mRNA_M-pyrifera_M_contig89461.20735.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89461.20735.1
Unique NamemRNA_M-pyrifera_M_contig89461.20735.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89461.20735.1 vs. uniprot
Match: D3BK91_POLPP (Component of SCAR regulatory complex n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BK91_POLPP)

HSP 1 Score: 142 bits (359), Expect = 5.960e-37
Identity = 75/128 (58.59%), Postives = 96/128 (75.00%), Query Frame = 1 
Query:    4 ASEGLLWYMMKLLDLLALLDALLNMKACLVTDFAFYKRAFSFL-KPMETAEDQSL--HTMSLFLAQQNSITALLKSKVQDLSRYDDVLSLIVNLCATYVETEQYVLPGDKHGLLRVMPYALFVMDSTD 378
            ASE L+ Y++KLLDL ALLDAL NMKACL  DF+F+KRA  FL K M  AEDQ+   HT+ LFLA QNSIT  LK  + ++ ++DDVL +IVN CA Y++ ++Y+LP +KH LLRVMPY LF++D  D
Sbjct:  151 ASEALISYLIKLLDLFALLDALKNMKACLNNDFSFFKRASGFLRKQMSGAEDQTQENHTLYLFLAHQNSITTTLKQDLHNIEKFDDVLPIIVNQCADYLDNDKYILPSEKHCLLRVMPYVLFLIDEND 278
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BLAST of mRNA_M-pyrifera_M_contig89461.20735.1 vs. uniprot
Match: A0A8J4PMG3_9MYCE (DUF1394 domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PMG3_9MYCE)

HSP 1 Score: 139 bits (349), Expect = 1.330e-35
Identity = 73/128 (57.03%), Postives = 96/128 (75.00%), Query Frame = 1 
Query:    4 ASEGLLWYMMKLLDLLALLDALLNMKACLVTDFAFYKRAFSFL-KPMETAEDQSL--HTMSLFLAQQNSITALLKSKVQDLSRYDDVLSLIVNLCATYVETEQYVLPGDKHGLLRVMPYALFVMDSTD 378
            ASE  + Y++K+LDLLA+LDAL NMKACL  DF+F+KRA  FL K M   EDQ+   HT+ LFLA QNSIT  LK ++ ++ ++DDVL +IVN CA ++E E+YVLP +KH LLRVMP+ LF++D  D
Sbjct:  157 ASETFICYLVKILDLLAILDALKNMKACLNNDFSFFKRASGFLRKQMSGVEDQTQENHTLYLFLANQNSITTTLKQELHNIEKFDDVLPIIVNQCADFLEQEKYVLPSEKHCLLRVMPFLLFLIDEND 284
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BLAST of mRNA_M-pyrifera_M_contig89461.20735.1 vs. uniprot
Match: PIRA_DICDI (Protein pirA n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=PIRA_DICDI)

HSP 1 Score: 138 bits (347), Expect = 2.470e-35
Identity = 71/128 (55.47%), Postives = 97/128 (75.78%), Query Frame = 1 
Query:    4 ASEGLLWYMMKLLDLLALLDALLNMKACLVTDFAFYKRAFSFL-KPMETAEDQSL--HTMSLFLAQQNSITALLKSKVQDLSRYDDVLSLIVNLCATYVETEQYVLPGDKHGLLRVMPYALFVMDSTD 378
            ASE  + Y++++LDLLA+LDAL NMKACL  DF+F+KRA  FL K M   EDQ+   HT+ LFLA QNSIT+ LK ++ ++ ++DD+L +IVN CA Y+E E+Y+LP +KH LLRVMP+ LF++D  D
Sbjct:  157 ASESFINYLVRILDLLAILDALKNMKACLNNDFSFFKRATGFLRKQMSGTEDQTQENHTLYLFLANQNSITSSLKLELHNIDKFDDILPMIVNQCADYLEQEKYILPSEKHCLLRVMPFVLFLIDEND 284
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BLAST of mRNA_M-pyrifera_M_contig89461.20735.1 vs. uniprot
Match: A0A151ZAX9_9MYCE (Component of SCAR regulatory complex n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZAX9_9MYCE)

