mRNA_M-pyrifera_M_contig89277.20694.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89277.20694.1
Unique NamemRNA_M-pyrifera_M_contig89277.20694.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89277.20694.1 vs. uniprot
Match: A0A2D9CI65_9BACT (Ribonuclease R n=4 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CI65_9BACT)

HSP 1 Score: 412 bits (1059), Expect = 6.560e-136
Identity = 203/269 (75.46%), Postives = 230/269 (85.50%), Query Frame = 1
Query:    1 VNLIFDDNGKVIDAEPEDDAYTHTLIEMFMVEANESLASLFEMLRVPVLRRIHPEPTPGDADVLRKTAMVAGFRIPKSPTREELQGLLDATAGTGASRAVHNAVLRTLTKASYSPQLIGHYALASKAYSHFTSPIRRYPDLTLHRAMFAYLKKTSNGENRPKSDEAWIKLGKELNEHPYCPHEQELFEIGTQCSNTEVNAAGAERSLRQFLILQLMAEHIGESFDGFITGVTPKGIYVQIAKYLADGMVKKHDLPGDVTRSKKQPKWRI 807
            V L+FD+NGKV+DA+ EDDA+THTLIEMFMVEANE+ ASLFE L VPVLRR HPEPTPGD D LRKTA VAGF+IP+SPTREELQ LLDATAGT ++RAVH AVLRT+TKA YSP LIGHYALAS AYSHFTSPIRRYPDLTLHRA++AYLK+T+NGENRP SDEAW +LG++L +  YCP +  L EIG  CS TE NA GAER LRQFL+LQLM +HIGE F+GFITGV+PKG+YVQI KYLADGMV K DL GD TRSK+ P WR+
Sbjct:  448 VELVFDENGKVVDAQKEDDAFTHTLIEMFMVEANEATASLFEKLEVPVLRRTHPEPTPGDVDDLRKTATVAGFKIPQSPTREELQTLLDATAGTTSARAVHMAVLRTMTKAVYSPALIGHYALASHAYSHFTSPIRRYPDLTLHRAIWAYLKRTNNGENRPSSDEAWKRLGRDLRDDDYCPDKSILAEIGAHCSGTEQNATGAERELRQFLVLQLMEQHIGEEFEGFITGVSPKGVYVQIEKYLADGMVAKKDLVGDTTRSKRPPTWRL 716          
BLAST of mRNA_M-pyrifera_M_contig89277.20694.1 vs. uniprot
Match: A0A3M2D2C3_9BACT (Ribonuclease R n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2D2C3_9BACT)

HSP 1 Score: 408 bits (1049), Expect = 1.590e-134
Identity = 199/269 (73.98%), Postives = 230/269 (85.50%), Query Frame = 1
Query:    1 VNLIFDDNGKVIDAEPEDDAYTHTLIEMFMVEANESLASLFEMLRVPVLRRIHPEPTPGDADVLRKTAMVAGFRIPKSPTREELQGLLDATAGTGASRAVHNAVLRTLTKASYSPQLIGHYALASKAYSHFTSPIRRYPDLTLHRAMFAYLKKTSNGENRPKSDEAWIKLGKELNEHPYCPHEQELFEIGTQCSNTEVNAAGAERSLRQFLILQLMAEHIGESFDGFITGVTPKGIYVQIAKYLADGMVKKHDLPGDVTRSKKQPKWRI 807
            V LIFD+NGKVIDAEPEDDA+THTLIEMFMVEANE++A+LFE L VPV+RRIHPEPTP D D LR+ A VAG++IPKSP R ELQ LLDATAGT A+RAVH AVLRTLTKA+YSP LIGHYALAS AYSHFTSPIRRYPDLT+HR++ AYL++T NG NRP+ D+A + LG+EL E   CPH+QEL EIG  CSNTEVNA  AER LRQFL+LQLMAEHIGE F+G +TGV+PKG+YVQ+ KYLADGM++K DLPGD TRS + P W+I
