mRNA_M-pyrifera_M_contig89319.20697.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89319.20697.1
Unique NamemRNA_M-pyrifera_M_contig89319.20697.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89319.20697.1 vs. uniprot
Match: A0A7Z0D285_9MICO (AcrR family transcriptional regulator n=2 Tax=Spelaeicoccus albus TaxID=1280376 RepID=A0A7Z0D285_9MICO)

HSP 1 Score: 52.8 bits (125), Expect = 5.080e-6
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   40 QSQLAKIATEGFVRHGFHGLSMRICGDEANLSKSSLYHHIDSKLDLADIALNRANQNTSLMLDEFE 237
            Q+ + +IAT+ F R G+ G SM     E +LSKS++YHH+DSK +L   AL+ +    + M+D+ E
Sbjct:   20 QASVLRIATDVFNRRGYEGTSMDHLAKELHLSKSAIYHHVDSKEELLHHALSTSLDALTAMMDDVE 85
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BLAST of mRNA_M-pyrifera_M_contig89319.20697.1 vs. uniprot
Match: A0A1X3P928_9MICC (TetR family transcriptional regulator n=1 Tax=Nesterenkonia sp. PF2B19 TaxID=1881858 RepID=A0A1X3P928_9MICC)

HSP 1 Score: 51.6 bits (122), Expect = 1.400e-5
Identity = 25/63 (39.68%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:   49 LAKIATEGFVRHGFHGLSMRICGDEANLSKSSLYHHIDSKLDLADIALNRANQNTSLMLDEFE 237
            L  +  E F RHG+   SM     E  +SKS++YHH+ SK ++ DIALNR+      ++ E E
Sbjct:   23 LLTVCVEAFNRHGYEATSMGALSRELGISKSAIYHHVSSKEEILDIALNRSLAELERVVSEAE 85
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BLAST of mRNA_M-pyrifera_M_contig89319.20697.1 vs. uniprot
Match: A9WRW7_RENSM (Transcriptional regulator, TetR family n=1 Tax=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) TaxID=288705 RepID=A9WRW7_RENSM)

HSP 1 Score: 50.4 bits (119), Expect = 3.440e-5
Identity = 22/54 (40.74%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   40 QSQLAKIATEGFVRHGFHGLSMRICGDEANLSKSSLYHHIDSKLDLADIALNRA 201
            Q  + +IA E F +HG+   SM +  +   +SKS++YHH+DSK  L ++AL++A
Sbjct:   15 QETVLRIAVEAFNQHGYEATSMGLLAERLGVSKSAIYHHVDSKEALLELALDQA 68
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BLAST of mRNA_M-pyrifera_M_contig89319.20697.1 vs. uniprot
Match: A0A0W8IF91_9MICC (AcrR family transcriptional regulator n=10 Tax=Nesterenkonia TaxID=57494 RepID=A0A0W8IF91_9MICC)

HSP 1 Score: 50.4 bits (119), Expect = 3.760e-5
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   49 LAKIATEGFVRHGFHGLSMRICGDEANLSKSSLYHHIDSKLDLADIALNRA 201
            L  +  E F RHG+   SM     E  +SKS++YHH+ SK ++ DIALNR+
Sbjct:   23 LITVCVETFNRHGYEATSMGALSRELGISKSAIYHHVSSKEEILDIALNRS 73
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BLAST of mRNA_M-pyrifera_M_contig89319.20697.1 vs. uniprot
Match: A0A7Z0GMQ2_9MICC (AcrR family transcriptional regulator n=1 Tax=Nesterenkonia xinjiangensis TaxID=225327 RepID=A0A7Z0GMQ2_9MICC)

HSP 1 Score: 50.1 bits (118), Expect = 5.170e-5
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   49 LAKIATEGFVRHGFHGLSMRICGDEANLSKSSLYHHIDSKLDLADIALNRA 201
            L  +  E F RHG+   SM     E  +SKS++YHH+ SK ++ DIALNR+
Sbjct:   23 LLTVCVETFNRHGYDATSMGALSRELGISKSAIYHHVSSKEEILDIALNRS 73
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BLAST of mRNA_M-pyrifera_M_contig89319.20697.1 vs. uniprot
Match: A0A3N1ZUA8_9ACTN (TetR family transcriptional regulator n=2 Tax=Luteococcus japonicus TaxID=33984 RepID=A0A3N1ZUA8_9ACTN)

HSP 1 Score: 49.7 bits (117), Expect = 7.040e-5
Identity = 20/51 (39.22%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:   49 LAKIATEGFVRHGFHGLSMRICGDEANLSKSSLYHHIDSKLDLADIALNRA 201
            L ++    F++HG+H  S+ I  +   +SKS++YHH+DSK  L ++A+ RA
Sbjct:   22 LLEVCVAEFIKHGYHATSIGILAEALGVSKSAIYHHVDSKEQLLEMAVERA 72
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BLAST of mRNA_M-pyrifera_M_contig89319.20697.1 vs. uniprot
Match: A0A1B7LUF1_9MICC (TetR family transcriptional regulator n=2 Tax=Enteractinococcus TaxID=1164863 RepID=A0A1B7LUF1_9MICC)