HSP 1 Score: 134 bits (336), Expect = 7.490e-34
Identity = 67/122 (54.92%), Postives = 90/122 (73.77%), Query Frame = 1 
Query:    4 ASEGLLWYMMKLLDLLALLDALLNMKACLVTDFAFYKRAFSFLKPMETAEDQSLHTMSLFLAQQNSITALLKSKVQDLSRYDDVLSLIVNLCATYVETEQYVLPGDKHGLLRVMPYALFVMD 369
            ASE  L Y++++LDLLA+LDAL NMKACL  DFAF++RA S L+     + Q  H + LFLA QNSIT  LK+++  + R+DDVL +IVN CA Y+E E+Y+LP +KH LLRVMP+ L ++D
Sbjct:  156 ASESFLNYLVRILDLLAILDALKNMKACLNNDFAFFRRATSVLRKNSDDQSQEYHNLYLFLANQNSITNTLKNELSGIERFDDVLPIIVNQCADYLEQEKYILPSEKHCLLRVMPFILLLID 277
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BLAST of mRNA_M-pyrifera_M_contig89461.20735.1 vs. uniprot
Match: F4QDG7_CAVFA (Component of SCAR regulatory complex n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QDG7_CAVFA)

HSP 1 Score: 132 bits (333), Expect = 1.930e-33
Identity = 69/127 (54.33%), Postives = 95/127 (74.80%), Query Frame = 1 
Query:    7 SEGLLWYMMKLLDLLALLDALLNMKACLVTDFAFYKRAFSFL-KPMETAEDQSL--HTMSLFLAQQNSITALLKSKVQDLSRYDDVLSLIVNLCATYVETEQYVLPGDKHGLLRVMPYALFVMDSTD 378
            SE L+ Y++KLLDL ALLDAL N+KACL  DF+F+KRA  FL K M  AEDQ+   HT+ LFLA QNSIT  LK ++ ++ ++++VL ++VN CA ++E E+Y+LP +KH  LRVMPY L+++D  D
Sbjct:  154 SESLVTYLVKLLDLFALLDALKNVKACLNNDFSFFKRASGFLRKQMTGAEDQTQENHTLYLFLAHQNSITTSLKQELHNIDKFEEVLPVLVNQCADFMEKEKYILPSEKHCYLRVMPYVLYLIDEND 280
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BLAST of mRNA_M-pyrifera_M_contig89461.20735.1 vs. uniprot
Match: F0ZFF2_DICPU (Rac-binding component of scar regulatory complex n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZFF2_DICPU)

HSP 1 Score: 125 bits (315), Expect = 5.070e-31
Identity = 69/128 (53.91%), Postives = 95/128 (74.22%), Query Frame = 1 
Query:    4 ASEGLLWYMMKLLDLLALLDALLNMKACLVTDFAFYKRAFSFL-KPMETAEDQSL--HTMSLFLAQQNSITALLKSKVQDLSRYDDVLSLIVNLCATYVETEQYVLPGDKHGLLRVMPYALFVMDSTD 378
            ASE  + Y++++LDLLA+LDAL NMKACL  DF+F+KRA  FL K M   EDQ+   HT+ LFLA QNSIT+ LK ++ ++   ++VL  IVN CA Y+E ++++LP +KH LLRVMP+ALF++D  D
Sbjct:  158 ASESFINYLIRILDLLAILDALKNMKACLNNDFSFFKRATGFLRKQMSGTEDQTQENHTLYLFLANQNSITSSLKLELHNIG--NEVLPTIVNQCADYLEQDKFILPSEKHCLLRVMPFALFLIDEND 283
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BLAST of mRNA_M-pyrifera_M_contig89461.20735.1 vs. uniprot
Match: A0A2P6MP60_9EUKA (Component of SCAR regulatory complex (Fragment) n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MP60_9EUKA)