Sbjct:  447 VELIFDENGKVIDAEPEDDAFTHTLIEMFMVEANEAVATLFESLGVPVIRRIHPEPTPNDTDDLRRAATVAGYKIPKSPDRFELQALLDATAGTDAARAVHMAVLRTLTKATYSPALIGHYALASHAYSHFTSPIRRYPDLTVHRSLVAYLERTDNGRNRPRDDQARVALGRELKEDERCPHQQELVEIGNHCSNTEVNATEAERELRQFLVLQLMAEHIGEEFEGVVTGVSPKGVYVQLNKYLADGMIQKSDLPGDTTRSNRPPTWKI 715          
BLAST of mRNA_M-pyrifera_M_contig89277.20694.1 vs. uniprot
Match: A0A3M2B9V8_9BACT (Ribonuclease R n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2B9V8_9BACT)

HSP 1 Score: 368 bits (944), Expect = 8.440e-119
Identity = 188/269 (69.89%), Postives = 213/269 (79.18%), Query Frame = 1
Query:    1 VNLIFDDNGKVIDAEPEDDAYTHTLIEMFMVEANESLASLFEMLRVPVLRRIHPEPTPGDADVLRKTAMVAGFRIPKSPTREELQGLLDATAGTGASRAVHNAVLRTLTKASYSPQLIGHYALASKAYSHFTSPIRRYPDLTLHRAMFAYLKKTSNGENRPKSDEAWIKLGKELNEHPYCPHEQELFEIGTQCSNTEVNAAGAERSLRQFLILQLMAEHIGESFDGFITGVTPKGIYVQIAKYLADGMVKKHDLPGDVTRSKKQPKWRI 807
            V L+FD+NGKVIDAE EDDAYTHT+IEM MVEANE LA LFE LRVP+LRR+HPEP P D D L+K A VAGF IPKSPTREE+Q LLDAT GT A+RAVH AVLRTLTKA YSP  IGH+ALAS AYSHFTSPIRRYPDLT+HRA+  YL+ T NG+NRPK+D     LG  L +    P E  L EIG  CS TE NAA AER LRQFL+LQL+AE IGE F G +TGV P+G++VQI KYLADGM+K+ DLPGDVTRS K P+W+I
Sbjct:  457 VVLLFDENGKVIDAEKEDDAYTHTIIEMLMVEANEVLARLFEGLRVPLLRRVHPEPAPSDVDHLQKAARVAGFTIPKSPTREEIQALLDATRGTPAARAVHMAVLRTLTKAEYSPAAIGHFALASGAYSHFTSPIRRYPDLTVHRALAEYLRLTDNGQNRPKTDREKRALGARLRDR--LPDEATLVEIGRHCSQTEENAANAERELRQFLVLQLLAEKIGEEFTGVVTGVVPRGVFVQIDKYLADGMIKREDLPGDVTRSNKPPRWQI 723          
BLAST of mRNA_M-pyrifera_M_contig89277.20694.1 vs. uniprot
Match: A0A7C5WPY2_9BACT (Ribonuclease R n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C5WPY2_9BACT)

HSP 1 Score: 364 bits (934), Expect = 3.280e-117
Identity = 180/268 (67.16%), Postives = 219/268 (81.72%), Query Frame = 1
Query:    1 VNLIFDDNGKVIDAEPEDDAYTHTLIEMFMVEANESLASLFEMLRVPVLRRIHPEPTPGDADVLRKTAMVAGFRIPKSPTREELQGLLDATAGTGASRAVHNAVLRTLTKASYSPQLIGHYALASKAYSHFTSPIRRYPDLTLHRAMFAYLKKTSNGENRPKSDEAWIKLGKELNEHPYCPHEQELFEIGTQCSNTEVNAAGAERSLRQFLILQLMAE-HIGESFDGFITGVTPKGIYVQIAKYLADGMVKKHDLPGDVTRSKKQPKW 801
            V LIFD++G+VIDAE EDDAYTH LIEMFMVEANE++ASLFE L VP++RRIHP+P PGD + ++K A VAG+RIP+SPTREE+QGLLDAT G  A+RAVH AVLRTLTKA YSP LIGH+ALAS+AY+HFTSPIRRY DLT+HR++ AYL++T+NG NRP+ DE W  LGKEL     CP E  L +IG   + TE NA  AER LRQ+L+LQL++E HIG+   G +TGVTP+G++VQI KYLADGM+KK DLPGDVTR  K+P+W
