mRNA_M-pyrifera_M_contig89316.20696.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89316.20696.1
Unique NamemRNA_M-pyrifera_M_contig89316.20696.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89316.20696.1 vs. uniprot
Match: A0A7R9SMN4_9CRUS (Hypothetical protein n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9SMN4_9CRUS)

HSP 1 Score: 82.8 bits (203), Expect = 2.000e-16
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:    1 LRQYVPDSIATYLETADPTEFAQVFQGQSVSAAEVIWTPNMRNILLNAVGAHLAEFKQTLEANPYAMYSYQEMPPVEFPGVDQELRCGGYYIRNV 285
            L   +P ++  YL    P +FA++F G+     EVIW+  MR +L+  +  HLA+F   L +N  A+Y Y  +P ++FP ++ EL CGGYY++++
Sbjct: 1163 LTPMLPTAMICYLNNYGPVKFAEIFLGE-FDTPEVIWSSEMRRLLIQKIATHLADFTPKLSSNASALYQYCPIPSIQFPQLEDELFCGGYYLKHL 1256
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BLAST of mRNA_M-pyrifera_M_contig89316.20696.1 vs. uniprot
Match: E0VQI0_PEDHC (J domain-containing protein n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VQI0_PEDHC)

HSP 1 Score: 74.3 bits (181), Expect = 1.880e-13
Identity = 32/91 (35.16%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:   13 VPDSIATYLETADPTEFAQVFQGQSVSAAEVIWTPNMRNILLNAVGAHLAEFKQTLEANPYAMYSYQEMPPVEFPGVDQELRCGGYYIRNV 285
            +P+++ +YLE   P +FAQ+F G+     EVIW   MR +L+  +  H+A+F   L +N  A Y Y  +P + +P ++ EL C  +Y+R++
Sbjct:  466 LPEAMLSYLENHGPEKFAQIFLGE-FDTPEVIWNREMRQLLIQKLAMHVADFSPRLRSNTRAPYQYCTIPAIRYPQLENELFCNIFYLRHL 555
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BLAST of mRNA_M-pyrifera_M_contig89316.20696.1 vs. uniprot
Match: A0A1I8M3V4_MUSDO (J domain-containing protein n=9 Tax=Calyptratae TaxID=43742 RepID=A0A1I8M3V4_MUSDO)

HSP 1 Score: 73.6 bits (179), Expect = 3.530e-13
Identity = 32/95 (33.68%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:    1 LRQYVPDSIATYLETADPTEFAQVFQGQSVSAAEVIWTPNMRNILLNAVGAHLAEFKQTLEANPYAMYSYQEMPPVEFPGVDQELRCGGYYIRNV 285
            L Q +P+++  +LE     +FA++F G+     EVIW+  MR +L+  + AH+A+F   L  +  A Y Y  +P + +P ++ EL C  YY+R++
Sbjct: 1169 LGQLLPEAMVCFLENYSAEKFAEIFLGE-FDTPEVIWSSEMRRLLIEKIAAHIADFTPRLRGHTMARYPYLAIPAISYPQLENELFCHIYYLRHL 1262
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BLAST of mRNA_M-pyrifera_M_contig89316.20696.1 vs. uniprot
Match: A0A1B0G775_GLOMM (J domain-containing protein n=1 Tax=Glossina morsitans morsitans TaxID=37546 RepID=A0A1B0G775_GLOMM)

HSP 1 Score: 73.6 bits (179), Expect = 3.530e-13
Identity = 32/95 (33.68%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:    1 LRQYVPDSIATYLETADPTEFAQVFQGQSVSAAEVIWTPNMRNILLNAVGAHLAEFKQTLEANPYAMYSYQEMPPVEFPGVDQELRCGGYYIRNV 285
            L Q +P+++  +LE     +FA++F G+     EVIW+  MR +L+  + AH+A+F   L+ +  A Y Y  +P + +P ++ EL C  YY+R++
Sbjct: 1186 LGQLLPEAMVCFLENYSAEKFAEIFLGE-FDTPEVIWSSEMRRLLIEKIAAHIADFTPRLKGHTMARYPYLAIPVISYPQLENELFCHIYYLRHL 1279
[Close]
BLAST of mRNA_M-pyrifera_M_contig89316.20696.1 vs. uniprot
Match: A0A1A9ZGA3_GLOPL (J domain-containing protein n=1 Tax=Glossina pallidipes TaxID=7398 RepID=A0A1A9ZGA3_GLOPL)

