mRNA_M-pyrifera_M_contig89419.20728.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89419.20728.1
Unique NamemRNA_M-pyrifera_M_contig89419.20728.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89419.20728.1 vs. uniprot
Match: A0A6G0WW39_9STRA (DNL-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW39_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.050e-26
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:   85 EKPASIPGATL--GDRFLMMFTCKKCNTRTAKLISKLSYEEGVVLARCPGCQNLHLIADHLGWFEDESYDVMKDAMRKGDQAR 327
            + PA +PGATL  G++F+M++TC  C+TR AK ISK +Y  GVVL RCP CQNLHL+AD LGWFED  YD+      KG+ AR
Sbjct:   48 DSPADVPGATLTKGEKFVMLYTCTVCDTRAAKTISKHAYYHGVVLIRCPTCQNLHLVADRLGWFEDGGYDIQTILAEKGENAR 130
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BLAST of mRNA_M-pyrifera_M_contig89419.20728.1 vs. uniprot
Match: A0A485LB80_9STRA (Aste57867_18627 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LB80_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.440e-25
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:   73 SSGDEKP-----ASIPGATL--GDRFLMMFTCKKCNTRTAKLISKLSYEEGVVLARCPGCQNLHLIADHLGWFEDESYDVMKDAMRKGDQAR 327
            SS D+ P     A++PGATL  G++F+M++TC  C+TR AK ISK +Y  GVVL RCP CQNLHLIAD LGWFED  YDV +    KG  AR
Sbjct:   53 SSSDDPPSAPDAAAVPGATLTSGEKFVMVYTCTVCDTRAAKTISKHAYYNGVVLIRCPTCQNLHLIADRLGWFEDGGYDVQEVIAAKGGNAR 144
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BLAST of mRNA_M-pyrifera_M_contig89419.20728.1 vs. uniprot
Match: A0A024TPC8_9STRA (DNL-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TPC8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.860e-25
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:  100 IPGATL--GDRFLMMFTCKKCNTRTAKLISKLSYEEGVVLARCPGCQNLHLIADHLGWFEDESYDVMKDAMRKGDQAR 327
            IPGATL  GD+F+M++TC  C+TR AK ISK +Y  GVVL RCP CQNLHLIAD LGWFED+ +DV +    KG  AR
Sbjct:   75 IPGATLTSGDKFVMVYTCTVCDTRAAKTISKHAYYNGVVLIRCPTCQNLHLIADRLGWFEDDGFDVQEVLAAKGGNAR 152
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BLAST of mRNA_M-pyrifera_M_contig89419.20728.1 vs. uniprot
Match: W4GQX1_9STRA (DNL-type domain-containing protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GQX1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.280e-25
Identity = 50/78 (64.10%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:  100 IPGATL--GDRFLMMFTCKKCNTRTAKLISKLSYEEGVVLARCPGCQNLHLIADHLGWFEDESYDVMKDAMRKGDQAR 327
            IPGATL  GD+F+M++TC  C+TR AK ISK +Y  GVVL RCP CQNLHLIAD LGWFED  YDV +    KG  AR
Sbjct:   81 IPGATLTSGDKFVMVYTCTVCDTRAAKTISKHAYYNGVVLIRCPTCQNLHLIADRLGWFEDGGYDVQEVLAAKGGNAR 158
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BLAST of mRNA_M-pyrifera_M_contig89419.20728.1 vs. uniprot
Match: T0R2W8_SAPDV (DNL-type domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R2W8_SAPDV)

HSP 1 Score: 98.2 bits (243), Expect = 9.320e-24
Identity = 47/78 (60.26%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:   97 SIPGA-TLGDRFLMMFTCKKCNTRTAKLISKLSYEEGVVLARCPGCQNLHLIADHLGWFEDESYDVMKDAMRKGDQAR 327
            S PG  + GD+F+M++TC  C+TR AK ISK +Y  GVVL RCP C+NLHLIAD LGWFED+SYDV      KG QA+
Sbjct:   52 SAPGMESEGDKFVMLYTCTVCDTRAAKTISKQAYYNGVVLVRCPKCENLHLIADRLGWFEDDSYDVEGVLKAKGSQAK 129
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BLAST of mRNA_M-pyrifera_M_contig89419.20728.1 vs. uniprot
Match: A0A5D6XS23_9STRA (DNL-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS23_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.010e-23
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:   94 ASIPGA-TLGDRFLMMFTCKKCNTRTAKLISKLSYEEGVVLARCPGCQNLHLIADHLGWFEDESYDVMKDAMRKGDQAR 327
            A +PG  + G++F+M++TC  C TR AK ISK +Y +GVVL RCPGCQ LHLIADHLGWF+DES  V      KG+  R
Sbjct:   27 ADVPGVESPGEKFVMLYTCVVCETRAAKTISKHAYSKGVVLVRCPGCQKLHLIADHLGWFDDESVTVESILAAKGESVR 105
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BLAST of mRNA_M-pyrifera_M_contig89419.20728.1 vs. uniprot
Match: A0A0P1A8C7_PLAHL (Zinc finger n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8C7_PLAHL)