Sbjct:  459 VELIFDEDGRVIDAEQEDDAYTHKLIEMFMVEANEAIASLFERLGVPLIRRIHPDPAPGDVEHIQKAATVAGYRIPQSPTREEIQGLLDATRGKPAARAVHMAVLRTLTKAEYSPALIGHFALASEAYAHFTSPIRRYADLTVHRSVEAYLRRTNNGTNRPRDDEEWKALGKELRGDHNCPPEPALVDIGRHITATEQNAEDAERELRQYLVLQLLSEKHIGDVMPGVVTGVTPRGVFVQIDKYLADGMIKKEDLPGDVTRDNKRPRW 726          
BLAST of mRNA_M-pyrifera_M_contig89277.20694.1 vs. uniprot
Match: A0A5M4D1D7_9CYAN (Ribonuclease R n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D1D7_9CYAN)

HSP 1 Score: 360 bits (923), Expect = 1.150e-115
Identity = 184/269 (68.40%), Postives = 211/269 (78.44%), Query Frame = 1
Query:    1 VNLIFDDNGKVIDAEPEDDAYTHTLIEMFMVEANESLASLFEMLRVPVLRRIHPEPTPGDADVLRKTAMVAGFRIPKSPTREELQGLLDATAGTGASRAVHNAVLRTLTKASYSPQLIGHYALASKAYSHFTSPIRRYPDLTLHRAMFAYLKKTSNGENRPKSDEAWIKLGKELNEHPYCPHEQELFEIGTQCSNTEVNAAGAERSLRQFLILQLMAEHIGESFDGFITGVTPKGIYVQIAKYLADGMVKKHDLPGDVTRSKKQPKWRI 807
            V L+FD+NGKVIDAE EDDAYTHT+IEM MVEANE LA LFE +RVP+LRR+HPEP P + D L+K A VAGF IPKSPTREE+QGLLDAT GT A+RAVH AVLRTLTKA YSP  IGH+ALAS AYSHFTSPIRRYPDLT+HRA+  YL++T+NG+NRP +D     LG  L      P E  L  +G  CS TE NA  AER LRQFL+LQL+AE IGE F G ITGV P+G++VQI KYLADGM+K+ DLPGDVTRS K P W+I
Sbjct:  457 VVLLFDENGKVIDAEKEDDAYTHTIIEMLMVEANEVLARLFEGMRVPLLRRVHPEPAPAEVDHLQKAARVAGFTIPKSPTREEIQGLLDATRGTPAARAVHMAVLRTLTKAEYSPAAIGHFALASGAYSHFTSPIRRYPDLTVHRALAEYLEETNNGQNRPTTDREKHALGGRLRGR--LPDEPTLVAVGKHCSQTEQNAEDAERELRQFLVLQLLAEKIGEEFSGVITGVVPRGVFVQIDKYLADGMIKREDLPGDVTRSNKPPNWQI 723          
BLAST of mRNA_M-pyrifera_M_contig89277.20694.1 vs. uniprot
Match: A0A2E2NAU7_9BACT (S1 motif domain-containing protein (Fragment) n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E2NAU7_9BACT)

HSP 1 Score: 351 bits (900), Expect = 1.670e-115
Identity = 175/268 (65.30%), Postives = 211/268 (78.73%), Query Frame = 1
Query:    1 VNLIFDDNGKVIDAEPEDDAYTHTLIEMFMVEANESLASLFEMLRVPVLRRIHPEPTPGDADVLRKTAMVAGFRIPKSPTREELQGLLDATAGTGASRAVHNAVLRTLTKASYSPQLIGHYALASKAYSHFTSPIRRYPDLTLHRAMFAYLKKTSNGENRPKSDEAWIKLGKELNEHPYCPHEQELFEIGTQCSNTEVNAAGAERSLRQFLILQLMAE-HIGESFDGFITGVTPKGIYVQIAKYLADGMVKKHDLPGDVTRSKKQPKW 801
