACCGCACCGCGCCGCATCTCATGGCATGAGCGCC
CCGCCCCACCACCTCCCCAACGAACCCAGTACAACCCTCCATCACCATTG
CCCCCCCCTCACCCGCCTCCTACCCCGCGCTTCAAACGAACTGGACTCGG
AACCCGGCAGTTCCAGGAGGATCTCCCCGAGAGGTCTCCCGTGCGCAGCA
ACGTCGAGCAAGCTTGCATCGACACCGTCTTCGGGGCGAGGGGGGTAGAG
CTGATGAACGAGCGGGGCATGGCGGCGATGCAGGACGCGGGCGTGGCGGT
GGTGCCGGCGCACGGGATCGTGGCAGGGCAGGCGTGGGCGACGGCGTTTG
AAGACGGGCGACACTACCCCCAGCTTGTCCCGCTGGAGCTGTTCCTGTTC
CTGAACACCGTTGAGGGCCTTCCGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8947:2266..5092+

>mRNA_M-pyrifera_M_contig8947.20739.1 ID=mRNA_M-pyrifera_M_contig8947.20739.1|Name=mRNA_M-pyrifera_M_contig8947.20739.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1878bp|location=Sequence derived from alignment at M-pyrifera_M_contig8947:2266..5092+ (Macrocystis pyrifera P11B4 male)
AAGGGCTGTGGGGGGTGGCAGCACTGCCTGGAAACACCCCGCGACAGTGA
GGTGCCTCTCGTATGGTTCGACGCCTGGAACGCCACCATTCAACCCAAGC
TGGACCAGCTGCTGGTTACGTCCGCCGGGCAGAAGGAGGGCGAGTGGTCT
GCGGAGAAAGGGCTGCTGCTGATGATGTCGGGAGATTCGACCGTCATCCA
GCAGTTTCAGCTCCTCTCCGAGCTTGTCCGTCTCCGGCACGACTTCCACG
CGGTCACAGGGCTCGACGCTGACAGACGACAGAAGGGCTGTGGGGGGTGG
CAGCACTGCCTGGAAACACCCCGCGACAGTGAGGTGCCTCTCGTATGGTT
CGACGCCTGGAACGCCACCATTCAACCCAAGCTGGACCAGCTGCTGGTTA
CGTCCGCCGGGCAGAAGGAGGGCGAGTGGTCTGCGGAGAAAGGGCTGCTG
CTGATGATGTCGGGAGATTCGACCGTCATCCAGCAGTTTCAGCTCCTCTC
CGAGCTTGTCCGTCTCCGGCACGACTTCCACGCGGTCACAGGGCTCGACG
CTGACAGACGACAGAACTACGAGCTGACCTTCGGCGGGCCGAAGATGACT
CCGGGGTCTGTCACGTTCGTGTTCTACCGCGTGTTCGAGTCGTGCATGCT
GGAGATCAGAAACCCGCACATCAAAACCGCTCACGCGCTGTACTTCGGAT
GCGGCATGCACCTGCTGCACCTCATCCCCACGCAGTCGCCGGCGCTGCTG
AAAGTGGCTCTTCGAAGAACTACGAGCTGACCTTCGGCGGGCCGAAGATG
ACTCCGGGGTCTGTCACGTTCGTGTTCTACCGCGTGTTCGAGTCGTGCAT
GCTGGAGATCAGAAACCCGCACATCAAAACCGCTCACGCGCTGTACTTCG
GATGCGGCATGCACCTGCTGCACCTCATCCCCACGCAGTCGCCGGCGCTG
CTGAAAGTGGCTCTTCGAAGCTGGACAAACTACGAAACCCTTTTAACGAG
TCGAGTCGAAGGTTATCGCAAGCTGGACAAACTACGAAACCCTTTTAACG
AGTCGAGTCGAAGGTTATCGCAAGGTTAACCCGGATATCAAGCTAGTGTA
CATGACGACGCACACCATCCAAGAGAGCAAGTACTTGGGGCCGTGGCTGG
ACGCGCTCAAGGGGTACGCGGAGCGTGACCCTGCCTACCTCGACGCCTGC
AAGAGGAAGGTTAACCCGGATATCAAGCTAGTGTACATGACGACGCACAC
CATCCAAGAGAGCAAGTACTTGGGGCCGTGGCTGGACGCGCTCAAGGGGT
ACGCGGAGCGTGACCCTGCCTACCTCGACGCCTGCAAGAGGAAGTTCCAG
GAGGATCTCCCCGAGAGGTCTCCCGTGCGCAGCAACGTCGAGCAAGCTTG
CATCGACACCGTCTTCGGGGCGAGGGGGGTAGAGCTGATGAACGAGCGGG
GCATGGCGGCGATGCAGGACGCGGGCGTGGCGGTGGTGCCGGCGCACGGG
ATCGTGGCAGGGCAGGCGTGGGCGACGGCGTTTGAAGACGGGCGACACTA
CCCCCAGCTTGTCCCGCTGGAGCTGTTCCTGTTCCTGAACACCGTTGAGG
GCCTTCCGTGATTCCAGGAGGATCTCCCCGAGAGGTCTCCCGTGCGCAGC
AACGTCGAGCAAGCTTGCATCGACACCGTCTTCGGGGCGAGGGGGGTAGA
GCTGATGAACGAGCGGGGCATGGCGGCGATGCAGGACGCGGGCGTGGCGG
TGGTGCCGGCGCACGGGATCGTGGCAGGGCAGGCGTGGGCGACGGCGTTT
GAAGACGGGCGACACTACCCCCAGCTTGTCCCGCTGGAGCTGTTCCTGTT
CCTGAACACCGTTGAGGGCCTTCCGTGA
back to top