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-23
Identity = 45/79 (56.96%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:   94 ASIPGA-TLGDRFLMMFTCKKCNTRTAKLISKLSYEEGVVLARCPGCQNLHLIADHLGWFEDESYDVMKDAMRKGDQAR 327
            +S+PG  + GD+F+M++TC  C TR+AK ISK +Y +GVVL RCPGC+NLHLIAD LGWFED++ DV     +KG + R
Sbjct:   69 SSVPGVESPGDKFVMVYTCSVCETRSAKTISKHAYYKGVVLVRCPGCENLHLIADRLGWFEDDATDVESLLKQKGKRVR 147
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BLAST of mRNA_M-pyrifera_M_contig89419.20728.1 vs. uniprot
Match: A0A1V9YGL5_9STRA (DNL-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGL5_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.680e-23
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:  118 GDRFLMMFTCKKCNTRTAKLISKLSYEEGVVLARCPGCQNLHLIADHLGWFEDESYDVMKDAMRKGDQAR 327
            GD+F+M++TC  C+TR AK ISK +Y  GVVL RCP C+NLHLIAD LGWFED+SYDV      KG QA+
Sbjct:   61 GDKFVMLYTCTVCDTRAAKTISKQAYYNGVVLVRCPKCENLHLIADRLGWFEDDSYDVEGVLKAKGGQAK 130
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BLAST of mRNA_M-pyrifera_M_contig89419.20728.1 vs. uniprot
Match: K3X3X9_GLOUD (DNL-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3X9_GLOUD)

HSP 1 Score: 97.1 bits (240), Expect = 1.780e-23
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:   85 EKPASIPGA-TLGDRFLMMFTCKKCNTRTAKLISKLSYEEGVVLARCPGCQNLHLIADHLGWFEDESYDVMKDAMRKGDQAR 327
            E  + +PG  + G++F+M++TC  C TR+AK ISK +Y +GVVL RCPGCQ LHLIAD LGWFEDES DV     +KG+  R
Sbjct:   45 ESFSDVPGVESPGEKFVMLYTCVVCETRSAKTISKHAYYKGVVLVRCPGCQKLHLIADRLGWFEDESTDVESILAQKGESVR 126
[Close]
BLAST of mRNA_M-pyrifera_M_contig89419.20728.1 vs. uniprot
Match: A0A1V9ZD03_9STRA (DNL-type domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZD03_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.150e-23
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:  118 GDRFLMMFTCKKCNTRTAKLISKLSYEEGVVLARCPGCQNLHLIADHLGWFEDESYDVMKDAMRKGDQAR 327
            G++F+M++TC  C+TR AK ISK +Y  GVVL RCP C+NLHLIAD LGWFED+SYDV +    KG QA+
Sbjct:   59 GEKFVMLYTCTVCDTRAAKTISKQAYYHGVVLVRCPKCENLHLIADRLGWFEDDSYDVEQILKAKGGQAK 128
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89419.20728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0WW39_9STRA1.050e-2657.83DNL-type domain-containing protein n=1 Tax=Aphanom... [more]
A0A485LB80_9STRA1.440e-2557.61Aste57867_18627 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TPC8_9STRA2.860e-2562.82DNL-type domain-containing protein n=1 Tax=Aphanom... [more]
W4GQX1_9STRA4.280e-2564.10DNL-type domain-containing protein n=9 Tax=Aphanom... [more]
T0R2W8_SAPDV9.320e-2460.26DNL-type domain-containing protein n=1 Tax=Saprole... [more]
A0A5D6XS23_9STRA1.010e-2356.96DNL-type domain-containing protein (Fragment) n=1 ... [more]
A0A0P1A8C7_PLAHL1.500e-2356.96Zinc finger n=1 Tax=Plasmopara halstedii TaxID=478... [more]
A0A1V9YGL5_9STRA1.680e-2362.86DNL-type domain-containing protein n=1 Tax=Achlya ... [more]
K3X3X9_GLOUD1.780e-2356.10DNL-type domain-containing protein n=1 Tax=Globisp... [more]
A0A1V9ZD03_9STRA2.150e-2361.43DNL-type domain-containing protein n=1 Tax=Thraust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89419contigM-pyrifera_M_contig89419:213..706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue3.5e-20
Seed eggNOG ortholog42099.EPrPV00000016019
Preferred nameDNLZ
KEGG koko:K02953,ko:K12794,ko:K17808
KEGG Pathwayko03010,ko04621,ko05152,map03010,map04621,map05152
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0006457,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019866,GO:0030150,GO:0031090,GO:0031647,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035966,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0050821,GO:0050896,GO:0051082,GO:0051087,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0098796,GO:0098798,GO:0098800,GO:1990542
EggNOG free text desc.zinc finger protein. Source PGD
EggNOG OGs1MHM3@121069,KOG3277@1,KOG3277@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Exons2
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.443986-CDS-M-pyrifera_M_contig89419:212..3531622816804.443986-CDS-M-pyrifera_M_contig89419:212..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89419 213..353 -
1692278188.4935365-CDS-M-pyrifera_M_contig89419:212..3531692278188.4935365-CDS-M-pyrifera_M_contig89419:212..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89419 213..353 -
1622816804.455092-CDS-M-pyrifera_M_contig89419:520..7061622816804.455092-CDS-M-pyrifera_M_contig89419:520..706Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89419 521..706 -
1692278188.5120442-CDS-M-pyrifera_M_contig89419:520..7061692278188.5120442-CDS-M-pyrifera_M_contig89419:520..706Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89419 521..706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89419.20728.1prot_M-pyrifera_M_contig89419.20728.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89419 213..706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89419.20728.1