            V LIFD++GKV+D +PEDDAYTH LIEMFMVEANE +A LFE L VP++RRIHPEP P D D L+K A VAGF+IPKSP+REE+QGLL+AT G+ ASR+V  AVLRTL  A YSP LIGH+ALAS AY+HFTSPIRRYPDLT+HR++  YL+ T NG   PK DEA   LGK+L E   CP E+ L E G  C+ TE NA  AER LRQFL+LQL++E HIG+ F G +TGVTP+G++VQI ++LADGM+KK DLPGDV+R  K P+W
Sbjct:  164 VELIFDEDGKVVDGQPEDDAYTHKLIEMFMVEANEVVARLFEDLGVPLIRRIHPEPMPNDVDHLQKAANVAGFKIPKSPSREEMQGLLEATKGSPASRSVSLAVLRTLAMAEYSPALIGHFALASSAYAHFTSPIRRYPDLTVHRSIAEYLRATKNGTQAPKGDEAKANLGKQLLERKDCPAEETLVEFGRHCTATEQNAESAERELRQFLVLQLLSEKHIGDEFGGVVTGVTPRGVFVQIDRFLADGMIKKEDLPGDVSRDAKPPRW 431          
BLAST of mRNA_M-pyrifera_M_contig89277.20694.1 vs. uniprot
Match: A0A7Y5SAJ0_9BACT (Ribonuclease R n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y5SAJ0_9BACT)

HSP 1 Score: 358 bits (920), Expect = 2.210e-115
Identity = 180/269 (66.91%), Postives = 215/269 (79.93%), Query Frame = 1
Query:    1 VNLIFDDNGKVIDAEPEDDAYTHTLIEMFMVEANESLASLFEMLRVPVLRRIHPEPTPGDADVLRKTAMVAGFRIPKSPTREELQGLLDATAGTGASRAVHNAVLRTLTKASYSPQLIGHYALASKAYSHFTSPIRRYPDLTLHRAMFAYLKKTSNGENRPKSDEAWIKLGKELNEHPYCPHEQELFEIGTQCSNTEVNAAGAERSLRQFLILQLMAEHIGESFDGFITGVTPKGIYVQIAKYLADGMVKKHDLPGDVTRSKKQPKWRI 807
            V LIFD++G V+DAE EDDA+THTLIEMFMVEANE LA LFE L VP+LRR+HPEPTPGD D LR++AMVAGF+IPK+PTREELQGL++AT GT A+RAVH AVLRTLTKA YSP L+GH+ALAS+AY+HFTSPIRRY DLT+HRA+ AYLK+T NG  RP +DE    LG+ L +   CP E +L EIG   +  E NA  AE SLR+FL+LQL+ +HIGESF G +TGV  +G++VQ+ KYLADG VK  DLPGDVTRS   P W+I
Sbjct:  444 VVLIFDEHGHVVDAEREDDAFTHTLIEMFMVEANEVLARLFERLNVPLLRRVHPEPTPGDTDDLRRSAMVAGFKIPKNPTREELQGLVNATRGTPAARAVHMAVLRTLTKAEYSPALVGHFALASEAYAHFTSPIRRYADLTVHRALAAYLKETENGRLRPATDEEGAALGRRLRDSNLCPPEVDLIEIGRHATMRETNAEDAEHSLRKFLVLQLLEKHIGESFRGVVTGVNNRGVFVQLDKYLADGFVKSSDLPGDVTRSNLPPIWKI 712          
BLAST of mRNA_M-pyrifera_M_contig89277.20694.1 vs. uniprot
Match: A0A7D8YFS4_9BACT (Ribonuclease R n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7D8YFS4_9BACT)

HSP 1 Score: 357 bits (916), Expect = 1.230e-114
Identity = 180/271 (66.42%), Postives = 216/271 (79.70%), Query Frame = 1
Query:    1 VNLIFDDNGKVIDAEPEDDAYTHTLIEMFMVEANESLASLFEMLRVPVLRRIHPEPTPGDADVLRKTAMVAGFRIPKSPTREELQGLLDATAGTGASRAVHNAVLRTLTKASYSPQLIGHYALASKAYSHFTSPIRRYPDLTLHRAMFAYLKKTSNGENRPKSDE--AWIKLGKELNEHPYCPHEQELFEIGTQCSNTEVNAAGAERSLRQFLILQLMAEHIGESFDGFITGVTPKGIYVQIAKYLADGMVKKHDLPGDVTRSKKQPKWRI 807