HSP 1 Score: 73.6 bits (179), Expect = 3.530e-13
Identity = 32/95 (33.68%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:    1 LRQYVPDSIATYLETADPTEFAQVFQGQSVSAAEVIWTPNMRNILLNAVGAHLAEFKQTLEANPYAMYSYQEMPPVEFPGVDQELRCGGYYIRNV 285
            L Q +P+++  +LE     +FA++F G+     EVIW+  MR +L+  + AH+A+F   L+ +  A Y Y  +P + +P ++ EL C  YY+R++
Sbjct: 1186 LGQLLPEAMVCFLENYSAEKFAEIFLGE-FDTPEVIWSSEMRRLLIEKIAAHIADFTPRLKGHTMARYPYLAIPVISYPQLENELFCHIYYLRHL 1279
[Close]
BLAST of mRNA_M-pyrifera_M_contig89316.20696.1 vs. uniprot
Match: B4HSP1_DROSE (GM20621 n=1 Tax=Drosophila sechellia TaxID=7238 RepID=B4HSP1_DROSE)

HSP 1 Score: 73.2 bits (178), Expect = 4.780e-13
Identity = 32/95 (33.68%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:    1 LRQYVPDSIATYLETADPTEFAQVFQGQSVSAAEVIWTPNMRNILLNAVGAHLAEFKQTLEANPYAMYSYQEMPPVEFPGVDQELRCGGYYIRNV 285
            L Q +P+++  +LE     +FA++F G+     EVIW+  MR +L+  + AH+A+F   L  +  A Y Y  +P + +P ++ EL C  YY+R++
Sbjct: 1169 LGQLLPEAMVCFLENYSAEKFAEIFLGE-FDTPEVIWSSEMRRLLIEKIAAHIADFTPRLRGHTMARYPYLAIPVISYPQLENELFCHIYYLRHL 1262
[Close]
BLAST of mRNA_M-pyrifera_M_contig89316.20696.1 vs. uniprot
Match: A1Z7S0_DROME (Receptor mediated endocytosis 8, isoform A n=72 Tax=Drosophilinae TaxID=43845 RepID=A1Z7S0_DROME)

HSP 1 Score: 73.2 bits (178), Expect = 4.820e-13
Identity = 32/95 (33.68%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:    1 LRQYVPDSIATYLETADPTEFAQVFQGQSVSAAEVIWTPNMRNILLNAVGAHLAEFKQTLEANPYAMYSYQEMPPVEFPGVDQELRCGGYYIRNV 285
            L Q +P+++  +LE     +FA++F G+     EVIW+  MR +L+  + AH+A+F   L  +  A Y Y  +P + +P ++ EL C  YY+R++
Sbjct: 1169 LGQLLPEAMVCFLENYSAEKFAEIFLGE-FDTPEVIWSSEMRRLLIEKIAAHIADFTPRLRGHTMARYPYLAIPVISYPQLENELFCHIYYLRHL 1262
[Close]
BLAST of mRNA_M-pyrifera_M_contig89316.20696.1 vs. uniprot
Match: B4J9A0_DROGR (GH19867 n=11 Tax=Drosophila TaxID=7215 RepID=B4J9A0_DROGR)