HSP 1 Score: 49.7 bits (117), Expect = 7.040e-5
Identity = 28/91 (30.77%), Postives = 46/91 (50.55%), Query Frame = 1 
Query:   49 LAKIATEGFVRHGFHGLSMRICGDEANLSKSSLYHHIDSKLDLADIALNRANQNTSLMLDEFEE-NRDTDVLFEAVIGAHENVFNLLLPAI 318
            L  +  + F RHG+   SM +  DE  +SKS++YHH+ +K ++ + ALN A       ++E E+ +       EAVI     V     P++
Sbjct:   23 LVDLCVKVFNRHGYEATSMGMLADELGISKSAIYHHVKTKEEILESALNEALDGLEAAMEEAEQTDGSAQTQIEAVIAGAVQVLVEKQPSV 113
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89319.20697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7Z0D285_9MICO5.080e-640.91AcrR family transcriptional regulator n=2 Tax=Spel... [more]
A0A1X3P928_9MICC1.400e-539.68TetR family transcriptional regulator n=1 Tax=Nest... [more]
A9WRW7_RENSM3.440e-540.74Transcriptional regulator, TetR family n=1 Tax=Ren... [more]
A0A0W8IF91_9MICC3.760e-545.10AcrR family transcriptional regulator n=10 Tax=Nes... [more]
A0A7Z0GMQ2_9MICC5.170e-545.10AcrR family transcriptional regulator n=1 Tax=Nest... [more]
A0A3N1ZUA8_9ACTN7.040e-539.22TetR family transcriptional regulator n=2 Tax=Lute... [more]
A0A1B7LUF1_9MICC7.040e-530.77TetR family transcriptional regulator n=2 Tax=Ente... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89319contigM-pyrifera_M_contig89319:375..692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size318
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816803.010047-CDS-M-pyrifera_M_contig89319:374..6921622816803.010047-CDS-M-pyrifera_M_contig89319:374..692Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89319 375..692 -
1692278187.7687125-CDS-M-pyrifera_M_contig89319:374..6921692278187.7687125-CDS-M-pyrifera_M_contig89319:374..692Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89319 375..692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89319.20697.1prot_M-pyrifera_M_contig89319.20697.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89319 375..692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89319.20697.1

>prot_M-pyrifera_M_contig89319.20697.1 ID=prot_M-pyrifera_M_contig89319.20697.1|Name=mRNA_M-pyrifera_M_contig89319.20697.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MLRRRCAMSISQRQSQLAKIATEGFVRHGFHGLSMRICGDEANLSKSSLY
HHIDSKLDLADIALNRANQNTSLMLDEFEENRDTDVLFEAVIGAHENVFN
LLLPAI
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mRNA from alignment at M-pyrifera_M_contig89319:375..692-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89319.20697.1 ID=mRNA_M-pyrifera_M_contig89319.20697.1|Name=mRNA_M-pyrifera_M_contig89319.20697.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig89319:375..692- (Macrocystis pyrifera P11B4 male)
ATGCTACGGCGGAGGTGTGCAATGAGCATTAGTCAACGACAATCACAATT
GGCAAAAATTGCGACTGAGGGTTTCGTTCGTCATGGTTTTCACGGGCTTA
GCATGCGGATATGCGGTGATGAAGCTAACCTATCGAAAAGCTCCTTATAT
CACCATATTGATAGCAAGCTCGATTTGGCGGACATAGCGCTGAATAGGGC
AAATCAAAATACATCCCTCATGCTTGATGAATTTGAAGAAAACCGCGATA
CGGACGTGCTCTTTGAGGCAGTGATAGGCGCGCATGAAAATGTTTTTAAC
CTCTTGCTGCCAGCAATA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89319:375..692-

>mRNA_M-pyrifera_M_contig89319.20697.1 ID=mRNA_M-pyrifera_M_contig89319.20697.1|Name=mRNA_M-pyrifera_M_contig89319.20697.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig89319:375..692- (Macrocystis pyrifera P11B4 male)
ATGCTACGGCGGAGGTGTGCAATGAGCATTAGTCAACGACAATCACAATT
GGCAAAAATTGCGACTGAGGGTTTCGTTCGTCATGGTTTTCACGGGCTTA
GCATGCGGATATGCGGTGATGAAGCTAACCTATCGAAAAGCTCCTTATAT
CACCATATTGATAGCAAGCTCGATTTGGCGGACATAGCGCTGAATAGGGC
AAATCAAAATACATCCCTCATGCTTGATGAATTTGAAGAAAACCGCGATA
CGGACGTGCTCTTTGAGGCAGTGATAGGCGCGCATGAAAATGTTTTTAAC
CTCTTGCTGCCAGCAATAATGCTACGGCGGAGGTGTGCAATGAGCATTAG
TCAACGACAATCACAATTGGCAAAAATTGCGACTGAGGGTTTCGTTCGTC
ATGGTTTTCACGGGCTTAGCATGCGGATATGCGGTGATGAAGCTAACCTA
TCGAAAAGCTCCTTATATCACCATATTGATAGCAAGCTCGATTTGGCGGA
CATAGCGCTGAATAGGGCAAATCAAAATACATCCCTCATGCTTGATGAAT
TTGAAGAAAACCGCGATACGGACGTGCTCTTTGAGGCAGTGATAGGCGCG
CATGAAAATGTTTTTAACCTCTTGCTGCCAGCAATA
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