            V LIFD++GKV+DAE EDDAYTH +IEMFMVEANE LA LFE + VP+LRR H +PTPGD D LR+ AMVAGFRIP SP+REE+Q LLDATAGT A+RAVH AVLRTL+KASYSP LIGH+ALAS+AY+HFTSPIRRYPDLT+HRA+ AYL++T NG+ RP+ D+  A   LG +L E   CP ++EL EIG  CS TE  A  AER LRQFL+LQL+   IGESF   +TGVTP+G++VQI KYLADG++ K DLPGD +R  + PKW +
Sbjct:  456 VELIFDEDGKVVDAEREDDAYTHKIIEMFMVEANEVLARLFENMDVPLLRRTHADPTPGDQDNLRRAAMVAGFRIPASPSREEMQSLLDATAGTPAARAVHMAVLRTLSKASYSPALIGHFALASEAYAHFTSPIRRYPDLTVHRALGAYLRETDNGKKRPRPDDEKALRNLGIKLLESGACPSQEELVEIGRHCSKTEERATAAERELRQFLVLQLLETKIGESFSAVVTGVTPRGVFVQIDKYLADGLILKEDLPGDTSRGNQTPKWSV 726          
BLAST of mRNA_M-pyrifera_M_contig89277.20694.1 vs. uniprot
Match: A0A7L9BMA2_9BACT (Ribonuclease R n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A7L9BMA2_9BACT)

HSP 1 Score: 352 bits (903), Expect = 8.550e-113
Identity = 179/269 (66.54%), Postives = 211/269 (78.44%), Query Frame = 1
Query:    1 VNLIFDDNGKVIDAEPEDDAYTHTLIEMFMVEANESLASLFEMLRVPVLRRIHPEPTPGDADVLRKTAMVAGFRIPKSPTREELQGLLDATAGTGASRAVHNAVLRTLTKASYSPQLIGHYALASKAYSHFTSPIRRYPDLTLHRAMFAYLKKTSNGENRPKSDEAWIKLGKELNEHPYCPHEQELFEIGTQCSNTEVNAAGAERSLRQFLILQLMAEHIGESFDGFITGVTPKGIYVQIAKYLADGMVKKHDLPGDVTRSKKQPKWRI 807
            V L FD+ G+VIDAE EDDAYTHTLIEMFMVEANE +A L E L VP+LRR+HP+PTPGD D LRKTA VAGF+IP+ PTREELQGLLDAT GT ASRAVH AVLRTLTKA YSP  IGH+ALAS+AY+HFTSPIRRY DLT+HR +  YL+ TSNG  RP+SDE   +LG++L +   CP E EL EIG   S  E NA  AE+SL++FL+LQL+  H+GE++ G +TGV PKG++VQI KYL DG VK+ DLPGDVTR    P W+I
Sbjct:  450 VVLKFDEQGRVIDAEKEDDAYTHTLIEMFMVEANEVVARLAERLGVPMLRRVHPDPTPGDVDELRKTANVAGFKIPQKPTREELQGLLDATRGTPASRAVHMAVLRTLTKAEYSPLTIGHFALASEAYAHFTSPIRRYADLTVHRVIGEYLRMTSNGAARPRSDEDRKRLGRDLRDSDLCPDEGELTEIGRHASMREKNAEDAEQSLKKFLVLQLLEGHVGETYAGVVTGVNPKGVFVQIDKYLIDGFVKREDLPGDVTRDNISPVWKI 718          
BLAST of mRNA_M-pyrifera_M_contig89277.20694.1 vs. uniprot
Match: A0A651I5S5_9BACT (Exoribonuclease II (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A651I5S5_9BACT)

HSP 1 Score: 350 bits (899), Expect = 1.970e-112
Identity = 169/269 (62.83%), Postives = 215/269 (79.93%), Query Frame = 1