HSP 1 Score: 73.2 bits (178), Expect = 4.820e-13
Identity = 32/95 (33.68%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:    1 LRQYVPDSIATYLETADPTEFAQVFQGQSVSAAEVIWTPNMRNILLNAVGAHLAEFKQTLEANPYAMYSYQEMPPVEFPGVDQELRCGGYYIRNV 285
            L Q +P+++  +LE     +FA++F G+     EVIW+  MR +L+  + AH+A+F   L  +  A Y Y  +P + +P ++ EL C  YY+R++
Sbjct: 1168 LGQLLPEAMVCFLENYSAEKFAEIFLGE-FDTPEVIWSSEMRRLLIEKIAAHIADFTPRLRGHTMARYPYLAIPVISYPQLENELFCHIYYLRHL 1261
[Close]
BLAST of mRNA_M-pyrifera_M_contig89316.20696.1 vs. uniprot
Match: A0A0Q9W0M5_DROVI (Uncharacterized protein, isoform B n=2 Tax=Drosophila virilis TaxID=7244 RepID=A0A0Q9W0M5_DROVI)

HSP 1 Score: 73.2 bits (178), Expect = 4.820e-13
Identity = 32/95 (33.68%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:    1 LRQYVPDSIATYLETADPTEFAQVFQGQSVSAAEVIWTPNMRNILLNAVGAHLAEFKQTLEANPYAMYSYQEMPPVEFPGVDQELRCGGYYIRNV 285
            L Q +P+++  +LE     +FA++F G+     EVIW+  MR +L+  + AH+A+F   L  +  A Y Y  +P + +P ++ EL C  YY+R++
Sbjct: 1169 LGQLLPEAMVCFLENYSAEKFAEIFLGE-FDTPEVIWSSEMRRLLIEKIAAHIADFTPRLRGHTMARYPYLAIPVISYPQLENELFCHIYYLRHL 1262
[Close]
BLAST of mRNA_M-pyrifera_M_contig89316.20696.1 vs. uniprot
Match: B4KQK7_DROMO (J domain-containing protein n=1 Tax=Drosophila mojavensis TaxID=7230 RepID=B4KQK7_DROMO)

HSP 1 Score: 73.2 bits (178), Expect = 4.820e-13
Identity = 32/95 (33.68%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:    1 LRQYVPDSIATYLETADPTEFAQVFQGQSVSAAEVIWTPNMRNILLNAVGAHLAEFKQTLEANPYAMYSYQEMPPVEFPGVDQELRCGGYYIRNV 285
            L Q +P+++  +LE     +FA++F G+     EVIW+  MR +L+  + AH+A+F   L  +  A Y Y  +P + +P ++ EL C  YY+R++
Sbjct: 1169 LGQLLPEAMVCFLENYSAEKFAEIFLGE-FDTPEVIWSSEMRRLLIEKIAAHIADFTPRLRGHTMARYPYLAIPVISYPQLENELFCHIYYLRHL 1262
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89316.20696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9SMN4_9CRUS2.000e-1636.84Hypothetical protein n=1 Tax=Argulus foliaceus Tax... [more]
E0VQI0_PEDHC1.880e-1335.16J domain-containing protein n=1 Tax=Pediculus huma... [more]
A0A1I8M3V4_MUSDO3.530e-1333.68J domain-containing protein n=9 Tax=Calyptratae Ta... [more]
A0A1B0G775_GLOMM3.530e-1333.68J domain-containing protein n=1 Tax=Glossina morsi... [more]
A0A1A9ZGA3_GLOPL3.530e-1333.68J domain-containing protein n=1 Tax=Glossina palli... [more]
B4HSP1_DROSE4.780e-1333.68GM20621 n=1 Tax=Drosophila sechellia TaxID=7238 Re... [more]
A1Z7S0_DROME4.820e-1333.68Receptor mediated endocytosis 8, isoform A n=72 Ta... [more]
B4J9A0_DROGR4.820e-1333.68GH19867 n=11 Tax=Drosophila TaxID=7215 RepID=B4J9A... [more]
A0A0Q9W0M5_DROVI4.820e-1333.68Uncharacterized protein, isoform B n=2 Tax=Drosoph... [more]
B4KQK7_DROMO4.820e-1333.68J domain-containing protein n=1 Tax=Drosophila moj... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89316contigM-pyrifera_M_contig89316:27..311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score84.3
Seed ortholog evalue3.3e-14
Seed eggNOG ortholog6669.EFX81421
Preferred nameRme-8
KEGG koko:K09533
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006810,GO:0006897,GO:0006898,GO:0006928,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0008150,GO:0009888,GO:0009987,GO:0010008,GO:0010631,GO:0012505,GO:0016020,GO:0016192,GO:0016477,GO:0016482,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030707,GO:0030855,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0040011,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045022,GO:0046907,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0060429,GO:0090130,GO:0090132,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:0098927
EggNOG free text desc.dnaJ homolog subfamily C member
EggNOG OGs38DQ3@33154,3BATN@33208,3CUGW@33213,41X59@6656,KOG1789@1,KOG1789@2759
COG Functional cat.O
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041,ko03110
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.964295-CDS-M-pyrifera_M_contig89316:26..3111622816802.964295-CDS-M-pyrifera_M_contig89316:26..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89316 27..311 -
1692278187.7471266-CDS-M-pyrifera_M_contig89316:26..3111692278187.7471266-CDS-M-pyrifera_M_contig89316:26..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89316 27..311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89316.20696.1prot_M-pyrifera_M_contig89316.20696.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89316 27..311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89316.20696.1