HSP 1 Score: 122 bits (306), Expect = 6.750e-30
Identity = 67/129 (51.94%), Postives = 86/129 (66.67%), Query Frame = 1 
Query:    1 FASEGLLWYMMKLLDLLALLDALLNMKACLVTDFAFYKRAFSFL-KPMETAEDQSL--HTMSLFLAQQNSITALLKSKVQDLSRYDDVLSLIVNLCATYVETEQYVLPGDKHGLLRVMPYALFVMDSTD 378
            F S+  LWYM++L+D  ALLD L NMKACL  DF+FYKRA  FL K M   +DQ+   H + LFLA Q+SIT  LK+ +  +  +DD +S +VN      ET+ Y+LP DKH LLRVMPY L +MD T+
Sbjct:  152 FPSQLYLWYMIQLVDRFALLDDLKNMKACLNNDFSFYKRAHQFLRKGMSGGDDQNAENHELYLFLANQSSITTNLKAALHVIPNFDDAMSEVVNCAVKMFETDMYLLPADKHTLLRVMPYGLLLMDGTE 280
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BLAST of mRNA_M-pyrifera_M_contig89461.20735.1 vs. uniprot
Match: UPI000644A63A (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A63A)

HSP 1 Score: 122 bits (305), Expect = 1.130e-29
Identity = 71/143 (49.65%), Postives = 93/143 (65.03%), Query Frame = 1 
Query:    7 SEGLLWYMMKLLDLLALLDALLNMKACLVTDFAFYKRAFSFL-KPMETAEDQSLHTMSL--FLAQQNSITALLKSKVQDLSRY----------------DDVLSLIVNLCATYVETEQYVLPGDKHGLLRVMPYALFVMDSTD 378
            SE L+ Y+++LLDL ALLDAL NMKACL  DF+F+KR+  FL K M  AEDQ+    +L  FLA QNSIT  LK ++ +  +                 D+VLS+IVN CA Y+E E+Y+LP +KH L+RVMPY LF++D  D
Sbjct:  152 SEALVSYLIRLLDLFALLDALKNMKACLNNDFSFFKRSSGFLRKQMTGAEDQTQENQTLYFFLAHQNSITTALKQELHNFEKLKQEPGNEKLXXXXXXIDEVLSVIVNQCADYLEKEKYILPTEKHCLMRVMPYVLFLIDEND 294
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BLAST of mRNA_M-pyrifera_M_contig89461.20735.1 vs. uniprot
Match: A0A6P8HAN4_ACTTE (Cytoplasmic FMR1-interacting protein n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HAN4_ACTTE)

HSP 1 Score: 107 bits (268), Expect = 1.090e-24
Identity = 58/128 (45.31%), Postives = 83/128 (64.84%), Query Frame = 1 
Query:    1 FASEGLLWYMMKLLDLLALLDALLNMKACLVTDFAFYKRAFSFLK--PMETAEDQSLHTMSLFLAQQNSITALLKSKVQDLSRYDDVLSLIVNLCATYVETEQYVLPGDKHGLLRVMPYALFVMDSTD 378
            F SE  L  + + +++  +LDAL NMKACL  D+A +KRA +FL+    + +  Q   T S FLA QN IT +LK K++ +  Y+DVL+ +VNLC    ET  Y+LP +KH LL+VM + +F+MDS D
Sbjct:  149 FISERYLLTLGRFINMFVVLDALKNMKACLNNDYALFKRADTFLRRGTGDVSLIQETQTFSFFLATQNKITLMLKEKLEKIQGYEDVLADVVNLCCKLYETSLYILPAEKHMLLKVMGFTMFLMDSKD 276
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BLAST of mRNA_M-pyrifera_M_contig89461.20735.1 vs. uniprot
Match: UPI00138FA419 (LOW QUALITY PROTEIN: cytoplasmic FMR1-interacting protein 2 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FA419)