Query:    1 VNLIFDDNGKVIDAEPEDDAYTHTLIEMFMVEANESLASLFEMLRVPVLRRIHPEPTPGDADVLRKTAMVAGFRIPKSPTREELQGLLDATAGTGASRAVHNAVLRTLTKASYSPQLIGHYALASKAYSHFTSPIRRYPDLTLHRAMFAYLKKTSNGENRPKSDEAWIKLGKELNEHPYCPHEQELFEIGTQCSNTEVNAAGAERSLRQFLILQLMAEHIGESFDGFITGVTPKGIYVQIAKYLADGMVKKHDLPGDVTRSKKQPKWRI 807
            V LIFD+NG+VIDAEPEDDA+THT+IEMFMVEANE +A LFE + VP+LRR+HPEPTPGD + LRK A VAG++IPK+PTR+ELQ LL+AT GT ASRAVH AVLRTLTKA YSP LIGH+ALAS+AY+HFTSPIRRYPDLT+H A+  YL++T NG  RP+  +    LG+EL +   C   ++L  +G  CS TE  A  AER LRQFL+LQL+A+ IGE +D  +TGV+P+G+++Q+ K+L+DG++K  DLPGDVTR  ++P W+I
Sbjct:  446 VELIFDENGRVIDAEPEDDAFTHTIIEMFMVEANEIVARLFESMSVPLLRRVHPEPTPGDTEDLRKAATVAGYKIPKNPTRDELQSLLNATRGTPASRAVHMAVLRTLTKAEYSPALIGHFALASEAYAHFTSPIRRYPDLTVHWALSEYLERTKNGSKRPRDSKERKNLGRELRDSERCLDLEDLVTLGKHCSGTEERATEAERELRQFLVLQLLADKIGEVYDAVVTGVSPRGVFIQLNKFLSDGLIKTSDLPGDVTRGGQRPNWKI 714          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89277.20694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9CI65_9BACT6.560e-13675.46Ribonuclease R n=4 Tax=Phycisphaerae TaxID=666505 ... [more]
A0A3M2D2C3_9BACT1.590e-13473.98Ribonuclease R n=1 Tax=Planctomycetes bacterium Ta... [more]
A0A3M2B9V8_9BACT8.440e-11969.89Ribonuclease R n=1 Tax=Planctomycetes bacterium Ta... [more]
A0A7C5WPY2_9BACT3.280e-11767.16Ribonuclease R n=1 Tax=Phycisphaerales bacterium T... [more]
A0A5M4D1D7_9CYAN1.150e-11568.40Ribonuclease R n=1 Tax=Cyanobacteria bacterium CYA... [more]
A0A2E2NAU7_9BACT1.670e-11565.30S1 motif domain-containing protein (Fragment) n=1 ... [more]
A0A7Y5SAJ0_9BACT2.210e-11566.91Ribonuclease R n=1 Tax=Phycisphaerales bacterium T... [more]
A0A7D8YFS4_9BACT1.230e-11466.42Ribonuclease R n=1 Tax=Phycisphaerales bacterium T... [more]
A0A7L9BMA2_9BACT8.550e-11366.54Ribonuclease R n=1 Tax=Phycisphaeraceae bacterium ... [more]
A0A651I5S5_9BACT1.970e-11262.83Exoribonuclease II (Fragment) n=1 Tax=Phycisphaera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89277contigM-pyrifera_M_contig89277:1..807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score260.8
Seed ortholog evalue7.2e-67
Seed eggNOG ortholog1142394.PSMK_14250
Preferred namernr
KEGG koko:K12573,ko:K12585
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
EggNOG OGs2IX1J@203682,COG0557@1,COG0557@2
COG Functional cat.J
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Exons1
Model size807
