mRNA_M-pyrifera_M_contig8937.20712.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8937.20712.1
Unique NamemRNA_M-pyrifera_M_contig8937.20712.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig8937.20712.1 vs. uniprot
Match: D8LMY9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMY9_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.540e-20
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 FQVRQSLRAKFNMGTAPLQDCCSMYWCQFCFIMQTAKEVALKKGDDPVYLGEVSMN 168
            +QVRQSLRAK++MG APL D  S+Y+C  CFIMQ AKEVAL+KGD+PVY GEV MN
Sbjct:   78 YQVRQSLRAKYDMGFAPLPDFVSLYFCGCCFIMQNAKEVALQKGDEPVYFGEVGMN 133
[Close]
BLAST of mRNA_M-pyrifera_M_contig8937.20712.1 vs. uniprot
Match: A0A6U1MVS5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MVS5_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 5.270e-7
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    7 VRQSLRAKFNMGTAPLQDCCSMYWCQFCFIMQTAKEVALKKGDDPVYLGEVSMN 168
             RQ++R K+++G   + D  + Y+C  C + Q A+EVA KKG +PV+ G V  N
Sbjct:   67 TRQTIRTKYSLGYNEIMDFVAAYFCGCCVVNQMAREVAKKKGKEPVWFGSVKTN 120
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8937.20712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMY9_ECTSI2.540e-2071.43Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6U1MVS5_9STRA5.270e-740.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8937contigM-pyrifera_M_contig8937:111..278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionUncharacterised protein family Cys-rich
Ec32 orthologEc-02_004180.1
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816803.7199388-CDS-M-pyrifera_M_contig8937:110..2781622816803.7199388-CDS-M-pyrifera_M_contig8937:110..278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8937 111..278 +
1692278188.1137018-CDS-M-pyrifera_M_contig8937:110..2781692278188.1137018-CDS-M-pyrifera_M_contig8937:110..278Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8937 111..278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8937.20712.1prot_M-pyrifera_M_contig8937.20712.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8937 111..278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8937.20712.1

>prot_M-pyrifera_M_contig8937.20712.1 ID=prot_M-pyrifera_M_contig8937.20712.1|Name=mRNA_M-pyrifera_M_contig8937.20712.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
FQVRQSLRAKFNMGTAPLQDCCSMYWCQFCFIMQTAKEVALKKGDDPVYL
GEVSMN
back to top

mRNA from alignment at M-pyrifera_M_contig8937:111..278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8937.20712.1 ID=mRNA_M-pyrifera_M_contig8937.20712.1|Name=mRNA_M-pyrifera_M_contig8937.20712.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=168bp|location=Sequence derived from alignment at M-pyrifera_M_contig8937:111..278+ (Macrocystis pyrifera P11B4 male)
TTTCAGGTCCGTCAGTCGCTGCGCGCCAAGTTCAACATGGGCACCGCTCC
TCTCCAAGACTGCTGCTCCATGTACTGGTGCCAGTTCTGCTTTATCATGC
AGACGGCGAAAGAAGTGGCGCTCAAGAAGGGGGATGACCCGGTGTACTTG
GGCGAGGTCAGCATGAAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8937:111..278+

>mRNA_M-pyrifera_M_contig8937.20712.1 ID=mRNA_M-pyrifera_M_contig8937.20712.1|Name=mRNA_M-pyrifera_M_contig8937.20712.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig8937:111..278+ (Macrocystis pyrifera P11B4 male)
TTTCAGGTCCGTCAGTCGCTGCGCGCCAAGTTCAACATGGGCACCGCTCC
TCTCCAAGACTGCTGCTCCATGTACTGGTGCCAGTTCTGCTTTATCATGC
AGACGGCGAAAGAAGTGGCGCTCAAGAAGGGGGATGACCCGGTGTACTTG
GGCGAGGTCAGCATGAACTTTCAGGTCCGTCAGTCGCTGCGCGCCAAGTT
CAACATGGGCACCGCTCCTCTCCAAGACTGCTGCTCCATGTACTGGTGCC
AGTTCTGCTTTATCATGCAGACGGCGAAAGAAGTGGCGCTCAAGAAGGGG
GATGACCCGGTGTACTTGGGCGAGGTCAGCATGAAC
back to top