HSP 1 Score: 107 bits (266), Expect = 2.040e-24
Identity = 59/128 (46.09%), Postives = 84/128 (65.62%), Query Frame = 1 
Query:    1 FASEGLLWYMMKLLDLLALLDALLNMKACLVTDFAFYKRAFSFLK--PMETAEDQSLHTMSLFLAQQNSITALLKSKVQDLSRYDDVLSLIVNLCATYVETEQYVLPGDKHGLLRVMPYALFVMDSTD 378
            F SE  L  + K +++  +LDAL NMKACL  D+AF+KRA +FL+    + +  Q    +SLFLA QN IT LLK  ++ +  Y+DVL+ IVNLC    ET  Y++P +KH LL+VM + +F+MDS +
Sbjct:  149 FISERYLLTLGKFINMFVVLDALKNMKACLNNDYAFFKRADTFLRRGTGDVSMIQESQNLSLFLANQNKITYLLKEGLEKIPGYEDVLADIVNLCCKLYETNTYIVPSEKHLLLKVMGFTIFLMDSKE 276
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89461.20735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D3BK91_POLPP5.960e-3758.59Component of SCAR regulatory complex n=1 Tax=Polys... [more]
A0A8J4PMG3_9MYCE1.330e-3557.03DUF1394 domain-containing protein n=1 Tax=Polyspho... [more]
PIRA_DICDI2.470e-3555.47Protein pirA n=1 Tax=Dictyostelium discoideum TaxI... [more]
A0A151ZAX9_9MYCE7.490e-3454.92Component of SCAR regulatory complex n=1 Tax=Tiegh... [more]
F4QDG7_CAVFA1.930e-3354.33Component of SCAR regulatory complex n=1 Tax=Caven... [more]
F0ZFF2_DICPU5.070e-3153.91Rac-binding component of scar regulatory complex n... [more]
A0A2P6MP60_9EUKA6.750e-3051.94Component of SCAR regulatory complex (Fragment) n=... [more]
UPI000644A63A1.130e-2949.65hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A6P8HAN4_ACTTE1.090e-2445.31Cytoplasmic FMR1-interacting protein n=1 Tax=Actin... [more]
UPI00138FA4192.040e-2446.09LOW QUALITY PROTEIN: cytoplasmic FMR1-interacting ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89461contigM-pyrifera_M_contig89461:16..393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue4.9e-28
Seed eggNOG ortholog44689.DDB0216270
KEGG koko:K05749
KEGG Pathwayko03013,ko04810,map03013,map04810
Hectar predicted targeting categorysignal peptide
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005911,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008150,GO:0009653,GO:0009888,GO:0009987,GO:0010026,GO:0010090,GO:0010638,GO:0010639,GO:0016043,GO:0030029,GO:0030036,GO:0030054,GO:0030154,GO:0030175,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030838,GO:0031143,GO:0031209,GO:0031252,GO:0031334,GO:0032271,GO:0032273,GO:0032433,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0040011,GO:0042995,GO:0043242,GO:0043244,GO:0043254,GO:0044087,GO:0044089,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0045010,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051493,GO:0051494,GO:0051495,GO:0051674,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0090558,GO:0090626,GO:0097435,GO:0098858,GO:0110053,GO:0120025,GO:0120038,GO:1901879,GO:1901880,GO:1902903,GO:1902904,GO:1902905
EggNOG free text desc.Cytoplasmic Fragile-X interacting family
EggNOG OGs3XDZ1@554915,KOG3534@1,KOG3534@2759
COG Functional cat.Z
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons1
Model size378
Cds size351
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.7614548-CDS-M-pyrifera_M_contig89461:15..3661622816804.7614548-CDS-M-pyrifera_M_contig89461:15..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89461 16..366 -
1692278188.6625757-CDS-M-pyrifera_M_contig89461:15..3661692278188.6625757-CDS-M-pyrifera_M_contig89461:15..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89461 16..366 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.7751312-UTR-M-pyrifera_M_contig89461:366..3931622816804.7751312-UTR-M-pyrifera_M_contig89461:366..393Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89461 367..393 -
1692278188.674948-UTR-M-pyrifera_M_contig89461:366..3931692278188.674948-UTR-M-pyrifera_M_contig89461:366..393Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89461 367..393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89461.20735.1prot_M-pyrifera_M_contig89461.20735.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89461 16..366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89461.20735.1