Cds size807
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.8833349-CDS-M-pyrifera_M_contig89277:0..8071622816802.8833349-CDS-M-pyrifera_M_contig89277:0..807Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89277 1..807 -
1692278187.6963477-CDS-M-pyrifera_M_contig89277:0..8071692278187.6963477-CDS-M-pyrifera_M_contig89277:0..807Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89277 1..807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89277.20694.1prot_M-pyrifera_M_contig89277.20694.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89277 1..807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89277.20694.1

>prot_M-pyrifera_M_contig89277.20694.1 ID=prot_M-pyrifera_M_contig89277.20694.1|Name=mRNA_M-pyrifera_M_contig89277.20694.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=269bp
VNLIFDDNGKVIDAEPEDDAYTHTLIEMFMVEANESLASLFEMLRVPVLR
RIHPEPTPGDADVLRKTAMVAGFRIPKSPTREELQGLLDATAGTGASRAV
HNAVLRTLTKASYSPQLIGHYALASKAYSHFTSPIRRYPDLTLHRAMFAY
LKKTSNGENRPKSDEAWIKLGKELNEHPYCPHEQELFEIGTQCSNTEVNA
AGAERSLRQFLILQLMAEHIGESFDGFITGVTPKGIYVQIAKYLADGMVK
KHDLPGDVTRSKKQPKWRI
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mRNA from alignment at M-pyrifera_M_contig89277:1..807-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89277.20694.1 ID=mRNA_M-pyrifera_M_contig89277.20694.1|Name=mRNA_M-pyrifera_M_contig89277.20694.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=807bp|location=Sequence derived from alignment at M-pyrifera_M_contig89277:1..807- (Macrocystis pyrifera P11B4 male)
GTAAATCTGATCTTTGACGACAACGGGAAAGTGATCGATGCTGAACCCGA AGACGACGCGTACACGCACACGCTGATTGAAATGTTCATGGTCGAAGCGA ACGAGTCGCTCGCGAGCTTGTTCGAGATGCTGCGTGTCCCTGTGCTGCGG CGCATCCACCCTGAGCCGACTCCCGGCGACGCGGATGTGCTGCGAAAAAC AGCGATGGTCGCAGGCTTCCGCATCCCCAAATCCCCCACACGCGAAGAAC TCCAGGGATTGCTCGACGCGACAGCAGGGACAGGCGCATCAAGAGCAGTG CACAACGCAGTACTGCGAACGCTTACGAAAGCGTCGTACTCGCCGCAGCT GATCGGACACTACGCGCTCGCGTCCAAAGCGTACTCGCACTTCACTTCCC CGATTCGGCGCTATCCCGATCTCACGCTGCATCGCGCGATGTTCGCGTAT CTCAAAAAGACAAGCAACGGCGAGAATCGTCCAAAGTCTGACGAAGCATG GATCAAGCTTGGGAAAGAGCTCAACGAGCATCCCTACTGTCCCCATGAGC AGGAGCTCTTCGAGATCGGGACGCAGTGCTCGAACACAGAAGTCAATGCC GCCGGCGCCGAGCGTTCGCTGCGTCAGTTCCTGATTCTCCAACTGATGGC AGAGCACATCGGAGAGTCATTCGACGGCTTCATTACAGGAGTCACTCCCA AGGGGATTTATGTCCAGATCGCGAAGTATCTCGCAGACGGCATGGTCAAA AAGCACGATCTCCCGGGAGATGTCACGCGATCCAAGAAGCAACCCAAGTG GCGCATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89277:1..807-