>prot_M-pyrifera_M_contig89419.20728.1 ID=prot_M-pyrifera_M_contig89419.20728.1|Name=mRNA_M-pyrifera_M_contig89419.20728.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
RSLSTAPSKTPTDGASSASSMEESSSGDEKPASIPGATLGDRFLMMFTCK
KCNTRTAKLISKLSYEEGVVLARCPGCQNLHLIADHLGWFEDESYDVMKD
AMRKGDQAR
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mRNA from alignment at M-pyrifera_M_contig89419:213..706-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89419.20728.1 ID=mRNA_M-pyrifera_M_contig89419.20728.1|Name=mRNA_M-pyrifera_M_contig89419.20728.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=494bp|location=Sequence derived from alignment at M-pyrifera_M_contig89419:213..706- (Macrocystis pyrifera P11B4 male)
AGATCGTTGTCCACGGCTCCATCGAAAACCCCAACAGATGGTGCATCCTC
TGCCTCAAGCATGGAGGAAAGCAGTAGTGGTGATGAGAAACCGGCTTCAA
TTCCAGGAGCAACTCTTGGGGACCGATTTCTCATGATGTTCACCTGCAAG
AAATGCAACACGAGGACTGCAAAGCTCATCAGCAAAGTAAGTGTGTGGGG
TAGAGGGGAATGGTGGGTATAGGGGGAAGGGGGGCTTGTGTTTTGGTGGG
GTAGAGGAGAGTTTTGTTGTTGATTGTAAATTTTTAGTCCTGAGGGTAGG
ATAGAGGGAGAATGAGGTGTAGGGGAGTACTATTGGAGGTTTGATTAATG
CAGTTGTCGTATGAGGAAGGTGTGGTATTAGCGAGGTGTCCTGGGTGTCA
GAATTTGCACCTGATTGCGGACCATCTGGGTTGGTTTGAGGATGAATCGT
ATGACGTCATGAAAGATGCCATGCGTAAAGGAGATCAAGCGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89419:213..706-

>mRNA_M-pyrifera_M_contig89419.20728.1 ID=mRNA_M-pyrifera_M_contig89419.20728.1|Name=mRNA_M-pyrifera_M_contig89419.20728.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig89419:213..706- (Macrocystis pyrifera P11B4 male)
AGATCGTTGTCCACGGCTCCATCGAAAACCCCAACAGATGGTGCATCCTC
TGCCTCAAGCATGGAGGAAAGCAGTAGTGGTGATGAGAAACCGGCTTCAA
TTCCAGGAGCAACTCTTGGGGACCGATTTCTCATGATGTTCACCTGCAAG
AAATGCAACACGAGGACTGCAAAGCTCATCAGCAAAAGATCGTTGTCCAC
GGCTCCATCGAAAACCCCAACAGATGGTGCATCCTCTGCCTCAAGCATGG
AGGAAAGCAGTAGTGGTGATGAGAAACCGGCTTCAATTCCAGGAGCAACT
CTTGGGGACCGATTTCTCATGATGTTCACCTGCAAGAAATGCAACACGAG
GACTGCAAAGCTCATCAGCAAATTGTCGTATGAGGAAGGTGTGGTATTAG
CGAGGTGTCCTGGGTGTCAGAATTTGCACCTGATTGCGGACCATCTGGGT
TGGTTTGAGGATGAATCGTATGACGTCATGAAAGATGCCATGCGTAAAGG
AGATCAAGCGAGGTTGTCGTATGAGGAAGGTGTGGTATTAGCGAGGTGTC
CTGGGTGTCAGAATTTGCACCTGATTGCGGACCATCTGGGTTGGTTTGAG
GATGAATCGTATGACGTCATGAAAGATGCCATGCGTAAAGGAGATCAAGC
GAGG
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