>prot_M-pyrifera_M_contig89461.20735.1 ID=prot_M-pyrifera_M_contig89461.20735.1|Name=mRNA_M-pyrifera_M_contig89461.20735.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MMKLLDLLALLDALLNMKACLVTDFAFYKRAFSFLKPMETAEDQSLHTMS
LFLAQQNSITALLKSKVQDLSRYDDVLSLIVNLCATYVETEQYVLPGDKH
GLLRVMPYALFVMDSTD
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mRNA from alignment at M-pyrifera_M_contig89461:16..393-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89461.20735.1 ID=mRNA_M-pyrifera_M_contig89461.20735.1|Name=mRNA_M-pyrifera_M_contig89461.20735.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig89461:16..393- (Macrocystis pyrifera P11B4 male)
TTTGCTTCTGAAGGTCTGCTTTGGTACATGATGAAGCTCCTGGATCTGCT
GGCCCTTCTGGATGCCTTGCTCAACATGAAGGCCTGCCTGGTGACGGATT
TTGCGTTCTACAAGAGGGCCTTCTCCTTCCTGAAGCCCATGGAGACAGCA
GAAGACCAAAGCCTCCACACCATGAGCTTGTTCCTAGCCCAGCAAAACAG
CATCACTGCTCTCCTCAAGAGCAAGGTGCAGGACCTGAGCAGATACGACG
ATGTTCTCTCGCTCATCGTCAACCTCTGTGCGACCTACGTGGAGACTGAG
CAGTACGTGCTGCCTGGCGACAAGCACGGCCTCCTGAGGGTCATGCCTTA
CGCTCTCTTTGTGATGGACTCGACAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89461:16..393-

>mRNA_M-pyrifera_M_contig89461.20735.1 ID=mRNA_M-pyrifera_M_contig89461.20735.1|Name=mRNA_M-pyrifera_M_contig89461.20735.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig89461:16..393- (Macrocystis pyrifera P11B4 male)
ATGATGAAGCTCCTGGATCTGCTGGCCCTTCTGGATGCCTTGCTCAACAT
GAAGGCCTGCCTGGTGACGGATTTTGCGTTCTACAAGAGGGCCTTCTCCT
TCCTGAAGCCCATGGAGACAGCAGAAGACCAAAGCCTCCACACCATGAGC
TTGTTCCTAGCCCAGCAAAACAGCATCACTGCTCTCCTCAAGAGCAAGGT
GCAGGACCTGAGCAGATACGACGATGTTCTCTCGCTCATCGTCAACCTCT
GTGCGACCTACGTGGAGACTGAGCAGTACGTGCTGCCTGGCGACAAGCAC
GGCCTCCTGAGGGTCATGCCTTACGCTCTCTTTGTGATGGACTCGACAGA
CATGATGAAGCTCCTGGATCTGCTGGCCCTTCTGGATGCCTTGCTCAACA
TGAAGGCCTGCCTGGTGACGGATTTTGCGTTCTACAAGAGGGCCTTCTCC
TTCCTGAAGCCCATGGAGACAGCAGAAGACCAAAGCCTCCACACCATGAG
CTTGTTCCTAGCCCAGCAAAACAGCATCACTGCTCTCCTCAAGAGCAAGG
TGCAGGACCTGAGCAGATACGACGATGTTCTCTCGCTCATCGTCAACCTC
TGTGCGACCTACGTGGAGACTGAGCAGTACGTGCTGCCTGGCGACAAGCA
CGGCCTCCTGAGGGTCATGCCTTACGCTCTCTTTGTGATGGACTCGACAG
AC
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