>mRNA_M-pyrifera_M_contig89277.20694.1 ID=mRNA_M-pyrifera_M_contig89277.20694.1|Name=mRNA_M-pyrifera_M_contig89277.20694.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1614bp|location=Sequence derived from alignment at M-pyrifera_M_contig89277:1..807- (Macrocystis pyrifera P11B4 male)
GTAAATCTGATCTTTGACGACAACGGGAAAGTGATCGATGCTGAACCCGA
AGACGACGCGTACACGCACACGCTGATTGAAATGTTCATGGTCGAAGCGA
ACGAGTCGCTCGCGAGCTTGTTCGAGATGCTGCGTGTCCCTGTGCTGCGG
CGCATCCACCCTGAGCCGACTCCCGGCGACGCGGATGTGCTGCGAAAAAC
AGCGATGGTCGCAGGCTTCCGCATCCCCAAATCCCCCACACGCGAAGAAC
TCCAGGGATTGCTCGACGCGACAGCAGGGACAGGCGCATCAAGAGCAGTG
CACAACGCAGTACTGCGAACGCTTACGAAAGCGTCGTACTCGCCGCAGCT
GATCGGACACTACGCGCTCGCGTCCAAAGCGTACTCGCACTTCACTTCCC
CGATTCGGCGCTATCCCGATCTCACGCTGCATCGCGCGATGTTCGCGTAT
CTCAAAAAGACAAGCAACGGCGAGAATCGTCCAAAGTCTGACGAAGCATG
GATCAAGCTTGGGAAAGAGCTCAACGAGCATCCCTACTGTCCCCATGAGC
AGGAGCTCTTCGAGATCGGGACGCAGTGCTCGAACACAGAAGTCAATGCC
GCCGGCGCCGAGCGTTCGCTGCGTCAGTTCCTGATTCTCCAACTGATGGC
AGAGCACATCGGAGAGTCATTCGACGGCTTCATTACAGGAGTCACTCCCA
AGGGGATTTATGTCCAGATCGCGAAGTATCTCGCAGACGGCATGGTCAAA
AAGCACGATCTCCCGGGAGATGTCACGCGATCCAAGAAGCAACCCAAGTG
GCGCATTGTAAATCTGATCTTTGACGACAACGGGAAAGTGATCGATGCTG
AACCCGAAGACGACGCGTACACGCACACGCTGATTGAAATGTTCATGGTC
GAAGCGAACGAGTCGCTCGCGAGCTTGTTCGAGATGCTGCGTGTCCCTGT
GCTGCGGCGCATCCACCCTGAGCCGACTCCCGGCGACGCGGATGTGCTGC
GAAAAACAGCGATGGTCGCAGGCTTCCGCATCCCCAAATCCCCCACACGC
GAAGAACTCCAGGGATTGCTCGACGCGACAGCAGGGACAGGCGCATCAAG
AGCAGTGCACAACGCAGTACTGCGAACGCTTACGAAAGCGTCGTACTCGC
CGCAGCTGATCGGACACTACGCGCTCGCGTCCAAAGCGTACTCGCACTTC
ACTTCCCCGATTCGGCGCTATCCCGATCTCACGCTGCATCGCGCGATGTT
CGCGTATCTCAAAAAGACAAGCAACGGCGAGAATCGTCCAAAGTCTGACG
AAGCATGGATCAAGCTTGGGAAAGAGCTCAACGAGCATCCCTACTGTCCC
CATGAGCAGGAGCTCTTCGAGATCGGGACGCAGTGCTCGAACACAGAAGT
CAATGCCGCCGGCGCCGAGCGTTCGCTGCGTCAGTTCCTGATTCTCCAAC
TGATGGCAGAGCACATCGGAGAGTCATTCGACGGCTTCATTACAGGAGTC
ACTCCCAAGGGGATTTATGTCCAGATCGCGAAGTATCTCGCAGACGGCAT
GGTCAAAAAGCACGATCTCCCGGGAGATGTCACGCGATCCAAGAAGCAAC
CCAAGTGGCGCATT
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