>prot_M-pyrifera_M_contig89316.20696.1 ID=prot_M-pyrifera_M_contig89316.20696.1|Name=mRNA_M-pyrifera_M_contig89316.20696.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
LRQYVPDSIATYLETADPTEFAQVFQGQSVSAAEVIWTPNMRNILLNAVG
AHLAEFKQTLEANPYAMYSYQEMPPVEFPGVDQELRCGGYYIRNV
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mRNA from alignment at M-pyrifera_M_contig89316:27..311-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89316.20696.1 ID=mRNA_M-pyrifera_M_contig89316.20696.1|Name=mRNA_M-pyrifera_M_contig89316.20696.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig89316:27..311- (Macrocystis pyrifera P11B4 male)
CTCCGCCAGTACGTGCCTGACTCCATCGCAACCTACTTGGAGACTGCCGA
TCCCACCGAGTTCGCTCAGGTTTTCCAGGGCCAGTCAGTCTCTGCAGCAG
AGGTCATCTGGACGCCCAACATGAGGAACATTCTGCTCAACGCCGTCGGT
GCCCATCTCGCTGAGTTCAAGCAGACCCTGGAGGCGAACCCCTATGCCAT
GTACTCCTACCAGGAGATGCCTCCGGTCGAGTTCCCTGGCGTTGACCAAG
AGCTGCGCTGTGGTGGCTACTACATCCGCAACGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89316:27..311-

>mRNA_M-pyrifera_M_contig89316.20696.1 ID=mRNA_M-pyrifera_M_contig89316.20696.1|Name=mRNA_M-pyrifera_M_contig89316.20696.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig89316:27..311- (Macrocystis pyrifera P11B4 male)
CTCCGCCAGTACGTGCCTGACTCCATCGCAACCTACTTGGAGACTGCCGA
TCCCACCGAGTTCGCTCAGGTTTTCCAGGGCCAGTCAGTCTCTGCAGCAG
AGGTCATCTGGACGCCCAACATGAGGAACATTCTGCTCAACGCCGTCGGT
GCCCATCTCGCTGAGTTCAAGCAGACCCTGGAGGCGAACCCCTATGCCAT
GTACTCCTACCAGGAGATGCCTCCGGTCGAGTTCCCTGGCGTTGACCAAG
AGCTGCGCTGTGGTGGCTACTACATCCGCAACGTGCTCCGCCAGTACGTG
CCTGACTCCATCGCAACCTACTTGGAGACTGCCGATCCCACCGAGTTCGC
TCAGGTTTTCCAGGGCCAGTCAGTCTCTGCAGCAGAGGTCATCTGGACGC
CCAACATGAGGAACATTCTGCTCAACGCCGTCGGTGCCCATCTCGCTGAG
TTCAAGCAGACCCTGGAGGCGAACCCCTATGCCATGTACTCCTACCAGGA
GATGCCTCCGGTCGAGTTCCCTGGCGTTGACCAAGAGCTGCGCTGTGGTG
GCTACTACATCCGCAACGTG
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